Cla013517 (gene) Watermelon (97103) v1

Overview
NameCla013517
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSmall ubiquitin-related modifier 2 (AHRD V1 ***- F4K3D6_ARATH); contains Interpro domain(s) IPR000626 Ubiquitin
LocationChr2 : 28489760 .. 28491852 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGGGTCACAAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGTTGGTTTCTTTCTTGAGAAATTAAGTTCGTGCTTGAACCTTTTTAATGCTGATGTTTCTTTCATTTGATTTTGATCGCTTGACCTTTTCTGGCTTCTGATCTTTTCTTTCTCTTTTGGATATGTCGGTTAGGCAGCAGGCACCCAAGTAGTAGTATAAATTCTAGGCTTGTGGGGTTTTATTATTGAATCGGTTTTTGGTTGTTCGCGAAATTTGAAGTCCGAAAAAAGGGAAGAAATGGTTAATTGTTTTGAAATTGGAGTTATATGTGACAGGTGCGATAGTTATATTTTGCAATTATAATCTTTCTAAAACTTTCCCTCTGAGAATCTTGCAAATCAAATTAAGTGAAGGGTGGAATTCTTGTTTCCATGTTTGTGTTATATTTGCAGTTCTTTTACGCATTTGGACTGTTCCATTTTTTTCTTTCTGTTTGTTATACTCACTCTGGGGAACAAAATCCTGTCGTAGCTTTGATTGATCTCTTGGAAAAGATTTCGAAGCTGCCCTGCTGTTATAAACTACTATCTGGAATACAAGACTGAGTGTTGGTCCTCCCGTCATGTCCCAGATAAGCTAGTGATTCTTTGATGTCCTAATATACTTTTCTTGGGATGGATTTTGCTGGGATTATTGAGTTTTGGGTCTATTGACTACAGATTGACCTTTTGATTCTTTTGAATAGCGCTTTAGGTGTGTTTGTTTAGAATGAATACTAAATCAGTTGTGGGGTTTCTGTGAATTATGGTAGTTTTCTTTTGTTCATTTTGTTGAAATCTATTACGAAATAATCTTCTTCTTCCTTCTGCCTTTTTCTTTTTCTTTTTCTTTTTCCTTTTTCTTAATGTCACTTCCAATGAAGTAGTCTTGATGTATTTTAAAGATTCCAATATATGTGTTTTCAACCAAGCCTTAAAAAATAGAAAGGATATTTTAAGCTCCTATAGTTTCAGTTGAGCCACTTTATTATATTAAATAATAAGAATTGTACTGTAAAACCTGCCACATGCCGAAGTAAGTCTGTCAGCCATCTAAATAGTTTATATACCATGGAAATGTACATTTGTGCGGTCTGTTTTTTTTTTTTTTTTTTAGAAAGAAAGAAAAAAAAAAACCTTGATACAAATGATACAAATGATGATGATTTAATTGGAGGACTTGTTTAATCTATAAATTAAGTTTTTTTTTTTTTTAATTAAGGCAAGGAAGGGCATGGAGATTGAAGTGTTTATGAATGTTTTAGCTCCATTTCTGTCTCAATCTGTCCTGGAGTGCTTGATCCAATCTTTTTTCTTGTTTCATTGCGATTTTCTAGGGACTGAACCAAATGCTTAGCTCCATTTCTTGTTCTGACATACGTCTCAGTTTCTTTTTTCTTCTTTGTTTCACTTTATCTTTTACCGTTTCCTTTCAACCTCTTTCTTCTTTATCACGTTCTTCCTGCAATTATCAAACTCCTTTTTCCTTTTCGTTTCTTGTTGTTAATTACACCAATTAGTTGGTTAGAAATATGGTTCGGGAGCGTGATGTTTTTCTTGATCTCTTCCTGCAGTGTGGGATTCCTGTTGTAGCCTTATTTTTTGTACCCTTTAGTACATTCTTTCATTTTCTCAATAAAAGCTCAGTTTTTCACCAAAAAAATTATGAGTTTATATTCATGAAAGACTAACCCCTTAGTCCTCAATTTTTATTTACTTTAGGACGGAAATGAGGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTATTCGACGGACGTCGTCTTCGAGCAGAGCAAACCCCCGATGAGGTAATCCTTTTCTCTTATTATTTAAGCAATCCTATGCTAAATTCATGTATTTTTTCTTTTTTTTTTAATAAAAGCATGTACTTTTACCAGCTAGAGATGGAGGATGGGGATGAGATAGATGCAATGTTGCACCAGACTGGTGGATCTACTCGTTGA

