Cla014691 (gene) Watermelon (97103) v1

Overview
NameCla014691
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGlutaredoxin (AHRD V1 ***- B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II
LocationChr9 : 4950020 .. 4950334 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATGAATGCAGTGAAAGGGTTGGTAGCTGAGAAGCCAGTTGTGATCTTCAGCAGGAGCCAATGCTCAATGAGCTATACAGTAAAGACACTTATATCAAGCTTTGGGGCTAATCCTACTGTGTATGAGCTTGATGAGATACCCAATGGGCATCATATTGAGACACTGCTGCTTCAACTAGGATGCCAGCCATGTGTGCCTGCTATTTTCATTGGGCAGAAGTTAATTGGTGGTGCCAGAGAGCTCATGAGCCTGCAAGTCAGGAATGAGCTTATGCCATTGCTCATGAGTGCCAGAGCTATATGGGTTTGA

mRNA sequence

ATGGATATGAATGCAGTGAAAGGGTTGGTAGCTGAGAAGCCAGTTGTGATCTTCAGCAGGAGCCAATGCTCAATGAGCTATACAGTAAAGACACTTATATCAAGCTTTGGGGCTAATCCTACTGTGTATGAGCTTGATGAGATACCCAATGGGCATCATATTGAGACACTGCTGCTTCAACTAGGATGCCAGCCATGTGTGCCTGCTATTTTCATTGGGCAGAAGTTAATTGGTGGTGCCAGAGAGCTCATGAGCCTGCAAGTCAGGAATGAGCTTATGCCATTGCTCATGAGTGCCAGAGCTATATGGGTTTGA

Coding sequence (CDS)

ATGGATATGAATGCAGTGAAAGGGTTGGTAGCTGAGAAGCCAGTTGTGATCTTCAGCAGGAGCCAATGCTCAATGAGCTATACAGTAAAGACACTTATATCAAGCTTTGGGGCTAATCCTACTGTGTATGAGCTTGATGAGATACCCAATGGGCATCATATTGAGACACTGCTGCTTCAACTAGGATGCCAGCCATGTGTGCCTGCTATTTTCATTGGGCAGAAGTTAATTGGTGGTGCCAGAGAGCTCATGAGCCTGCAAGTCAGGAATGAGCTTATGCCATTGCTCATGAGTGCCAGAGCTATATGGGTTTGA

Protein sequence

MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV
Homology
[Close]
BLAST of Cla014691 vs. Swiss-Prot
Match: GRXS1_ARATH (Monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-30
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLG 62
           M  +  L+ +KPVVIFS++ C MS+++K+LIS +GAN TVYELDE+ NG  IE  L++LG
Sbjct: 1   MEKISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELG 60

Query: 63  CQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C+P VPA+FIGQ+L+GGA +LMSLQVRN+L  LL  A AIW+
Sbjct: 61  CKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102

[Close]
BLAST of Cla014691 vs. Swiss-Prot
Match: GRXS6_ARATH (Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-29
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLG 62
           M +V+ LV +KPVVIFS+S C MS++++TLIS FGA  TVYELD+  NG  IE  L+Q+G
Sbjct: 1   MESVRSLVEDKPVVIFSKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMG 60

Query: 63  CQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C+P VPA+FIGQ+ IGGA ++M+LQV+N+L  +L  A AIWV
Sbjct: 61  CKPSVPAVFIGQQFIGGANQVMTLQVKNQLAAMLRRAGAIWV 102

[Close]
BLAST of Cla014691 vs. Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.3e-28
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLG 62
           M+ +  +V E+PVVI+S+S C MS+T+KTL+  FGANP VYELDEI  G  IE  LL+LG
Sbjct: 1   MDMITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLG 60

Query: 63  CQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C P VP +FIG +L+GGA E+MSL +   L+P+L  A A+WV
Sbjct: 61  CSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102

[Close]
BLAST of Cla014691 vs. Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-25
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLG 62
           M  ++ +++EK VVIFS++ C MS+T+KTL   FG NPT+YELDEI  G  IE  L QLG
Sbjct: 1   MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLG 60

Query: 63  CQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C P VP +FIG +L+GGA ++MSL +   L+P+L  A A+W+
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

[Close]
BLAST of Cla014691 vs. Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-25
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLG 62
           M+ ++ +++EK VVIFS++ C MS+T+KTL   FG NPT+YELDEI  G  IE  L QLG
Sbjct: 1   MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLG 60

