Cla007743 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007743
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein EPIDERMAL PATTERNING FACTOR 1 (AHRD V1 ***- EPF1_ARATH)
Location	Chr2 : 788019 .. 788309 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGATTTCTTATGCGTAGGTCATGGCCACCACCGCAAGGTAGCAACAGCAATAACCTCTGGCAAAGCGGCAATGGTGGTGAAAGAGAAGGTTGCGATAGGGAGAAAAGGGGCAAAGACGGTTGAAGTAGCGGGGTCGAGCTTGCCGGATTGTTCACATGCGTGTGGCTCATGTTCGCCGTGTAGATTAGTGATGATAAGCTTTGTGTGTGCTTCACTACAAGAGGCTGAAACATGCCCAATGACTTATAGATGCATGTGTAATAACAAGTCCTATCCTGTTCCTTGA

mRNA sequence

ATGTTGGATTTCTTATGCGTAGGTCATGGCCACCACCGCAAGGTAGCAACAGCAATAACCTCTGGCAAAGCGGCAATGGTGGTGAAAGAGAAGGTTGCGATAGGGAGAAAAGGGGCAAAGACGGTTGAAGTAGCGGGGTCGAGCTTGCCGGATTGTTCACATGCGTGTGGCTCATGTTCGCCGTGTAGATTAGTGATGATAAGCTTTGTGTGTGCTTCACTACAAGAGGCTGAAACATGCCCAATGACTTATAGATGCATGTGTAATAACAAGTCCTATCCTGTTCCTTGA

Coding sequence (CDS)

ATGTTGGATTTCTTATGCGTAGGTCATGGCCACCACCGCAAGGTAGCAACAGCAATAACCTCTGGCAAAGCGGCAATGGTGGTGAAAGAGAAGGTTGCGATAGGGAGAAAAGGGGCAAAGACGGTTGAAGTAGCGGGGTCGAGCTTGCCGGATTGTTCACATGCGTGTGGCTCATGTTCGCCGTGTAGATTAGTGATGATAAGCTTTGTGTGTGCTTCACTACAAGAGGCTGAAACATGCCCAATGACTTATAGATGCATGTGTAATAACAAGTCCTATCCTGTTCCTTGA

Protein sequence

MLDFLCVGHGHHRKVATAITSGKAAMVVKEKVAIGRKGAKTVEVAGSSLPDCSHACGSCSPCRLVMISFVCASLQEAETCPMTYRCMCNNKSYPVP

Homology

[Close]

BLAST of Cla007743 vs. Swiss-Prot
Match: EPF1_ARATH (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-26
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 36  RKGAKTVEVAGSSLPDCSHACGSCSPCRLVMISFVCASLQEAETCPMTYRCMCNNKSYPV 95
           R+   TV+VAGS LPDCSHACGSCSPCRLVM+SFVCAS++EAETCPM Y+CMCNNKSYPV
Sbjct: 44  RRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPV 103

Query: 96  P 97
           P
Sbjct: 104 P 104

[Close]

BLAST of Cla007743 vs. Swiss-Prot
Match: EPF2_ARATH (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 31  KVAIGRKGAKTVEV--AGSSLPDCSHACGSCSPCRLVMISFVCASLQEAETCPMTYRCMC 90
           K  I + G   +E+   GSSLPDCS+ACG+CSPC+ VMISF C+    AE+C + YRC C
Sbjct: 53  KKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECS---VAESCSVIYRCTC 112

Query: 91  NNKSYPVP 97
             + Y VP
Sbjct: 113 RGRYYHVP 117

[Close]

BLAST of Cla007743 vs. Swiss-Prot
Match: EPFL7_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-12
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 43  EVAGSSLPDCSHACGSCSPCRLVMISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           + +GSS+PDCS+ACG C PC+LV+IS  C++   +E CP+ Y+C+C  K Y VP
Sbjct: 119 KASGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

[Close]

BLAST of Cla007743 vs. Swiss-Prot
Match: EPFL6_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-06
Identity = 27/77 (35.06%), Postives = 38/77 (49.35%), Query Frame = 1


Query: 22  GKAAMVVKEKVAIGRKGAKT-----VEVAGSSLPDCSHACGSCSPCRLVMISFVCASLQE 81
           GK+ +V+K+   IG +  +      +   GSS P CS  CG C+PC+ V +     +   
Sbjct: 78  GKSTVVIKKTRKIGDRSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVT 137

