CSPI06G12910 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G12910
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSmall ubiquitin-related modifier
LocationChr6 : 11278515 .. 11280823 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATTCCCTCTTTTTGACGAAGCGGAAATTGGGAAAATTGGAGCCCTAATTCTGGTAAATCGGCGAAGATTGAAGAATGTCGGGGGTCACGAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGTTGCTTTCTATTCTTTCGAATTTAACTTCATGCTTCAACACTTTCAATTCTGTTTTTCCTTTCATTTGCTTTTTGATCCGTTTTACGTCTTTTTGCCGTCTCATGTTTTCTTTCTCTTTTGGATACCTCGGATAGACACTGGAGACACCCAGTACAAGTTTAAATTATTGGTTGTGAGACACCTAAATAGAAGTATAAATTATAGGTTTTGATGTTCTATTCTTGAATTGGGTTTTGGTTGCTCGCGAATTTTGAAGCCCGAAAAAGGGGAGAATATGGTTAATCGTTCTAAAGTTGGAATTATATTTGATAGGTGCAATAGCTTTATTTTTCAATTATCACAATCGTTCTATAATTTTCCCTCTCAGGATCTAGTAAGTCCAATTAACTGACGGGTGGAATTCTAGTTTCCATTTCTTTGAGTAATATTTGAGATTTGGCATTCAGACTGTTCCATTTTTTCTTTCTGTTTGTTATACTCACCCTGGGAACAAAATCTTGCCGTAGTTCTGTTTTTGTCTTTTGAAAAAGATCTTGAAGCTGCCATGGTGTTGTAAACTACTATCTAAGATGGAGTGTTTGTCCTGCTGCCGTGTCCCAGATAAGCTAGTGATTCTTTGATGTCTTTCTTGTATACTTTTCATTGAGATAGGTTTATCGAGTACCTGCTGGGATATAGCCTTGTTGAGTACTGAGTCTATTAACTACAGATTTTCTTTTTTTTTTAAATATTTTAAATAGCGCCTTTGTTGTGTTTGTTTAGCATGAATACTAAATCATTTGTGGGGTTTCTCTGAATTTTGGGAGTATTCTTTTGTTCATTTTGTTGGAATACATTAGGAAATATCATCTTCTTCTTCCTACTTTTCTTTTTATTATCTTTTAATATTATTTCCAATGAAGTGATGTTGATGTATTTCGAAGATTCAATTATATTTGTTTTAAACCGAGCCTTAGAATGGATATTTCATCGAATCTTTTTCTTGTCTCCTTGCAAACTTTCAGTGACTGAATCAACTTTCCTTTGTGAATCTGTCTCTTTACTCTGTTTTTCTCTGACATGTTTTCACTTCATCTTTTAGTTTTAACGTATCCTTTAAACCTTTCCCTTCTTCATCACGTTCTGCAATTATCATACTTCTTTTTTCCCTTTCTGTTAATTACACCAATTAGTATATTAAAAATAGTGTTCACGGGTGTAAATTTTTTCTTGATCTAGCTTGAGTTTGTGGGAGTAGACTTATTTTTTCTGTATGCCTTAGTAAATTCTTTTTTCTTCTCAGTAAAAGTTCAGTTTCACCCAAAAAAAAGTGTAAGTTTGTCTTTATGGAAGACTAACCCTTTAGACCTCAATATTGATTTTTTTATAGGATGGGAATGAGGTGTTCTTCAGGATTAAAAGAAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATAGACAATCTGTGGATTTGAACTCTATTGCTTTTCTATTTGATGGTCGTCGTCTTCGAGCAGAGCAAACTCCAGATGAGGTAACCCTTTTCTCTGACTTCACTCATAAATGTCCTATTCAAAAGGCCATGCATTTTTCTCTTACAAAACATGTATGTTTACCAGCTAGAAATGGAGGATGGGGATGAGATTGATGCAATGTTGCACCAGACAGGTGGATCGACTCGTTGAAATTCGTGGTGTTGGTTCTGCTCCTTTAATGCCAGTAATTTCATTGAATCGGGAAATGTGGGCATTTAGAGATTCTTGCAGGTTTATTATTAAGTGTAGATTTCTTAAAAAAGACTTCCCTATGTTTTAAGCTATATATTGTGAGGTCAATGGCTATTTTCTGGTCTCAGTTATTCGCTTGGCTCTTTGTATGGATGGAAGCTGTCAGTAGCATAGTCGGAAAGTTAAATACTTTGTAATCAGTCTCGTTTTTTCTTCACGTTGTGAGCTTTCTGATAACGAAATGCTAAGACCATATTGAAATTTGGTATACATTCCTCGGTCTTCCAGTTTTATCGTTTTGATCAAATTCATTTGAATGGTGAAATGATCTTGAAATCATAAGGAAATGGAAATGAAATGTTCTGTCGTGGAGAGTTTGTATTATATAAAGACCGACTCGTACATTCATTCTAACTTTTTTGAATTCAGGG

