Cla013575 (gene) Watermelon (97103) v1

NameCla013575
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionProtein EPIDERMAL PATTERNING FACTOR 1 (AHRD V1 ***- EPF1_ARATH)
LocationChr2 : 27905160 .. 27905565 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCACAAAGGCTTTACTACTTCTGGTCGCTGCTGTACTCCTGATCCTCCTAGTCGCACCAGCCATGCCCGCCAGACAACTCTCAACTCGTACCTATCTTTTCTTTTTCCAAACATTATTATTATAAAGACAACATTTAAATTGCATTTTTAAACAAACCCATATCACAAAATTGATTCTATTTTTATTATGCAGATAACAATAATAGTCGCAAGCGAATGAGAGGAGAGACGGTGGAAATTGCAGGATCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCCCCATGCAGGCTCGTGATGGTTAGGTTCTTTTGTGCTTCGGTTGAAGACTCAGAGGCTTGCCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGA

mRNA sequence

ATGAAATCCACAAAGGCTTTACTACTTCTGGTCGCTGCTGTACTCCTGATCCTCCTAGTCGCACCAGCCATGCCCGCCAGACAACTCTCAACTCATAACAATAATAGTCGCAAGCGAATGAGAGGAGAGACGGTGGAAATTGCAGGATCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCCCCATGCAGGCTCGTGATGGTTAGGTTCTTTTGTGCTTCGGTTGAAGACTCAGAGGCTTGCCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGA

Coding sequence (CDS)

ATGAAATCCACAAAGGCTTTACTACTTCTGGTCGCTGCTGTACTCCTGATCCTCCTAGTCGCACCAGCCATGCCCGCCAGACAACTCTCAACTCATAACAATAATAGTCGCAAGCGAATGAGAGGAGAGACGGTGGAAATTGCAGGATCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCCCCATGCAGGCTCGTGATGGTTAGGTTCTTTTGTGCTTCGGTTGAAGACTCAGAGGCTTGCCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGA

Protein sequence

MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNSRKRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP
BLAST of Cla013575 vs. Swiss-Prot
Match: EPF1_ARATH (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-25
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = 1

Query: 5   KALLLLVAAVLLIL--LVAPAMPARQLSTHNNNS------RKRMRGETVEIAGSRLPDCS 64
           K+LLLL   +      L+A  +P     +H++        R+R R +TV++AGSRLPDCS
Sbjct: 2   KSLLLLAFFLSFFFGSLLARHLPTSSHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCS 61

Query: 65  HACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           HACGSCSPCRLVMV F CASVE++E CP+AYKCMC++KS+PVP
Sbjct: 62  HACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

BLAST of Cla013575 vs. Swiss-Prot
Match: EPFL7_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-11
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1

Query: 48  AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           +GS +PDCS+ACG C PC+LV++   C++   SEACPL YKC+C  K + VP
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

BLAST of Cla013575 vs. Swiss-Prot
Match: EPF2_ARATH (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-10
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1

Query: 28  QLSTHNNNSRKRMRGETVEI--AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPL 87
           Q  TH+     +  G  +E+   GS LPDCS+ACG+CSPC+ VM+ F C+    +E+C +
Sbjct: 47  QAQTHHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSV---AESCSV 106

Query: 88  AYKCMCSHKSFPVP 100
            Y+C C  + + VP
Sbjct: 107 IYRCTCRGRYYHVP 117

BLAST of Cla013575 vs. TrEMBL
Match: A0A078FNB7_BRANA (BnaA09g43550D protein OS=Brassica napus GN=BnaA09g43550D PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS---RKRMRGETVEIAGSRLPDCSH 60
           MKS   L+L ++  +  +  +   P     +HNN+    +++ R +TV++AGSRLPDCSH
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRHFPTHPYPSHNNHHVGMKRQRRPDTVQVAGSRLPDCSH 60

Query: 61  ACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           ACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  ACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCKNKSYPVP 102

BLAST of Cla013575 vs. TrEMBL
Match: M4EQS2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS---RKRMRGETVEIAGSRLPDCSH 60
           MKS   L+L ++  +  +  +   P     +HNN+    +++ R +TV++AGSRLPDCSH
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRHFPTHPYPSHNNHHVGMKRQRRPDTVQVAGSRLPDCSH 60

Query: 61  ACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           ACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  ACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCKNKSYPVP 102

BLAST of Cla013575 vs. TrEMBL
Match: A0A078CXT8_BRANA (BnaC08g36150D protein OS=Brassica napus GN=BnaC08g36150D PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS--------RKRMRGETVEIAGSRL 60
           MKS   L+L ++  +  +  +   P     +HN++         +++ R +TV++AGSRL
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRNFPTHPYPSHNHHHVGMMGRTMKRQRRPDTVQVAGSRL 60

Query: 61  PDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           PDCSHACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  PDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCKNKSYPVP 107

BLAST of Cla013575 vs. TrEMBL
Match: A0A0D3DWB3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=EPF1 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS--------RKRMRGETVEIAGSRL 60
           MKS   L+L ++  +  +  +   P     +HN++         +++ R +TV++AGSRL
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRNFPTHPYPSHNHHHVGMMGRKMKRQRRPDTVQVAGSRL 60

Query: 61  PDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           PDCSHACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  PDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCKNKSYPVP 107

BLAST of Cla013575 vs. TrEMBL
Match: V4M2U3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002128mg PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-23
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS---------RKRMRGETVEIAGSR 60
           MKS   L+L ++  L  L      P     +H++           +++ R +TV++AGSR
Sbjct: 1   MKSLLVLVLFLSFFLCSLFATRHFPKPPYPSHHHVGMTSTTGTLLKRQRRPDTVQVAGSR 60

