CsaV3_2G036390 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G036390
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Anaphase-promoting complex subunit 13
Location	chr2 : 24533566 .. 24536434 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGACATATATATGCAGAACTTTAATCTATGCATCATAAACTGAAAAATTACCTATTTGAATGAATGACGAGAATAACAATTAACAACGATACTTGTATAGTTTGTAGAAGAAATTACATAACCTTTTCTTTCAGTTCCTTTGCCACTCCATATTTTCGGTCTCCTCTGCTTTACTCACTCACTCAAACTCTCAGCATTTCAAACAAGAACTTGGGCTTTAAAAGCCCAAAGTTGGCCTACTTTAGAAATGGATGGTACTGCGTGTGCCTAAGGCAGAAGACACCGTCCCCCGTCCTCAACTTCCCGCCTCAATTGAACCTTCATCCGTCTTTGTCGTCCCTTCACGCAAGATTTCCACGCTGCCATTCCTCTTCATCAGTCACCCACTACTCGCTCACGACTCATCGACATTCCAGATCGCTCAGGCCACTGGTTGGTGATTTGTCTCAGATCCGGCTGCATTCGGTCTCCGCCCTTCGATCCTTGACTCCAACGTTGGTAAGCATCGCTTTCCCCTCATATTTAATTTGTTTCATGACCTTCGTAACCCAACATGAGACACTTCCTCTAGATTTCCCCCATTTCGTTCTTCAAAACTGAAGAAATATTTGAATACCCATAATCTTGAAATCACAAAACTTCACAAATAAATGGTAATAATAGAAGCTGGAAGGTTGTCTGCTCCTTCAATCTTCCTTGCTTGCCAATTCACTATCTTCTCCTCAACTTCATTATATCAAACGTTCCCTTTCAACAAAATTAAACTATTAGAAGATTAAGCATGCGGAGGATTCTCCAGCTGAACATAAATTTCCACCCTCCATTCTACTTCCAAATTTTCATAATACGCTCCGTCTTGTTCCAATTTGGACGTATTTGGAAAATTATTTTTGGAATTGATCGACATTTAGTAAATTTTTGGAGCTTTTGTTAATAACTTATGAACTTATCTATCTGGAATTTCAGATATTGGGTTTTAGAATCTACCTTAATAAGAAAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGGTAATTCTCAATCTTCATTTCTCTACAATCAAGAAATTAATTGTAACAAGCTATATGGCTTATTTAATCTAGTTTTTCTATCATTATCGTAGATCTTTTACTCCCTCCCGTGCTGGTTGTTCGGGCTGATGACACCGAGGACTCAAGTATGTCTCTAACTTCTAACTCAATGTTCGGTTAATAACACATGGAAAGATTATTCCTTTAATTTTGGTAACACATTCTAACCTGAAGCATGTTTTTGCACTTGATATTAAATTTGGTACATGGGAGTTCCTAAGTCAAGAATCAATGAGTCTGCAATGCTTTCATAGTGTTTTCGTAACTTCTGAAAATGGAAAGCAGGATGCTACAAATCTTGTTTTCTATTTCTTTTTATATTCGCGAGTTTCTAGGCCAATTTACGCCTATCGGCTATCGCAACAAATCTCACTTGTAGGATATAAAATCCTATGTAGGCTACAATCCATTTCTCTTAACCCTTTATCAAACTCAATACCCTTTATTACCATCGGCTCAACCCATGAAGATGCTTCAAAGTTAAATGTAATACTTGAGAGCGAAATGGTTGCAAAAAGTTTGTATCCTAGATTTTTCGAAGGCTCATTAAGCTAGCACTAAGAGACAACAAAAGCTTTTAATTTAATGATTTTACAACCGAAAAATTTATGTCCTAGATTTTGAAGGTATCTCCCAACATCAAAAGTGCTTACTACCACCCCTACAATCCCAATGCCCTTCAAGGTCTTAAATTCTTGTTTTACACCTGAAGGCTCAAGCTCAAGACAGCCGTTCATTCCCCTCATTATCACCTTTTGAGTTTTGGCCTCTGAATATATTTTCTTCTACTTTTTGTCTTGTGGCTTAATGGTTATCGTGCAGTTGTGAAAATTGTGAATAGGAAGTAATAAACCGATCTTTAATCACTCTGTTAGAAGCACTAAAGAGCTTAGGATGGTTATTTTTGTCTCTACTTCTTACCGTCTCTAGTCTAAGTTTTTGTTGTAACTGTAATTATTGCTAAGTATTGCTTGTGTCAAGTGAGAAACCTTCACTGTAATTCTAAGCTTGTCTAGGTACGTCTCTTAAAAATGAAAATATCCTTTTGGACTTCCTAATTCACCACTTTCCTGATACCTCTTTGTTTTATTTCTTCTTCTTTCTGTCATCTATGATGTTGACACCATAAAGTGCATCTTTCACTTAAAAAACACCATTCAATACTGATAATATGAAAATCAATTAGTTTTTTCTCTCTATTTTTGGCTTGCCAATTGTAGCAATTTGCAGGAGAATTCATTTTTTGATCCCCTTTTTCTCTTAACTTCTTTGCAGATCAGGAGACTCAGCCAGTTGATACTGATACTTGGCATGATCTTGCCTTAGGTAACCAATGAACCGCCTTCTCCTAACTAAGGGTTGTCTGTTTTCAAGAAACTTGCTTCGAGTTATAAATTTTATTATCAAATTCTCTTGCGGTATTTGTATCGTAGATTGTCATATTTCACTAAAATCCATGTTGTAGAGTTAGGTAGAAAGTGTTTGTTTGTGGTAAAAGAAATTATGTACATGTTGGTGGCAGTCAGTTAAGACTATTGATGGATTTGCTGTTCTCTTTTGTAATTTGTTGTGTGAAGACAGATTGAAATGTTATTTCTTATTATGAGATCTTTGTTCAATTCCACTTGGAAAAAACTTTAGAGTTGCTTCTAAACTTAATGGTTTTAAAAGGAGTACTACCATCAGATTGTTTTGGTCCTTCGGTAAAGAAGATTTTAATTATTCC