Query: 63  CQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           C P VP +FIG +L+GGA ++MSL +   L+P+L    A+W+
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102

[Close]
BLAST of Cla014691 vs. TrEMBL
Match: U3RJA5_CUCSA (Glutaredoxin OS=Cucumis sativus GN=GRX8 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-50
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1 

Query: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQ 60
           MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGH IETLLLQ
Sbjct: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHQIETLLLQ 60

Query: 61  LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV
Sbjct: 61  LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 104

[Close]
BLAST of Cla014691 vs. TrEMBL
Match: A0A067H8Q0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039608mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-32
Identity = 70/100 (70.00%), Postives = 84/100 (84.00%), Query Frame = 1 

Query: 5   AVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLGCQ 64
           AV  +VAE+PVVIFSRS CSMS+ +K LI SFGANPTVYELDEIPNG  IE  L+QLGCQ
Sbjct: 4   AVTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQ 63

Query: 65  PCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           P VPA+FIGQ+L+GGA+++MSLQV N+L  LL+ A AIW+
Sbjct: 64  PIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 103

[Close]
BLAST of Cla014691 vs. TrEMBL
Match: B9I9V9_POPTR (Glutaredoxin family protein OS=Populus trichocarpa GN=POPTR_0014s12850g PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.8e-32
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIE-TLLLQL 62
           M+ V  LVA++PVV+FSRS C MS+++KTLISSFGANPTVYELD+IPNG  IE  L+ QL
Sbjct: 1   MDMVNRLVADRPVVVFSRSTCCMSHSIKTLISSFGANPTVYELDQIPNGKQIEKALVQQL 60

Query: 63  GCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           GCQP VPA+FIGQ+ +GG +++MSLQVRNEL PLL  A AIW+
Sbjct: 61  GCQPSVPAVFIGQEFVGGDKQVMSLQVRNELAPLLRKAGAIWI 103

[Close]
BLAST of Cla014691 vs. TrEMBL
Match: B9S3V2_RICCO (Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_0555440 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.8e-32
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLG 62
           M  V  LV EKPVVIFS+S C MS+T+K+LI  FGANPTVYELD IPNG  IE  L+QLG
Sbjct: 1   MEMVNRLVKEKPVVIFSKSSCCMSHTIKSLICGFGANPTVYELDRIPNGQQIERTLMQLG 60

Query: 63  CQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           CQP VP++FIGQKL+GG +++MSL V+N+L+PLL+ A AIW+
Sbjct: 61  CQPSVPSVFIGQKLVGGEKQVMSLHVQNQLIPLLIDAGAIWI 102

[Close]
BLAST of Cla014691 vs. TrEMBL
Match: V4VVY6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023013mg PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.6e-32
Identity = 70/100 (70.00%), Postives = 84/100 (84.00%), Query Frame = 1 

Query: 5   AVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLGCQ 64
           AV  +VAE+PVVIFSRS CSMS+ +K LI SFGANPTVYELDEIPNG  IE  L+QLGCQ
Sbjct: 4   AVTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGLQIERELVQLGCQ 63

Query: 65  PCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           P VPA+FIGQ+L+GGA+++MSLQV N+L  LL+ A AIW+
Sbjct: 64  PIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 103

[Close]
BLAST of Cla014691 vs. NCBI nr
Match: gi|821595228|ref|NP_001295830.1| (monothiol glutaredoxin-S1-like [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-50
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1 

Query: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQ 60
           MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGH IETLLLQ
Sbjct: 1   MDMNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHQIETLLLQ 60

Query: 61  LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV
Sbjct: 61  LGCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 104

[Close]
BLAST of Cla014691 vs. NCBI nr
Match: gi|743870506|ref|XP_011033597.1| (PREDICTED: monothiol glutaredoxin-S6-like [Populus euphratica])

HSP 1 Score: 145.6 bits (366), Expect = 4.9e-32
Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIE-TLLLQL 62
           M+ VK LVA++PVV+FSRS C MS+ +KTLISSFGANPTVYELD+IPNG  IE  L+ QL
Sbjct: 1   MDMVKRLVADRPVVVFSRSTCCMSHAIKTLISSFGANPTVYELDQIPNGKQIEKALVQQL 60

