Cla012994 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012994
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 22683087 .. 22684968 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGGTAATTCTCAGCCTTCATTTCTTTTTTTGGTAAAAGAAACAATTTATTGATATGAAATTAATTGTCAGCCTTCATTTCTTTACAGTCAAGAAATTAATTGTAACAAGCTATGTCATTGCTTATTTAATGTAGTTGTTCTGTCTAATAGATCTTCTACTCCCTCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGATTCAAGTATGTCTCCTAACTTATAACTCAATGTTCAATTAATAACACATGGAAAGATTATCCTTATAGTTTTCATAACACATTCTAAAATGAAACCATGCTTTTGCATTCGATATTTAATTTAGTACATAGAGATCCTAAGTCAAGAATCAGTGAGTTTGCGATGCTTTATGGGAGTTTTTGTACTTTAGAGAATGGATATGTAAGATGCTTCAAAGTCACCGGATGGCTTGGTAGTAAGGACTTAGGATGTTGGGAGATATCTTTGAAATCTAGGATAAGAATTTTTCGGCTGTAAAGTTAATAAATTAAAAATTTTTGTTCTCTTAGTTTTAGGTTTGAGGTGTATAAGAGACCTATTTGGAGATTGGCGGGGTGGGCTTGAGCATAGTGCAAGGAATGTGTCCCATACAGCATACCTGGGTTTTATATATATGATATGAATATACATATATGTACAGCTTCAAAGTGTTGTTATGGAAAAAAGTATCTACTCGCTTGAATTGTTATTGCCACTTGCCAGTATTTCAAAGCATGCAATGTACATCTATGACGAGCTTGAGTGGCAACTGTGGTGCCACATTCAACGAGGCAGACATTATGGTTGCCATTCAGTCATCTTTGTAGCATTCTTGGTGAACACTTTAAAGATTTTTTACTGGAATGCAATCGTTGTATTTTTGAGGACGAGGCCACAGATTTTGATAAGTTCTTTGATCACAGAACTGATATCGCTTTTTCTTGGTGTAAATTTACTCTCAGTTTAGTTCTCATAGTCTCGCTTTCCTTATTGCCCGATGGAAATGTTTTTTTTGTTAATTCTTTGGCACATAATTTGTCCTCTTTTGTAACTTATTCTTATCAATCAAATGAAGGAATTCTCTGTTTCTCACTAAAAAAAAATGAAAACAAAAAACACTTTGAAATTTTAGCCCGTAGTTTTTCCTCTTCTGACAGTAGTCAAGGATTTTTTTTTTTCCTTCTATGAACACATATTTCTTCTTCAACCACAAGGAAGGTGATAGGAATGCTATTGACGGTACACTAGTAATTAGTTAGGAAGTTTGTTACCCTATTTAGTTATAATAGGGTCCTGGGGAGGGTGGAGAAAGAGGAAGGCAGAGAATTGCTTAGATGGTTATAGTGTGTTTGGAATCACTTTGGAATAAGATTGTTTTTTTAAAATAAAATTGATTTTTCTATAAGCACATTCAAAAAGAAAAATAATAATTTAAAGAATGTCTAGCATAACTTATTGAGTGATTTTAGAGGATCAAAATTGGTTTTTAAAAAATGCTTAATAAATAAGTAGTTCAAAGAAATTGGATTAATTTAAAACATTTTCTGAACAAACGCTTGAGAGATGGATCATCCAAAAATGGCTTTTAAGTGATTAACTGAAAATCCTCAAAATATGTGGTAAGAAATAATAACATATTTCTAATTGATAAAACCACTTTTGAATATTAGTTGTTTCTCTTCTGTGAATAGTAGCAATTTGTAGGAGAATTCATTTTTGATCCCCTTGGCCTCTTAACTTCTTTGCAGATCAGGAGGCTCAGCCAGTTGATACTGATACCTGGCATGATCTTGCCTTAGGTAACCAATGA

mRNA sequence

ATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTCTACTCCCTCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGATTCAAATCAGGAGGCTCAGCCAGTTGATACTGATACCTGGCATGATCTTGCCTTAGGTAACCAATGA

Coding sequence (CDS)

ATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTCTACTCCCTCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGATTCAAATCAGGAGGCTCAGCCAGTTGATACTGATACCTGGCATGATCTTGCCTTAGGTAACCAATGA