mRNA sequence

ATGACGAGAATAACAATTAACAACGATACTTGTATAGTTTGTAGAAGAAATTACATAACCTTTTCTTTCAGTTCCTTTGCCACTCCATATTTTCGGTCTCCTCTGCTTTACTCACTCACTCAAACTCTCAGCATTTCAAACAAGAACTTGGGCTTTAAAAGCCCAAAGTTGGCCTACTTTAGAAATGGATGGTACTGCGTGTGCCTAAGGCAGAAGACACCGTCCCCCGTCCTCAACTTCCCGCCTCAATTGAACCTTCATCCGTCTTTGTCGTCCCTTCACGCAAGATTTCCACGCTGCCATTCCTCTTCATCAGTCACCCACTACTCGCTCACGACTCATCGACATTCCAGATCGCTCAGGCCACTGGTTGGTGATTTGTCTCAGATCCGGCTGCATTCGGTCTCCGCCCTTCGATCCTTGACTCCAACGTTGATATTGGGTTTTAGAATCTACCTTAATAAGAAAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTTTACTCCCTCCCGTGCTGGTTGTTCGGGCTGATGACACCGAGGACTCAAATCAGGAGACTCAGCCAGTTGATACTGATACTTGGCATGATCTTGCCTTAGGTAACCAATGA

Coding sequence (CDS)

ATGACGAGAATAACAATTAACAACGATACTTGTATAGTTTGTAGAAGAAATTACATAACCTTTTCTTTCAGTTCCTTTGCCACTCCATATTTTCGGTCTCCTCTGCTTTACTCACTCACTCAAACTCTCAGCATTTCAAACAAGAACTTGGGCTTTAAAAGCCCAAAGTTGGCCTACTTTAGAAATGGATGGTACTGCGTGTGCCTAAGGCAGAAGACACCGTCCCCCGTCCTCAACTTCCCGCCTCAATTGAACCTTCATCCGTCTTTGTCGTCCCTTCACGCAAGATTTCCACGCTGCCATTCCTCTTCATCAGTCACCCACTACTCGCTCACGACTCATCGACATTCCAGATCGCTCAGGCCACTGGTTGGTGATTTGTCTCAGATCCGGCTGCATTCGGTCTCCGCCCTTCGATCCTTGACTCCAACGTTGATATTGGGTTTTAGAATCTACCTTAATAAGAAAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTTTACTCCCTCCCGTGCTGGTTGTTCGGGCTGATGACACCGAGGACTCAAATCAGGAGACTCAGCCAGTTGATACTGATACTTGGCATGATCTTGCCTTAGGTAACCAATGA