Query: 82  AETCPMTYRCMCNNKSY 94
           AE  P  +RC C NK Y
Sbjct: 138 AEYYPEAWRCKCGNKLY 154

[Close]

BLAST of Cla007743 vs. TrEMBL
Match: A0A0A0K5P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047370 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-35
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAAMVV-KEKVAI----GRKGAKTVEVAGSSLPDCSHACGSCSPCR 68
           HGHHRK A A +SGKAAMVV KEK A+    GRKG +TVEVAGSSLPDCSHACGSCSPCR
Sbjct: 33  HGHHRKGA-ASSSGKAAMVVVKEKAAMMTRMGRKGTETVEVAGSSLPDCSHACGSCSPCR 92

Query: 69  LVMISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           LVMISFVCASLQEAETCPM YRCMCNNKSYPVP
Sbjct: 93  LVMISFVCASLQEAETCPMAYRCMCNNKSYPVP 124

[Close]

BLAST of Cla007743 vs. TrEMBL
Match: B9I667_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13970g PE=4 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAA---MVVKEKVAIGRKGAKTVEVAGSSLPDCSHACGSCSPCRLV 68
           HGHH      I  G  A    + +E+    R+GA TV++AGSSLPDCSHACGSCSPCRLV
Sbjct: 38  HGHHHSTQPRIKDGTVAKPNFLYRERWPEKRRGADTVQIAGSSLPDCSHACGSCSPCRLV 97

Query: 69  MISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           M+SF+CASL+EAETCPM Y+CMC+NKSYPVP
Sbjct: 98  MVSFICASLEEAETCPMAYKCMCDNKSYPVP 128

[Close]

BLAST of Cla007743 vs. TrEMBL
Match: A0A067JJL6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25818 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 60/91 (65.93%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAAM---VVKEKVAIGRKGAKTVEVAGSSLPDCSHACGSCSPCRLV 68
           HGHHR        G         +E  A  R+G  TVE+AGSSLPDCSHACGSCSPCRLV
Sbjct: 34  HGHHRSAQARTRDGVTVANPNFYREIRATKRRGPDTVEIAGSSLPDCSHACGSCSPCRLV 93

Query: 69  MISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           M+SFVCASL+EAETCPM Y+CMC NKSYPVP
Sbjct: 94  MVSFVCASLEEAETCPMAYKCMCRNKSYPVP 124

[Close]

BLAST of Cla007743 vs. TrEMBL
Match: A0A067E1A9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042877mg PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 9  HGHHRKVATAITSGKAAMVVKEKV------AIGRKGAKTVEVAGSSLPDCSHACGSCSPC 68
          HGHH+    + +  +     + K        + RKGA+T+++AGSSLPDCSHACGSCSPC
Sbjct: 1  HGHHQHAPHSKSLSRDVRAARPKFYWERIPIMKRKGAETLQIAGSSLPDCSHACGSCSPC 60

Query: 69 RLVMISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
          RLVM+SFVCASL+EAETCPM Y+CMCNNKSYPVP
Sbjct: 61 RLVMVSFVCASLEEAETCPMAYKCMCNNKSYPVP 94

[Close]

BLAST of Cla007743 vs. TrEMBL
Match: V4TJF5_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10017558mg PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAAMVVKEKV------AIGRKGAKTVEVAGSSLPDCSHACGSCSPC 68
           HGHH+    + +  +     + K        + RKGA+T+++AGSSLPDCSHACGSCSPC
Sbjct: 32  HGHHQHAPHSKSLSRDVRAARPKFYWERIPIMKRKGAETLQIAGSSLPDCSHACGSCSPC 91

Query: 69  RLVMISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           RLVM+SFVCASL+EAETCPM Y+CMCNNKSYPVP
Sbjct: 92  RLVMVSFVCASLEEAETCPMAYKCMCNNKSYPVP 125

[Close]

BLAST of Cla007743 vs. NCBI nr
Match: gi|449438080|ref|XP_004136818.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-35
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAAMVV-KEKVAI----GRKGAKTVEVAGSSLPDCSHACGSCSPCR 68
           HGHHRK A A +SGKAAMVV KEK A+    GRKG +TVEVAGSSLPDCSHACGSCSPCR
Sbjct: 33  HGHHRKGA-ASSSGKAAMVVVKEKAAMMTRMGRKGTETVEVAGSSLPDCSHACGSCSPCR 92