Query: 63  GCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           GCQP VPA+FIGQ  +GG +++MSLQVRNEL PLL  A AIW+
Sbjct: 61  GCQPSVPAVFIGQDFVGGDKQVMSLQVRNELAPLLRKAGAIWI 103

[Close]
BLAST of Cla014691 vs. NCBI nr
Match: gi|568852444|ref|XP_006479886.1| (PREDICTED: monothiol glutaredoxin-S1 [Citrus sinensis])

HSP 1 Score: 145.6 bits (366), Expect = 4.9e-32
Identity = 70/100 (70.00%), Postives = 84/100 (84.00%), Query Frame = 1 

Query: 5   AVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLGCQ 64
           AV  +VAE+PVVIFSRS CSMS+ +K LI SFGANPTVYELDEIPNG  IE  L+QLGCQ
Sbjct: 4   AVTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQ 63

Query: 65  PCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           P VPA+FIGQ+L+GGA+++MSLQV N+L  LL+ A AIW+
Sbjct: 64  PIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 103

[Close]
BLAST of Cla014691 vs. NCBI nr
Match: gi|255559302|ref|XP_002520671.1| (PREDICTED: monothiol glutaredoxin-S1 [Ricinus communis])

HSP 1 Score: 144.8 bits (364), Expect = 8.3e-32
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIETLLLQLG 62
           M  V  LV EKPVVIFS+S C MS+T+K+LI  FGANPTVYELD IPNG  IE  L+QLG
Sbjct: 1   MEMVNRLVKEKPVVIFSKSSCCMSHTIKSLICGFGANPTVYELDRIPNGQQIERTLMQLG 60

Query: 63  CQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           CQP VP++FIGQKL+GG +++MSL V+N+L+PLL+ A AIW+
Sbjct: 61  CQPSVPSVFIGQKLVGGEKQVMSLHVQNQLIPLLIDAGAIWI 102

[Close]
BLAST of Cla014691 vs. NCBI nr
Match: gi|224131232|ref|XP_002321033.1| (glutaredoxin family protein [Populus trichocarpa])

HSP 1 Score: 144.8 bits (364), Expect = 8.3e-32
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 

Query: 3   MNAVKGLVAEKPVVIFSRSQCSMSYTVKTLISSFGANPTVYELDEIPNGHHIE-TLLLQL 62
           M+ V  LVA++PVV+FSRS C MS+++KTLISSFGANPTVYELD+IPNG  IE  L+ QL
Sbjct: 1   MDMVNRLVADRPVVVFSRSTCCMSHSIKTLISSFGANPTVYELDQIPNGKQIEKALVQQL 60

Query: 63  GCQPCVPAIFIGQKLIGGARELMSLQVRNELMPLLMSARAIWV 105
           GCQP VPA+FIGQ+ +GG +++MSLQVRNEL PLL  A AIW+
Sbjct: 61  GCQPSVPAVFIGQEFVGGDKQVMSLQVRNELAPLLRKAGAIWI 103