mRNA sequence

ATGTCGGGGGTCACAAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGACGGAAATGAGGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTATTCGACGGACGTCGTCTTCGAGCAGAGCAAACCCCCGATGAGCTAGAGATGGAGGATGGGGATGAGATAGATGCAATGTTGCACCAGACTGGTGGATCTACTCGTTGA

Coding sequence (CDS)

ATGTCGGGGGTCACAAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGACGGAAATGAGGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTATTCGACGGACGTCGTCTTCGAGCAGAGCAAACCCCCGATGAGCTAGAGATGGAGGATGGGGATGAGATAGATGCAATGTTGCACCAGACTGGTGGATCTACTCGTTGA

Protein sequence

MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR
Homology
[Close]
BLAST of Cla013517 vs. Swiss-Prot
Match: SUMO1_ARATH (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-43
Identity = 85/93 (91.40%), Postives = 86/93 (92.47%), Query Frame = 1 

Query: 6  NTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFL 65
          +  QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFL
Sbjct: 2  SANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFL 61

Query: 66 FDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          FDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGGS
Sbjct: 62 FDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGS 94

[Close]
BLAST of Cla013517 vs. Swiss-Prot
Match: SUMO2_ARATH (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.0e-42
Identity = 85/91 (93.41%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 10  EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGR 69
           EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGR
Sbjct: 6   EEDKKP-DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGR 65

Query: 70  RLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           RLRAEQTPDELEMEDGDEIDAMLHQTGG  +
Sbjct: 66  RLRAEQTPDELEMEDGDEIDAMLHQTGGGAK 95

[Close]
BLAST of Cla013517 vs. Swiss-Prot
Match: SUMO1_ORYSJ (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-39
Identity = 81/91 (89.01%), Postives = 81/91 (89.01%), Query Frame = 1 

Query: 10 EEDKKP---NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLF 69
          EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+N+IAFLF
Sbjct: 6  EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLF 65

Query: 70 DGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          DGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 66 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96

[Close]
BLAST of Cla013517 vs. Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt3 PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-24
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 1 

Query: 5   TNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAF 64
           T    ++D KP+ +  HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ F
Sbjct: 21  TGDTSQQDVKPSTE--HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRF 80

Query: 65  LFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 100
           L DG R+R +QTP EL+MEDGD+I+A+L Q GG T
Sbjct: 81  LVDGERIRPDQTPAELDMEDGDQIEAVLEQLGGCT 113

[Close]
BLAST of Cla013517 vs. Swiss-Prot
Match: SUMO3_ARATH (Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana GN=SUMO3 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-20
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 11 EDKKPNDQS--AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 70
          +D KP DQ   AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 71 RRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
           R+   +TPDEL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]
BLAST of Cla013517 vs. TrEMBL
Match: A0A0A0KDV8_CUCSA (Small ubiquitin-related modifier OS=Cucumis sativus GN=Csa_6G157680 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 100

[Close]
BLAST of Cla013517 vs. TrEMBL
Match: V4U4M1_9ROSI (Small ubiquitin-related modifier OS=Citrus clementina GN=CICLE_v10017283mg PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.3e-46
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTNT QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LN
Sbjct: 1  MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          SIAFLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 61 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 97

[Close]
BLAST of Cla013517 vs. TrEMBL
Match: V7BPK6_PHAVU (Small ubiquitin-related modifier OS=Phaseolus vulgaris GN=PHAVU_006G047600g PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.8e-45
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTN   EEDKKP++Q AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD N
Sbjct: 1  MSGVTNNNNEEDKKPSEQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS
Sbjct: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 98