Query: 61  LPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           LPDCSHACGSCSPCRLVMV F CAS+E++E CP+AYKCMC++KS+PVP
Sbjct: 61  LPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSYPVP 108

BLAST of Cla013575 vs. NCBI nr
Match: gi|685366897|ref|XP_009117463.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Brassica rapa])

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS---RKRMRGETVEIAGSRLPDCSH 60
           MKS   L+L ++  +  +  +   P     +HNN+    +++ R +TV++AGSRLPDCSH
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRHFPTHPYPSHNNHHVGMKRQRRPDTVQVAGSRLPDCSH 60

Query: 61  ACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           ACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  ACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCKNKSYPVP 102

BLAST of Cla013575 vs. NCBI nr
Match: gi|729405510|ref|XP_010555134.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Tarenaya hassleriana])

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 60/110 (54.55%), Postives = 77/110 (70.00%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS------RKRMRG-----ETVEIAG 60
           MKST  LLLL+  VL+ +  +   P    S H + S      R  +RG     +TV++AG
Sbjct: 18  MKSTLRLLLLLFLVLVGVSRSRPHPHSLSSGHRHGSVSGRANRGSLRGGRKGQDTVQVAG 77

Query: 61  SRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           SRLPDCSHACGSCSPCRLVMV F CAS+E++E CP+AYKCMC++KS+P+P
Sbjct: 78  SRLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSYPIP 127

BLAST of Cla013575 vs. NCBI nr
Match: gi|15226414|ref|NP_179684.1| (protein EPIDERMAL PATTERNING FACTOR 1 [Arabidopsis thaliana])

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-23
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1

Query: 5   KALLLLVAAVLLIL--LVAPAMPARQLSTHNNNS------RKRMRGETVEIAGSRLPDCS 64
           K+LLLL   +      L+A  +P     +H++        R+R R +TV++AGSRLPDCS
Sbjct: 2   KSLLLLAFFLSFFFGSLLARHLPTSSHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCS 61

Query: 65  HACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           HACGSCSPCRLVMV F CASVE++E CP+AYKCMC++KS+PVP
Sbjct: 62  HACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

BLAST of Cla013575 vs. NCBI nr
Match: gi|922550735|ref|XP_013603349.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS--------RKRMRGETVEIAGSRL 60
           MKS   L+L ++  +  +  +   P     +HN++         +++ R +TV++AGSRL
Sbjct: 37  MKSFLLLVLFLSFFVGSIFASRNFPTHPYPSHNHHHVGMMGRKMKRQRRPDTVQVAGSRL 96

Query: 61  PDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           PDCSHACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 97  PDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCKNKSYPVP 143

BLAST of Cla013575 vs. NCBI nr
Match: gi|923877172|ref|XP_013711492.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Brassica napus])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1

Query: 1   MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS--------RKRMRGETVEIAGSRL 60
           MKS   L+L ++  +  +  +   P     +HN++         +++ R +TV++AGSRL
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRNFPTHPYPSHNHHHVGMMGRTMKRQRRPDTVQVAGSRL 60

Query: 61  PDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 100
           PDCSHACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  PDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCKNKSYPVP 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EPF1_ARATH1.4e-2555.34Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1[more]
EPFL7_ARATH4.5e-1153.85EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana GN=EPFL7 PE=1... [more]
EPF2_ARATH3.8e-1040.54Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A078FNB7_BRANA1.1e-2452.94BnaA09g43550D protein OS=Brassica napus GN=BnaA09g43550D PE=4 SV=1[more]
M4EQS2_BRARP1.1e-2452.94Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078CXT8_BRANA2.7e-2349.53BnaC08g36150D protein OS=Brassica napus GN=BnaC08g36150D PE=4 SV=1[more]
A0A0D3DWB3_BRAOL2.7e-2349.53Uncharacterized protein OS=Brassica oleracea var. oleracea GN=EPF1 PE=4 SV=1[more]
V4M2U3_EUTSA4.7e-2350.00Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002128mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|685366897|ref|XP_009117463.1|1.6e-2452.94PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Brassica rapa][more]
gi|729405510|ref|XP_010555134.1|1.0e-2354.55PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Tarenaya hassleriana][more]
gi|15226414|ref|NP_179684.1|2.3e-2355.34protein EPIDERMAL PATTERNING FACTOR 1 [Arabidopsis thaliana][more]
gi|922550735|ref|XP_013603349.1|3.9e-2349.53PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 isoform X1 [Brassica oleracea v... [more]
gi|923877172|ref|XP_013711492.1|3.9e-2349.53PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Brassica napus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000122 negative regulation of stomatal complex development
biological_process GO:0010375 stomatal complex patterning
biological_process GO:0010374 stomatal complex development
biological_process GO:0007275 multicellular organism development
biological_process GO:0010052 guard cell differentiation
biological_process GO:0008150 biological_process
biological_process GO:0090626 plant epidermis morphogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0019901 protein kinase binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013575Cla013575.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33109FAMILY NOT NAMEDcoord: 34..99
score: 5.3
NoneNo IPR availablePANTHERPTHR33109:SF12SUBFAMILY NOT NAMEDcoord: 34..99
score: 5.3
NoneNo IPR availablePFAMPF17181EPFcoord: 48..97
score: 5.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla013575Cla007743Watermelon (97103) v1wmwmB158