The following BLAST results are available for this feature:
BLAST of Cla014691 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GRXS1_ARATH3.5e-3059.80Monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1[more]
GRXS6_ARATH2.3e-2958.82Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1[more]
GRXS2_ARATH4.3e-2855.88Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=3 SV=1[more]
GRXS5_ARATH1.2e-2551.96Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1[more]
GRXS4_ARATH1.2e-2550.98Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1[more]
BLAST of Cla014691 vs. TrEMBL
Match NameE-valueIdentityDescription
U3RJA5_CUCSA2.1e-5099.04Glutaredoxin OS=Cucumis sativus GN=GRX8 PE=2 SV=1[more]
A0A067H8Q0_CITSI3.4e-3270.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039608mg PE=4 SV=1[more]
B9I9V9_POPTR5.8e-3267.96Glutaredoxin family protein OS=Populus trichocarpa GN=POPTR_0014s12850g PE=4 SV=... [more]
B9S3V2_RICCO5.8e-3265.69Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_0555440 PE=4 SV=1[more]
V4VVY6_9ROSI7.6e-3270.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023013mg PE=4 SV=1[more]
BLAST of Cla014691 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|821595228|ref|NP_001295830.1|3.0e-5099.04monothiol glutaredoxin-S1-like [Cucumis sativus][more]
gi|743870506|ref|XP_011033597.1|4.9e-3268.93PREDICTED: monothiol glutaredoxin-S6-like [Populus euphratica][more]
gi|568852444|ref|XP_006479886.1|4.9e-3270.00PREDICTED: monothiol glutaredoxin-S1 [Citrus sinensis][more]
gi|255559302|ref|XP_002520671.1|8.3e-3265.69PREDICTED: monothiol glutaredoxin-S1 [Ricinus communis][more]
gi|224131232|ref|XP_002321033.1|8.3e-3267.96glutaredoxin family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002109Glutaredoxin
IPR011905GlrX-like_pln_2
IPR012336Thioredoxin-like_fold
IPR014025Glutaredoxin_subgr
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0022900 electron transport chain
biological_process GO:0000122 negative regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005623 cell
cellular_component GO:0005575 cellular_component
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0008794 arsenate reductase (glutaredoxin) activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU11355watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU37671watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU79365watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla014691Cla014691.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU37671WMU37671transcribed_cluster
WMU11355WMU11355transcribed_cluster
WMU79365WMU79365transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002109GlutaredoxinPFAMPF00462Glutaredoxincoord: 15..77
score: 1.
IPR002109GlutaredoxinPROFILEPS51354GLUTAREDOXIN_2coord: 3..103
score: 19
IPR011905Glutaredoxin-like, plant IITIGRFAMsTIGR02189TIGR02189coord: 7..104
score: 3.1
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 4..103
score: 1.1
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 4..103
score: 4.48
IPR014025Glutaredoxin subgroupPRINTSPR00160GLUTAREDOXINcoord: 15..33
score: 1.4E-5coord: 74..87
score: 1.4E-5coord: 60..73
score: 1.
NoneNo IPR availablePANTHERPTHR10168GLUTAREDOXINcoord: 3..104
score: 1.0
NoneNo IPR availablePANTHERPTHR10168:SF81MONOTHIOL GLUTAREDOXIN-S1-RELATEDcoord: 3..104
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla014691Cla97C06G114820Watermelon (97103) v2wmwmbB030
Cla014691Cla97C05G087360Watermelon (97103) v2wmwmbB027
Cla014691Cla97C09G168850Watermelon (97103) v2wmwmbB041
Cla014691Csa7G394610Cucumber (Chinese Long) v2cuwmB568
Cla014691MELO3C021350Melon (DHL92) v3.5.1mewmB088
Cla014691MELO3C016053Melon (DHL92) v3.5.1mewmB184
Cla014691ClCG09G006310Watermelon (Charleston Gray)wcgwmB007
Cla014691ClCG06G005320Watermelon (Charleston Gray)wcgwmB319
Cla014691CmaCh08G012090Cucurbita maxima (Rimu)cmawmB861
Cla014691CmaCh17G011200Cucurbita maxima (Rimu)cmawmB328
Cla014691CmaCh06G014770Cucurbita maxima (Rimu)cmawmB780
Cla014691CmoCh17G010950Cucurbita moschata (Rifu)cmowmB322
Cla014691CmoCh08G011830Cucurbita moschata (Rifu)cmowmB848
Cla014691CmoCh08G003920Cucurbita moschata (Rifu)cmowmB843
Cla014691Lsi02G023630Bottle gourd (USVL1VR-Ls)lsiwmB175
Cla014691Cp4.1LG12g05310Cucurbita pepo (Zucchini)cpewmB131
Cla014691Cp4.1LG17g06820Cucurbita pepo (Zucchini)cpewmB311
Cla014691MELO3C016053.2Melon (DHL92) v3.6.1medwmB181
Cla014691MELO3C021350.2Melon (DHL92) v3.6.1medwmB085
Cla014691Carg07198Silver-seed gourdcarwmB0106
Cla014691BhiUN245G45Wax gourdwgowmB161
Cla014691Bhi01G000690Wax gourdwgowmB170
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla014691Cla021716Watermelon (97103) v1wmwmB022
Cla014691Cla009323Watermelon (97103) v1wmwmB037
The following block(s) are covering this gene:
GeneOrganismBlock
Cla014691Cucumber (Gy14) v1cgywmB672
Cla014691Cucurbita maxima (Rimu)cmawmB856
Cla014691Wild cucumber (PI 183967)cpiwmB587
Cla014691Cucumber (Chinese Long) v2cuwmB191
Cla014691Cucurbita pepo (Zucchini)cpewmB824
Cla014691Cucumber (Gy14) v2cgybwmB530
Cla014691Silver-seed gourdcarwmB0861
Cla014691Cucumber (Chinese Long) v3cucwmB593