[Close]
BLAST of Cla013517 vs. TrEMBL
Match: B9IAK0_POPTR (Small ubiquitin-related modifier OS=Populus trichocarpa GN=POPTR_0014s15650g PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-44
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVT   QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+ N
Sbjct: 1   MSGVTGQPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ +
Sbjct: 61  SIAFLFDGRRLRGEQTPDELDMEDGDEIDAMLHQTGGAMK 100

[Close]
BLAST of Cla013517 vs. TrEMBL
Match: A0A0A0L2Y3_CUCSA (Small ubiquitin-related modifier OS=Cucumis sativus GN=Csa_3G073930 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.7e-44
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTN  QEEDKKP DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1  MSGVTN--QEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          SIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG
Sbjct: 61 SIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG 95

[Close]
BLAST of Cla013517 vs. NCBI nr
Match: gi|449466075|ref|XP_004150752.1| (PREDICTED: small ubiquitin-related modifier 1 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 100

[Close]
BLAST of Cla013517 vs. NCBI nr
Match: gi|659113027|ref|XP_008456407.1| (PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 5.5e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+R
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSSR 100

[Close]
BLAST of Cla013517 vs. NCBI nr
Match: gi|567910657|ref|XP_006447642.1| (hypothetical protein CICLE_v10017283mg [Citrus clementina])

HSP 1 Score: 192.6 bits (488), Expect = 3.3e-46
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTNT QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LN
Sbjct: 1  MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          SIAFLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 61 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 97

[Close]
BLAST of Cla013517 vs. NCBI nr
Match: gi|470136628|ref|XP_004304088.1| (PREDICTED: small ubiquitin-related modifier 1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-44
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGV +  QEEDKKPNDQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LN
Sbjct: 1   MSGVASQPQEEDKKPNDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG+ +
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAAQ 100

[Close]
BLAST of Cla013517 vs. NCBI nr
Match: gi|593691938|ref|XP_007146517.1| (hypothetical protein PHAVU_006G047600g [Phaseolus vulgaris])

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-44
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTN   EEDKKP++Q AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD N
Sbjct: 1  MSGVTNNNNEEDKKPSEQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS
Sbjct: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 98