Protein sequence

MTRITINNDTCIVCRRNYITFSFSSFATPYFRSPLLYSLTQTLSISNKNLGFKSPKLAYFRNGWYCVCLRQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSLRPLVGDLSQIRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLALGNQ

Homology

[Close]

BLAST of CsaV3_2G036390 vs. NCBI nr
Match: KGN63398.1 (hypothetical protein Csa_2G437080 [Cucumis sativus])

HSP 1 Score: 449.9 bits (1156), Expect = 5.0e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MTRITINNDTCIVCRRNYITFSFSSFATPYFRSPLLYSLTQTLSISNKNLGFKSPKLAYF 60
           MTRITINNDTCIVCRRNYITFSFSSFATPYFRSPLLYSLTQTLSISNKNLGFKSPKLAYF
Sbjct: 1   MTRITINNDTCIVCRRNYITFSFSSFATPYFRSPLLYSLTQTLSISNKNLGFKSPKLAYF 60

Query: 61  RNGWYCVCLRQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSL 120
           RNGWYCVCLRQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSL
Sbjct: 61  RNGWYCVCLRQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSL 120

Query: 121 RPLVGDLSQIRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTL 180
           RPLVGDLSQIRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTL
Sbjct: 121 RPLVGDLSQIRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTL 180

Query: 181 PHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLALGNQ 222
           PHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLALGNQ
Sbjct: 181 PHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLALGNQ 221

[Close]

BLAST of CsaV3_2G036390 vs. NCBI nr
Match: XP_008459198.1 (PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 70  RQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSLRPLVGDLSQ 129
           +++  +PVLN  PQL LHPSLSSL+ARFPR HSSSSV HY LTTH HSRSLR LVGDLSQ
Sbjct: 7   KEEDTAPVLNSQPQLKLHPSLSSLNARFPRRHSSSSVAHYLLTTHWHSRSLRLLVGDLSQ 66

Query: 130 IRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPP 189
           IRLH V+ALRSLTPT ILGFR YLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPP
Sbjct: 67  IRLHPVAALRSLTPTSILGFRTYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPP 126

Query: 190 VLVVRADDTEDSNQETQPVDTDTWHDLALGNQ 222
           VLVVRADDTEDSNQE+QPVDTDTWHDLALGNQ
Sbjct: 127 VLVVRADDTEDSNQESQPVDTDTWHDLALGNQ 158

[Close]

BLAST of CsaV3_2G036390 vs. NCBI nr
Match: XP_004148091.1 (PREDICTED: uncharacterized protein LOC101219832 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL
Sbjct: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 60

Query: 219 GNQ 222
           GNQ
Sbjct: 61  GNQ 63

[Close]

BLAST of CsaV3_2G036390 vs. NCBI nr
Match: XP_022986653.1 (anaphase-promoting complex subunit 13 [Cucurbita maxima] >XP_023512104.1 anaphase-promoting complex subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE QPVD DTWHDLAL
Sbjct: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 219 GNQ 222
           GNQ
Sbjct: 61  GNQ 63

[Close]

BLAST of CsaV3_2G036390 vs. NCBI nr
Match: XP_022943415.1 (anaphase-promoting complex subunit 13 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 59/63 (93.65%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218
           MAELSLGILIDILDEEWMRDTL HDDLLLPPVLVVR DDTEDSNQE QPVD DTWHDLAL
Sbjct: 1   MAELSLGILIDILDEEWMRDTLRHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 219 GNQ 222
           GNQ
Sbjct: 61  GNQ 63

[Close]

BLAST of CsaV3_2G036390 vs. TAIR10
Match: AT1G73177.1 (bonsai)

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-21
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218
           MAE+SLG+LIDI+DEEWMRDTLP DDL LPPVL V+ DDTE++NQETQ  D +TW DLAL
Sbjct: 1   MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEETNQETQQADAETWRDLAL 60

Query: 219 GNQ 222
             Q
Sbjct: 61  DTQ 63

[Close]

BLAST of CsaV3_2G036390 vs. Swiss-Prot
Match: sp|Q8L981|APC13_ARATH (Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana OX=3702 GN=APC13 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.4e-20
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218
           MAE+SLG+LIDI+DEEWMRDTLP DDL LPPVL V+ DDTE++NQETQ  D +TW DLAL
Sbjct: 1   MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEETNQETQQADAETWRDLAL 60

Query: 219 GNQ 222
             Q
Sbjct: 61  DTQ 63

[Close]

BLAST of CsaV3_2G036390 vs. TrEMBL
Match: tr|A0A0A0LNL0|A0A0A0LNL0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437080 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 3.3e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MTRITINNDTCIVCRRNYITFSFSSFATPYFRSPLLYSLTQTLSISNKNLGFKSPKLAYF 60
           MTRITINNDTCIVCRRNYITFSFSSFATPYFRSPLLYSLTQTLSISNKNLGFKSPKLAYF
Sbjct: 1   MTRITINNDTCIVCRRNYITFSFSSFATPYFRSPLLYSLTQTLSISNKNLGFKSPKLAYF 60

Query: 61  RNGWYCVCLRQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSL 120
           RNGWYCVCLRQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSL
Sbjct: 61  RNGWYCVCLRQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSL 120

Query: 121 RPLVGDLSQIRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTL 180
           RPLVGDLSQIRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTL
Sbjct: 121 RPLVGDLSQIRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTL 180

Query: 181 PHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLALGNQ 222
           PHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLALGNQ
Sbjct: 181 PHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLALGNQ 221

[Close]

BLAST of CsaV3_2G036390 vs. TrEMBL
Match: tr|A0A1S3CA59|A0A1S3CA59_CUCME (uncharacterized protein LOC103498390 OS=Cucumis melo OX=3656 GN=LOC103498390 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.9e-66
Identity = 132/152 (86.84%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 70  RQKTPSPVLNFPPQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSLRPLVGDLSQ 129
           +++  +PVLN  PQL LHPSLSSL+ARFPR HSSSSV HY LTTH HSRSLR LVGDLSQ
Sbjct: 7   KEEDTAPVLNSQPQLKLHPSLSSLNARFPRRHSSSSVAHYLLTTHWHSRSLRLLVGDLSQ 66

Query: 130 IRLHSVSALRSLTPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPP 189
           IRLH V+ALRSLTPT ILGFR YLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPP
Sbjct: 67  IRLHPVAALRSLTPTSILGFRTYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPP 126

Query: 190 VLVVRADDTEDSNQETQPVDTDTWHDLALGNQ 222
           VLVVRADDTEDSNQE+QPVDTDTWHDLALGNQ
Sbjct: 127 VLVVRADDTEDSNQESQPVDTDTWHDLALGNQ 158

[Close]

BLAST of CsaV3_2G036390 vs. TrEMBL
Match: tr|B9H2H1|B9H2H1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G058400v3 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218
           MAEL++GILIDI+DEEWMRDTLP DDL LPPV+VVR DDTEDSNQETQ VDTD WHDLAL
Sbjct: 1   MAELNMGILIDIVDEEWMRDTLPDDDLALPPVMVVRTDDTEDSNQETQHVDTDAWHDLAL 60

Query: 219 GNQ 222
           GNQ
Sbjct: 61  GNQ 63

[Close]

BLAST of CsaV3_2G036390 vs. TrEMBL
Match: tr|A0A2C9U647|A0A2C9U647_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G057300 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218
           MAELSLG+LID++DEEWMRDTLP DDL LPPVLVVR DD EDSNQETQ V+ DTWHDLAL
Sbjct: 1   MAELSLGVLIDVVDEEWMRDTLPDDDLPLPPVLVVRTDDGEDSNQETQQVNGDTWHDLAL 60

Query: 219 GNQ 222
           GNQ
Sbjct: 61  GNQ 63

[Close]