Query: 69  LVMISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           LVMISFVCASLQEAETCPM YRCMCNNKSYPVP
Sbjct: 93  LVMISFVCASLQEAETCPMAYRCMCNNKSYPVP 124

[Close]

BLAST of Cla007743 vs. NCBI nr
Match: gi|659110641|ref|XP_008455333.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-34
Identity = 77/92 (83.70%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAAMVV-KEKVAI---GRKGAKTVEVAGSSLPDCSHACGSCSPCRL 68
           HGHHRK A +  SGKAAMVV  EKV +   GRKG +TVEVAGSSLPDCSHACGSCSPCRL
Sbjct: 33  HGHHRKGAAS--SGKAAMVVVNEKVTMMTMGRKGTETVEVAGSSLPDCSHACGSCSPCRL 92

Query: 69  VMISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           VMISFVCASLQEAETCPM YRCMCNNKSYPVP
Sbjct: 93  VMISFVCASLQEAETCPMAYRCMCNNKSYPVP 122

[Close]

BLAST of Cla007743 vs. NCBI nr
Match: gi|743904256|ref|XP_011045494.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Populus euphratica])

HSP 1 Score: 135.6 bits (340), Expect = 4.7e-29
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAA---MVVKEKVAIGRKGAKTVEVAGSSLPDCSHACGSCSPCRLV 68
           HGHH      I  G  A    + +E+    R+GA TV++AGSSLPDCSHACGSCSPCRLV
Sbjct: 38  HGHHHSTQPRIKDGTVAKPNFLYRERWPAKRRGADTVQIAGSSLPDCSHACGSCSPCRLV 97

Query: 69  MISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           M+SF+CASL+EAETCPM Y+CMCNNKSYPVP
Sbjct: 98  MVSFICASLEEAETCPMAYKCMCNNKSYPVP 128

[Close]

BLAST of Cla007743 vs. NCBI nr
Match: gi|566201242|ref|XP_002319362.2| (hypothetical protein POPTR_0013s13970g [Populus trichocarpa])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAA---MVVKEKVAIGRKGAKTVEVAGSSLPDCSHACGSCSPCRLV 68
           HGHH      I  G  A    + +E+    R+GA TV++AGSSLPDCSHACGSCSPCRLV
Sbjct: 38  HGHHHSTQPRIKDGTVAKPNFLYRERWPEKRRGADTVQIAGSSLPDCSHACGSCSPCRLV 97

Query: 69  MISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           M+SF+CASL+EAETCPM Y+CMC+NKSYPVP
Sbjct: 98  MVSFICASLEEAETCPMAYKCMCDNKSYPVP 128

[Close]

BLAST of Cla007743 vs. NCBI nr
Match: gi|643709752|gb|KDP24161.1| (hypothetical protein JCGZ_25818 [Jatropha curcas])

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 60/91 (65.93%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 9   HGHHRKVATAITSGKAAM---VVKEKVAIGRKGAKTVEVAGSSLPDCSHACGSCSPCRLV 68
           HGHHR        G         +E  A  R+G  TVE+AGSSLPDCSHACGSCSPCRLV
Sbjct: 34  HGHHRSAQARTRDGVTVANPNFYREIRATKRRGPDTVEIAGSSLPDCSHACGSCSPCRLV 93

Query: 69  MISFVCASLQEAETCPMTYRCMCNNKSYPVP 97
           M+SFVCASL+EAETCPM Y+CMC NKSYPVP
Sbjct: 94  MVSFVCASLEEAETCPMAYKCMCRNKSYPVP 124

The following BLAST results are available for this feature:

BLAST of Cla007743 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EPF1_ARATH	6.3e-26	81.97	Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1	[more]
EPF2_ARATH	1.8e-12	51.47	Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=1 SV=1	[more]
EPFL7_ARATH	5.2e-12	51.85	EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana GN=EPFL7 PE=1...	[more]
EPFL6_ARATH	7.2e-06	35.06	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana GN=EPFL6 PE=1...	[more]