mRNA sequence

ATGTCGGGGGTCACGAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGATGGGAATGAGGTGTTCTTCAGGATTAAAAGAAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATAGACAATCTGTGGATTTGAACTCTATTGCTTTTCTATTTGATGGTCGTCGTCTTCGAGCAGAGCAAACTCCAGATGAGCTAGAAATGGAGGATGGGGATGAGATTGATGCAATGTTGCACCAGACAGGTGGATCGACTCGTTGA

Coding sequence (CDS)

ATGTCGGGGGTCACGAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGATGGGAATGAGGTGTTCTTCAGGATTAAAAGAAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATAGACAATCTGTGGATTTGAACTCTATTGCTTTTCTATTTGATGGTCGTCGTCTTCGAGCAGAGCAAACTCCAGATGAGCTAGAAATGGAGGATGGGGATGAGATTGATGCAATGTTGCACCAGACAGGTGGATCGACTCGTTGA
Homology
[Close]
BLAST of CSPI06G12910 vs. Swiss-Prot
Match: SUMO1_ARATH (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-42
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 6  NTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFL 65
          +  QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFL
Sbjct: 2  SANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFL 61

Query: 66 FDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          FDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGGS
Sbjct: 62 FDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGS 94

[Close]
BLAST of CSPI06G12910 vs. Swiss-Prot
Match: SUMO2_ARATH (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.6e-42
Identity = 85/91 (93.41%), Postives = 86/91 (94.51%), Query Frame = 1 

Query: 10  EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGR 69
           EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGR
Sbjct: 6   EEDKKP-DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGR 65

Query: 70  RLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           RLRAEQTPDELEMEDGDEIDAMLHQTGG  +
Sbjct: 66  RLRAEQTPDELEMEDGDEIDAMLHQTGGGAK 95

[Close]
BLAST of CSPI06G12910 vs. Swiss-Prot
Match: SUMO1_ORYSJ (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.8e-39
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 1 

Query: 10 EEDKKP---NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLF 69
          EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+N+IAFLF
Sbjct: 6  EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLF 65

Query: 70 DGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          DGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 66 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96

[Close]
BLAST of CSPI06G12910 vs. Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt3 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 1 

Query: 5   TNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAF 64
           T    ++D KP+ +  HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ F
Sbjct: 21  TGDTSQQDVKPSTE--HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRF 80

Query: 65  LFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 100
           L DG R+R +QTP EL+MEDGD+I+A+L Q GG T
Sbjct: 81  LVDGERIRPDQTPAELDMEDGDQIEAVLEQLGGCT 113

[Close]
BLAST of CSPI06G12910 vs. Swiss-Prot
Match: SUMO3_ARATH (Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana GN=SUMO3 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.4e-20
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 11 EDKKPNDQS--AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 70
          +D KP DQ   AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 71 RRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
           R+   +TPDEL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]
BLAST of CSPI06G12910 vs. TrEMBL
Match: A0A0A0KDV8_CUCSA (Small ubiquitin-related modifier OS=Cucumis sativus GN=Csa_6G157680 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 3.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 100