The following BLAST results are available for this feature:
BLAST of Cla013517 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SUMO1_ARATH2.0e-4391.40Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2[more]
SUMO2_ARATH5.0e-4293.41Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1[more]
SUMO1_ORYSJ2.3e-3989.01Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1... [more]
PMT3_SCHPO3.6e-2455.79Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
SUMO3_ARATH2.4e-2055.06Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana GN=SUMO3 PE=1 SV=1[more]
BLAST of Cla013517 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDV8_CUCSA1.3e-49100.00Small ubiquitin-related modifier OS=Cucumis sativus GN=Csa_6G157680 PE=3 SV=1[more]
V4U4M1_9ROSI2.3e-4696.91Small ubiquitin-related modifier OS=Citrus clementina GN=CICLE_v10017283mg PE=3 ... [more]
V7BPK6_PHAVU9.8e-4592.86Small ubiquitin-related modifier OS=Phaseolus vulgaris GN=PHAVU_006G047600g PE=3... [more]
B9IAK0_POPTR2.2e-4490.00Small ubiquitin-related modifier OS=Populus trichocarpa GN=POPTR_0014s15650g PE=... [more]
A0A0A0L2Y3_CUCSA3.7e-4495.88Small ubiquitin-related modifier OS=Cucumis sativus GN=Csa_3G073930 PE=3 SV=1[more]
BLAST of Cla013517 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466075|ref|XP_004150752.1|1.9e-49100.00PREDICTED: small ubiquitin-related modifier 1 [Cucumis sativus][more]
gi|659113027|ref|XP_008456407.1|5.5e-4999.00PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo][more]
gi|567910657|ref|XP_006447642.1|3.3e-4696.91hypothetical protein CICLE_v10017283mg [Citrus clementina][more]
gi|470136628|ref|XP_004304088.1|1.4e-4491.00PREDICTED: small ubiquitin-related modifier 1-like [Fragaria vesca subsp. vesca][more]
gi|593691938|ref|XP_007146517.1|1.4e-4492.86hypothetical protein PHAVU_006G047600g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR022617Rad60/SUMO-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0016925 protein sumoylation
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
cellular_component GO:0044424 intracellular part
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005515 protein binding
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0031386 protein tag
molecular_function GO:0003674 molecular_function
molecular_function GO:0044389 ubiquitin-like protein ligase binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU05714watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU50581watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013517Cla013517.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU05714WMU05714transcribed_cluster
WMU50581WMU50581transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 22..93
score: 2.5
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 20..97
score: 15
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 22..92
score: 6.5
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 13..97
score: 3.6
NoneNo IPR availablePANTHERPTHR10562SMALL UBIQUITIN-RELATED MODIFIERcoord: 7..100
score: 5.2
NoneNo IPR availablePANTHERPTHR10562:SF26SUBFAMILY NOT NAMEDcoord: 7..100
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla013517Cla97C02G043880Watermelon (97103) v2wmwmbB316
Cla013517Csa6G157680Cucumber (Chinese Long) v2cuwmB514
Cla013517MELO3C019737Melon (DHL92) v3.5.1mewmB121
Cla013517ClCG02G018070Watermelon (Charleston Gray)wcgwmB197
Cla013517CSPI06G12910Wild cucumber (PI 183967)cpiwmB532
Cla013517CSPI06G22590Wild cucumber (PI 183967)cpiwmB540
Cla013517Cucsa.185060Cucumber (Gy14) v1cgywmB356
Cla013517Cucsa.384750Cucumber (Gy14) v1cgywmB698
Cla013517CmaCh02G000670Cucurbita maxima (Rimu)cmawmB593
Cla013517CmaCh20G002320Cucurbita maxima (Rimu)cmawmB524
Cla013517CmaCh19G010420Cucurbita maxima (Rimu)cmawmB500
Cla013517CmoCh20G002530Cucurbita moschata (Rifu)cmowmB513
Cla013517CmoCh19G010710Cucurbita moschata (Rifu)cmowmB493
Cla013517CmoCh02G000650Cucurbita moschata (Rifu)cmowmB586
Cla013517Lsi10G015710Bottle gourd (USVL1VR-Ls)lsiwmB078
Cla013517Lsi11G016770Bottle gourd (USVL1VR-Ls)lsiwmB108
Cla013517Cp4.1LG16g07520Cucurbita pepo (Zucchini)cpewmB303
Cla013517Cp4.1LG05g15320Cucurbita pepo (Zucchini)cpewmB724
Cla013517Cp4.1LG15g08540Cucurbita pepo (Zucchini)cpewmB265
Cla013517CsGy6G021820Cucumber (Gy14) v2cgybwmB487
Cla013517CsGy6G012990Cucumber (Gy14) v2cgybwmB481
Cla013517MELO3C031071.2Melon (DHL92) v3.6.1medwmB409
Cla013517MELO3C019737.2Melon (DHL92) v3.6.1medwmB106
Cla013517Carg15714Silver-seed gourdcarwmB0530
Cla013517Carg13617Silver-seed gourdcarwmB0030
Cla013517CsaV3_6G037710Cucumber (Chinese Long) v3cucwmB546
Cla013517CsaV3_6G015370Cucumber (Chinese Long) v3cucwmB538
Cla013517Bhi05G001811Wax gourdwgowmB282
Cla013517Bhi10G000804Wax gourdwgowmB396
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla013517Watermelon (97103) v1wmwmB093
Cla013517Watermelon (97103) v1wmwmB109
Cla013517Cucumber (Gy14) v1cgywmB413
Cla013517Cucurbita maxima (Rimu)cmawmB124
Cla013517Cucurbita moschata (Rifu)cmowmB112
Cla013517Cucurbita moschata (Rifu)cmowmB199
Cla013517Watermelon (Charleston Gray)wcgwmB245
Cla013517Watermelon (Charleston Gray)wcgwmB388
Cla013517Cucumber (Chinese Long) v2cuwmB522
Cla013517Cucurbita pepo (Zucchini)cpewmB054
Cla013517Cucurbita pepo (Zucchini)cpewmB668
Cla013517Silver-seed gourdcarwmB0389
Cla013517Cucumber (Chinese Long) v3cucwmB082
Cla013517Watermelon (97103) v2wmwmbB339