BLAST of Cla007743 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5P8_CUCSA	2.3e-35	84.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047370 PE=4 SV=1	[more]
B9I667_POPTR	2.1e-28	64.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13970g PE=4 SV=2	[more]
A0A067JJL6_JATCU	1.4e-27	65.93	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25818 PE=4 SV=1	[more]
A0A067E1A9_CITSI	1.8e-27	61.70	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042877mg PE=4 S...	[more]
V4TJF5_9ROSI	1.8e-27	61.70	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10017558mg PE=...	[more]

BLAST of Cla007743 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438080\|ref\|XP_004136818.1\|	3.3e-35	84.95	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis sativus]	[more]
gi\|659110641\|ref\|XP_008455333.1\|	2.2e-34	83.70	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo]	[more]
gi\|743904256\|ref\|XP_011045494.1\|	4.7e-29	65.93	PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Populus euphratica]	[more]
gi\|566201242\|ref\|XP_002319362.2\|	3.0e-28	64.84	hypothetical protein POPTR_0013s13970g [Populus trichocarpa]	[more]
gi\|643709752\|gb\|KDP24161.1\|	2.0e-27	65.93	hypothetical protein JCGZ_25818 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development
biological_process	GO:2000122	negative regulation of stomatal complex development
biological_process	GO:0010375	stomatal complex patterning
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0008150	biological_process
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0090626	plant epidermis morphogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0019901	protein kinase binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007743	Cla007743.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33109	FAMILY NOT NAMED	coord: 36..96 score: 9.4
None	No IPR available	PANTHER	PTHR33109:SF12	SUBFAMILY NOT NAMED	coord: 36..96 score: 9.4
None	No IPR available	PFAM	PF17181	EPF	coord: 45..94 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007743	Cla97C02G043230	Watermelon (97103) v2	wmwmbB323
Cla007743	Cla97C02G027540	Watermelon (97103) v2	wmwmbB324
Cla007743	Csa7G047370	Cucumber (Chinese Long) v2	cuwmB596
Cla007743	ClCG02G001120	Watermelon (Charleston Gray)	wcgwmB206
Cla007743	ClCG02G017500	Watermelon (Charleston Gray)	wcgwmB204
Cla007743	CSPI07G04500	Wild cucumber (PI 183967)	cpiwmB614
Cla007743	Cucsa.147790	Cucumber (Gy14) v1	cgywmB262
Cla007743	CmaCh02G001120	Cucurbita maxima (Rimu)	cmawmB598
Cla007743	CmaCh11G018700	Cucurbita maxima (Rimu)	cmawmB122
Cla007743	CmoCh02G001120	Cucurbita moschata (Rifu)	cmowmB590
Cla007743	CmoCh19G010140	Cucurbita moschata (Rifu)	cmowmB492
Cla007743	CmoCh11G019470	Cucurbita moschata (Rifu)	cmowmB110
Cla007743	Lsi10G008800	Bottle gourd (USVL1VR-Ls)	lsiwmB075
Cla007743	Lsi11G015390	Bottle gourd (USVL1VR-Ls)	lsiwmB100
Cla007743	Cp4.1LG15g08020	Cucurbita pepo (Zucchini)	cpewmB264
Cla007743	Cp4.1LG04g03040	Cucurbita pepo (Zucchini)	cpewmB666
Cla007743	CsGy7G004110	Cucumber (Gy14) v2	cgybwmB558
Cla007743	MELO3C028633.2	Melon (DHL92) v3.6.1	medwmB237
Cla007743	Carg13575	Silver-seed gourd	carwmB0032
Cla007743	Carg19229	Silver-seed gourd	carwmB0880
Cla007743	CsaV3_7G004320	Cucumber (Chinese Long) v3	cucwmB626
Cla007743	Bhi05G001597	Wax gourd	wgowmB274

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla007743	Cla013575	Watermelon (97103) v1	wmwmB158

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007743	Silver-seed gourd	carwmB0718
Cla007743	Wax gourd	wgowmB404
Cla007743	Cucurbita maxima (Rimu)	cmawmB499
Cla007743	Melon (DHL92) v3.5.1	mewmB126
Cla007743	Melon (DHL92) v3.5.1	mewmB245
Cla007743	Cucumber (Chinese Long) v2	cuwmB141
Cla007743	Cucurbita pepo (Zucchini)	cpewmB730