[Close]
BLAST of CSPI06G12910 vs. TrEMBL
Match: V4U4M1_9ROSI (Small ubiquitin-related modifier OS=Citrus clementina GN=CICLE_v10017283mg PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.9e-46
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTNT QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LN
Sbjct: 1  MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          SIAFLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 61 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 97

[Close]
BLAST of CSPI06G12910 vs. TrEMBL
Match: V7BPK6_PHAVU (Small ubiquitin-related modifier OS=Phaseolus vulgaris GN=PHAVU_006G047600g PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.8e-44
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTN   EEDKKP++Q AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD N
Sbjct: 1  MSGVTNNNNEEDKKPSEQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS
Sbjct: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 98

[Close]
BLAST of CSPI06G12910 vs. TrEMBL
Match: B9IAK0_POPTR (Small ubiquitin-related modifier OS=Populus trichocarpa GN=POPTR_0014s15650g PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.4e-44
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVT   QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+ N
Sbjct: 1   MSGVTGQPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ +
Sbjct: 61  SIAFLFDGRRLRGEQTPDELDMEDGDEIDAMLHQTGGAMK 100

[Close]
BLAST of CSPI06G12910 vs. TrEMBL
Match: A0A0A0L2Y3_CUCSA (Small ubiquitin-related modifier OS=Cucumis sativus GN=Csa_3G073930 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-43
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTN  QEEDKKP DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1  MSGVTN--QEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          SIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG
Sbjct: 61 SIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG 95

[Close]
BLAST of CSPI06G12910 vs. TAIR10
Match: AT4G26840.1 (AT4G26840.1 small ubiquitin-like modifier 1)

HSP 1 Score: 173.7 bits (439), Expect = 5.7e-44
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 6  NTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFL 65
          +  QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFL
Sbjct: 2  SANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFL 61

Query: 66 FDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          FDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGGS
Sbjct: 62 FDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGS 94

[Close]
BLAST of CSPI06G12910 vs. TAIR10
Match: AT5G55160.2 (AT5G55160.2 small ubiquitin-like modifier 2)

HSP 1 Score: 161.4 bits (407), Expect = 2.9e-40
Identity = 85/104 (81.73%), Postives = 86/104 (82.69%), Query Frame = 1 

Query: 10  EEDKKPNDQSAHINLKVKGQ-------------DGNEVFFRIKRSTQLKKLMNAYCDRQS 69
           EEDKKP DQ AHINLKVKGQ             DGNEVFFRIKRSTQLKKLMNAYCDRQS
Sbjct: 6   EEDKKP-DQGAHINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLKKLMNAYCDRQS 65

Query: 70  VDLNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           VD NSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG  +
Sbjct: 66  VDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGAK 108

[Close]
BLAST of CSPI06G12910 vs. TAIR10
Match: AT5G55170.1 (AT5G55170.1 small ubiquitin-like modifier 3)

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-21
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 11 EDKKPNDQS--AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 70
          +D KP DQ   AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 71 RRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
           R+   +TPDEL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]
BLAST of CSPI06G12910 vs. TAIR10
Match: AT5G55856.1 (AT5G55856.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1 

Query: 12 DKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRL 71
          DKKP   S+HI +KVK QD   V+FRIKR  +L+K+M+AY D+  V+++++ FLFDG R+
Sbjct: 5  DKKPLIPSSHITVKVKNQDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRI 64

Query: 72 RAEQTPDELEMEDGDEIDAMLHQTGG 98
          +  QTP+EL +ED DEI+A   Q GG
Sbjct: 65 KLNQTPNELGLEDEDEIEAFGEQLGG 90

[Close]
BLAST of CSPI06G12910 vs. TAIR10
Match: AT5G48710.1 (AT5G48710.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-15
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 