Protein sequence

MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLALGNQ

Homology

[Close]

BLAST of Cla012994 vs. Swiss-Prot
Match: APC13_ARATH (Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana GN=APC13 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.9e-21
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAE+SLG+LIDI+DEEWMRDTLP DDL LPPVL V+TDDTE++NQE Q  D +TW DLAL
Sbjct: 1  MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEETNQETQQADAETWRDLAL 60

Query: 61 GNQ 64
            Q
Sbjct: 61 DTQ 63

[Close]

BLAST of Cla012994 vs. TrEMBL
Match: A0A0A0LNL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G437080 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-27
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE QPVDTDTWHDLAL
Sbjct: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218

Query: 61  GNQ 64
           GNQ
Sbjct: 219 GNQ 221

[Close]

BLAST of Cla012994 vs. TrEMBL
Match: B9H2H1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05710g PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-23
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAEL++GILIDI+DEEWMRDTLP DDL LPPV+VVRTDDTEDSNQE Q VDTD WHDLAL
Sbjct: 1  MAELNMGILIDIVDEEWMRDTLPDDDLALPPVMVVRTDDTEDSNQETQHVDTDAWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]

BLAST of Cla012994 vs. TrEMBL
Match: A9P9X2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s07210g PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-22
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAEL++GILIDI+DEEWMRDTLP DDL LPPV+VVRTDD EDSNQ+ Q VD D WHDLAL
Sbjct: 1  MAELNMGILIDIVDEEWMRDTLPDDDLALPPVMVVRTDDAEDSNQDTQHVDADAWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]

BLAST of Cla012994 vs. TrEMBL
Match: Q2HV02_MEDTR (Bonsai protein OS=Medicago truncatula GN=MTR_7g111090 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.3e-22
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILIDI+DE+WMRDTLP DDL LPP LVVRTDDTEDSNQEAQ V+ D WHDLAL
Sbjct: 1  MAELSLGILIDIVDEDWMRDTLPQDDLPLPPTLVVRTDDTEDSNQEAQQVNKDAWHDLAL 60

Query: 61 GNQ 64
          G +
Sbjct: 61 GQE 63

[Close]

BLAST of Cla012994 vs. TrEMBL
Match: V7D177_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G220400g PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.6e-22
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILIDI+DEEWMRDTLP DDL LPP LVVRTDDTEDSNQE Q V+ D WHDLAL
Sbjct: 1  MAELSLGILIDIVDEEWMRDTLPDDDLPLPPTLVVRTDDTEDSNQETQQVNADAWHDLAL 60

Query: 61 GNQ 64
          G +
Sbjct: 61 GQE 63

[Close]

BLAST of Cla012994 vs. NCBI nr
Match: gi|659118588|ref|XP_008459198.1| (PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-27
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1


Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE+QPVDTDTWHDLAL
Sbjct: 96  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQESQPVDTDTWHDLAL 155

Query: 61  GNQ 64
           GNQ
Sbjct: 156 GNQ 158

[Close]

BLAST of Cla012994 vs. NCBI nr
Match: gi|449460716|ref|XP_004148091.1| (PREDICTED: uncharacterized protein LOC101219832 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE QPVDTDTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]

BLAST of Cla012994 vs. NCBI nr
Match: gi|700208279|gb|KGN63398.1| (hypothetical protein Csa_2G437080 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE QPVDTDTWHDLAL
Sbjct: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218

Query: 61  GNQ 64
           GNQ
Sbjct: 219 GNQ 221

[Close]

BLAST of Cla012994 vs. NCBI nr
Match: gi|224079079|ref|XP_002305741.1| (hypothetical protein POPTR_0004s05710g [Populus trichocarpa])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAEL++GILIDI+DEEWMRDTLP DDL LPPV+VVRTDDTEDSNQE Q VDTD WHDLAL
Sbjct: 1  MAELNMGILIDIVDEEWMRDTLPDDDLALPPVMVVRTDDTEDSNQETQHVDTDAWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]