BLAST of CsaV3_2G036390 vs. TrEMBL
Match: tr|A0A1U7ZIM0|A0A1U7ZIM0_NELNU (anaphase-promoting complex subunit 13 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104593323 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218
           MAELSLG+LIDI+DEEWMRDTLP DD+LLPPV+V R DDTED NQETQP + DTW DLAL
Sbjct: 1   MAELSLGVLIDIVDEEWMRDTLPEDDVLLPPVMVARTDDTEDPNQETQPANGDTWRDLAL 60

Query: 219 GNQ 222
           GNQ
Sbjct: 61  GNQ 63

The following BLAST results are available for this feature:

BLAST of CsaV3_2G036390 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63398.1	5.0e-123	100.00	hypothetical protein Csa_2G437080 [Cucumis sativus]	[more]
XP_008459198.1	4.3e-66	86.84	PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo]	[more]
XP_004148091.1	2.3e-27	100.00	PREDICTED: uncharacterized protein LOC101219832 [Cucumis sativus]	[more]
XP_022986653.1	9.7e-26	95.24	anaphase-promoting complex subunit 13 [Cucurbita maxima] >XP_023512104.1 anaphas...	[more]
XP_022943415.1	1.1e-24	93.65	anaphase-promoting complex subunit 13 [Cucurbita moschata]	[more]

BLAST of CsaV3_2G036390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73177.1	3.0e-21	73.02	bonsai	[more]

BLAST of CsaV3_2G036390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L981\|APC13_ARATH	5.4e-20	73.02	Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana OX=3702 GN=APC13 P...	[more]

BLAST of CsaV3_2G036390 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNL0\|A0A0A0LNL0_CUCSA	3.3e-123	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G437080 PE=4 SV=1	[more]
tr\|A0A1S3CA59\|A0A1S3CA59_CUCME	2.9e-66	86.84	uncharacterized protein LOC103498390 OS=Cucumis melo OX=3656 GN=LOC103498390 PE=...	[more]
tr\|B9H2H1\|B9H2H1_POPTR	1.1e-22	85.71	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G058400v3 PE=...	[more]
tr\|A0A2C9U647\|A0A2C9U647_MANES	1.6e-21	84.13	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G057300 PE=4 SV=...	[more]
tr\|A0A1U7ZIM0\|A0A1U7ZIM0_NELNU	2.8e-21	80.95	anaphase-promoting complex subunit 13 isoform X2 OS=Nelumbo nucifera OX=4432 GN=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0009845	seed germination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0050826	response to freezing
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0048827	phyllome development
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0019915	lipid storage
biological_process	GO:0010229	inflorescence development
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005680	anaphase-promoting complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G036390.1	CsaV3_2G036390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR28672	FAMILY NOT NAMED	coord: 163..220

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G036390	CSPI02G27730	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G036390	Cucsa.318760	Cucumber (Gy14) v1	cgycucB495
CsaV3_2G036390	CmaCh20G009230	Cucurbita maxima (Rimu)	cmacucB0653
CsaV3_2G036390	CmoCh20G009300	Cucurbita moschata (Rifu)	cmocucB0639
CsaV3_2G036390	Cp4.1LG16g01780	Cucurbita pepo (Zucchini)	cpecucB0337
CsaV3_2G036390	CsGy2G027170	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G036390	Carg27476	Silver-seed gourd	carcucB0581
CsaV3_2G036390	Cla012994	Watermelon (97103) v1	cucwmB114
CsaV3_2G036390	MELO3C021892	Melon (DHL92) v3.5.1	cucmeB099
CsaV3_2G036390	ClCG09G016900	Watermelon (Charleston Gray)	cucwcgB106
CsaV3_2G036390	Lsi10G002590	Bottle gourd (USVL1VR-Ls)	cuclsiB105
CsaV3_2G036390	MELO3C021892.2	Melon (DHL92) v3.6.1	cucmedB091
CsaV3_2G036390	Cla97C09G178470	Watermelon (97103) v2	cucwmbB168
CsaV3_2G036390	Bhi10G001312	Wax gourd	cucwgoB180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G036390	Silver-seed gourd	carcucB1100
CsaV3_2G036390	Cucurbita maxima (Rimu)	cmacucB0703
CsaV3_2G036390	Cucurbita moschata (Rifu)	cmocucB0689
CsaV3_2G036390	Cucurbita pepo (Zucchini)	cpecucB0881