Query: 11  EDKKPNDQSAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGR 70
           + +K      H+ LKVKGQD  +   F ++R+ +L K+M  Y   + ++ N+  FLFDG 
Sbjct: 17  QKRKVVSDPTHVTLKVKGQDEEDFRVFWVRRNAKLLKMMELYTKMRGIEWNTFRFLFDGS 76

Query: 71  RLRAEQTPDELEMEDGDEIDAMLHQTGG 98
           R+R   TPDELE +DGDEIDAML Q  G
Sbjct: 77  RIREYHTPDELERKDGDEIDAMLCQQSG 104

[Close]
BLAST of CSPI06G12910 vs. NCBI nr
Match: gi|449466075|ref|XP_004150752.1| (PREDICTED: small ubiquitin-related modifier 1 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 5.6e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 100

[Close]
BLAST of CSPI06G12910 vs. NCBI nr
Match: gi|659113027|ref|XP_008456407.1| (PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-48
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+R
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSSR 100

[Close]
BLAST of CSPI06G12910 vs. NCBI nr
Match: gi|567910657|ref|XP_006447642.1| (hypothetical protein CICLE_v10017283mg [Citrus clementina])

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-45
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTNT QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LN
Sbjct: 1  MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          SIAFLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 61 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 97

[Close]
BLAST of CSPI06G12910 vs. NCBI nr
Match: gi|470136628|ref|XP_004304088.1| (PREDICTED: small ubiquitin-related modifier 1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 185.7 bits (470), Expect = 4.1e-44
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGV +  QEEDKKPNDQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LN
Sbjct: 1   MSGVASQPQEEDKKPNDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG+ +
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAAQ 100

[Close]
BLAST of CSPI06G12910 vs. NCBI nr
Match: gi|593691938|ref|XP_007146517.1| (hypothetical protein PHAVU_006G047600g [Phaseolus vulgaris])

HSP 1 Score: 185.3 bits (469), Expect = 5.4e-44
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 

Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTN   EEDKKP++Q AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD N
Sbjct: 1  MSGVTNNNNEEDKKPSEQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS
Sbjct: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 98