BLAST of Cla012994 vs. NCBI nr
Match: gi|1009145863|ref|XP_015890570.1| (PREDICTED: uncharacterized protein LOC107425144 [Ziziphus jujuba])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-23
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          M+ELSLGIL+DI+DEEWMRDTLP+DDL LPPVLVVR DDTEDSNQEAQ VD DTWHDLAL
Sbjct: 1  MSELSLGILVDIVDEEWMRDTLPNDDLPLPPVLVVRNDDTEDSNQEAQQVDGDTWHDLAL 60

Query: 61 GNQ 64
          G Q
Sbjct: 61 GTQ 63

The following BLAST results are available for this feature:

BLAST of Cla012994 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APC13_ARATH	8.9e-21	73.02	Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana GN=APC13 PE=1 SV=1	[more]

BLAST of Cla012994 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNL0_CUCSA	1.5e-27	96.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G437080 PE=4 SV=1	[more]
B9H2H1_POPTR	1.0e-23	85.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05710g PE=4 SV=1	[more]
A9P9X2_POPTR	3.3e-22	80.95	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s07210g PE=2 SV=1	[more]
Q2HV02_MEDTR	7.3e-22	82.54	Bonsai protein OS=Medicago truncatula GN=MTR_7g111090 PE=2 SV=1	[more]
V7D177_PHAVU	9.6e-22	82.54	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G220400g PE=4 SV=1	[more]

BLAST of Cla012994 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118588\|ref\|XP_008459198.1\|	1.7e-27	96.83	PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo]	[more]
gi\|449460716\|ref\|XP_004148091.1\|	2.2e-27	96.83	PREDICTED: uncharacterized protein LOC101219832 [Cucumis sativus]	[more]
gi\|700208279\|gb\|KGN63398.1\|	2.2e-27	96.83	hypothetical protein Csa_2G437080 [Cucumis sativus]	[more]
gi\|224079079\|ref\|XP_002305741.1\|	1.5e-23	85.71	hypothetical protein POPTR_0004s05710g [Populus trichocarpa]	[more]
gi\|1009145863\|ref\|XP_015890570.1\|	5.6e-23	85.71	PREDICTED: uncharacterized protein LOC107425144 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0010152	pollen maturation
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0051301	cell division
biological_process	GO:0007049	cell cycle
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0010229	inflorescence development
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0061614	pri-miRNA transcription from RNA polymerase II promoter
biological_process	GO:0009845	seed germination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0050826	response to freezing
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0048827	phyllome development
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0019915	lipid storage
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005680	anaphase-promoting complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU30003	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU36359	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012994	Cla012994.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU36359	WMU36359	transcribed_cluster
WMU30003	WMU30003	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR28672	FAMILY NOT NAMED	coord: 1..62 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012994	Cla97C09G178470	Watermelon (97103) v2	wmwmbB043
Cla012994	Csa2G437080	Cucumber (Chinese Long) v2	cuwmB102
Cla012994	MELO3C021892	Melon (DHL92) v3.5.1	mewmB083
Cla012994	ClCG09G016900	Watermelon (Charleston Gray)	wcgwmB009
Cla012994	CSPI02G27730	Wild cucumber (PI 183967)	cpiwmB107
Cla012994	Cucsa.318760	Cucumber (Gy14) v1	cgywmB580
Cla012994	CmaCh20G009230	Cucurbita maxima (Rimu)	cmawmB510
Cla012994	CmoCh20G009300	Cucurbita moschata (Rifu)	cmowmB503
Cla012994	Lsi10G002590	Bottle gourd (USVL1VR-Ls)	lsiwmB044
Cla012994	Cp4.1LG16g01780	Cucurbita pepo (Zucchini)	cpewmB274
Cla012994	CsGy2G027170	Cucumber (Gy14) v2	cgybwmB100
Cla012994	MELO3C021892.2	Melon (DHL92) v3.6.1	medwmB082
Cla012994	Carg27476	Silver-seed gourd	carwmB0542
Cla012994	CsaV3_2G036390	Cucumber (Chinese Long) v3	cucwmB114
Cla012994	Bhi10G001312	Wax gourd	wgowmB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012994	Cucurbita maxima (Rimu)	cmawmB549
Cla012994	Cucurbita moschata (Rifu)	cmowmB541
Cla012994	Melon (DHL92) v3.5.1	mewmB087
Cla012994	Cucurbita pepo (Zucchini)	cpewmB686
Cla012994	Silver-seed gourd	carwmB1054