The following BLAST results are available for this feature:
BLAST of CSPI06G12910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SUMO1_ARATH1.0e-4291.40Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2[more]
SUMO2_ARATH8.6e-4293.41Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1[more]
SUMO1_ORYSJ6.8e-3989.01Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1... [more]
PMT3_SCHPO1.8e-2355.79Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
SUMO3_ARATH5.4e-2055.06Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana GN=SUMO3 PE=1 SV=1[more]
BLAST of CSPI06G12910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDV8_CUCSA3.9e-49100.00Small ubiquitin-related modifier OS=Cucumis sativus GN=Csa_6G157680 PE=3 SV=1[more]
V4U4M1_9ROSI8.9e-4696.91Small ubiquitin-related modifier OS=Citrus clementina GN=CICLE_v10017283mg PE=3 ... [more]
V7BPK6_PHAVU3.8e-4492.86Small ubiquitin-related modifier OS=Phaseolus vulgaris GN=PHAVU_006G047600g PE=3... [more]
B9IAK0_POPTR6.4e-4490.00Small ubiquitin-related modifier OS=Populus trichocarpa GN=POPTR_0014s15650g PE=... [more]
A0A0A0L2Y3_CUCSA1.1e-4395.88Small ubiquitin-related modifier OS=Cucumis sativus GN=Csa_3G073930 PE=3 SV=1[more]
BLAST of CSPI06G12910 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26840.15.7e-4491.40 small ubiquitin-like modifier 1[more]
AT5G55160.22.9e-4081.73 small ubiquitin-like modifier 2[more]
AT5G55170.13.1e-2155.06 small ubiquitin-like modifier 3[more]
AT5G55856.13.4e-2052.33 Ubiquitin-like superfamily protein[more]
AT5G48710.11.5e-1545.45 Ubiquitin-like superfamily protein[more]
BLAST of CSPI06G12910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466075|ref|XP_004150752.1|5.6e-49100.00PREDICTED: small ubiquitin-related modifier 1 [Cucumis sativus][more]
gi|659113027|ref|XP_008456407.1|1.6e-4899.00PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo][more]
gi|567910657|ref|XP_006447642.1|1.3e-4596.91hypothetical protein CICLE_v10017283mg [Citrus clementina][more]
gi|470136628|ref|XP_004304088.1|4.1e-4491.00PREDICTED: small ubiquitin-related modifier 1-like [Fragaria vesca subsp. vesca][more]
gi|593691938|ref|XP_007146517.1|5.4e-4492.86hypothetical protein PHAVU_006G047600g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR022617Rad60/SUMO-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0016925 protein sumoylation
cellular_component GO:0005634 nucleus
cellular_component GO:0044424 intracellular part
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0031386 protein tag
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G12910.1CSPI06G12910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 22..93
score: 2.5
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 20..97
score: 15
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 22..92
score: 6.5
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 13..97
score: 3.6
NoneNo IPR availablePANTHERPTHR10562SMALL UBIQUITIN-RELATED MODIFIERcoord: 7..100
score: 5.2
NoneNo IPR availablePANTHERPTHR10562:SF26SUBFAMILY NOT NAMEDcoord: 7..100
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G12910Cla013517Watermelon (97103) v1cpiwmB532
CSPI06G12910Csa6G157680Cucumber (Chinese Long) v2cpicuB314
CSPI06G12910MELO3C019737Melon (DHL92) v3.5.1cpimeB437
CSPI06G12910ClCG02G018070Watermelon (Charleston Gray)cpiwcgB460
CSPI06G12910Lsi10G015710Bottle gourd (USVL1VR-Ls)cpilsiB419
CSPI06G12910Lsi11G016770Bottle gourd (USVL1VR-Ls)cpilsiB433
CSPI06G12910MELO3C031071.2Melon (DHL92) v3.6.1cpimedB482
CSPI06G12910MELO3C019737.2Melon (DHL92) v3.6.1cpimedB415
CSPI06G12910CsaV3_6G015370Cucumber (Chinese Long) v3cpicucB364
CSPI06G12910CsaV3_6G037710Cucumber (Chinese Long) v3cpicucB369
CSPI06G12910Cla97C02G043880Watermelon (97103) v2cpiwmbB453
CSPI06G12910Bhi10G000804Wax gourdcpiwgoB612
CSPI06G12910Bhi05G001811Wax gourdcpiwgoB573
CSPI06G12910Cucsa.384750Cucumber (Gy14) v1cgycpiB570
CSPI06G12910CmaCh20G002320Cucurbita maxima (Rimu)cmacpiB562
CSPI06G12910CmaCh02G000670Cucurbita maxima (Rimu)cmacpiB637
CSPI06G12910CmoCh19G010710Cucurbita moschata (Rifu)cmocpiB518
CSPI06G12910CmoCh02G000650Cucurbita moschata (Rifu)cmocpiB630
CSPI06G12910CmoCh20G002530Cucurbita moschata (Rifu)cmocpiB550
CSPI06G12910Cp4.1LG16g07520Cucurbita pepo (Zucchini)cpecpiB295
CSPI06G12910Cp4.1LG05g15320Cucurbita pepo (Zucchini)cpecpiB746
CSPI06G12910CsGy6G021820Cucumber (Gy14) v2cgybcpiB292
CSPI06G12910CsGy6G012990Cucumber (Gy14) v2cgybcpiB288
CSPI06G12910Carg13617Silver-seed gourdcarcpiB0027
CSPI06G12910Carg15714Silver-seed gourdcarcpiB0568
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI06G12910CSPI06G22590Wild cucumber (PI 183967)cpicpiB187
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G12910Cucurbita moschata (Rifu)cmocpiB127
CSPI06G12910Cucurbita moschata (Rifu)cmocpiB640
CSPI06G12910Melon (DHL92) v3.6.1cpimedB429
CSPI06G12910Silver-seed gourdcarcpiB0426
CSPI06G12910Cucurbita maxima (Rimu)cmacpiB138