WMU30003 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU30003
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAnaphase-promoting complex subunit 13
LocationChr9 : 22682717 .. 22685292 (+)
Sequence length890
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

TAGAGTGCACACTCTGAGAGCGAATTTGCTTTTTTCTATTACTTAGTCTGCCTTTGTTCGTGTTGAAATGCTGTCATATACACATCCCAGATGGTGTTTTTACCTGCCACTTCGCCTCAAGTATTACATTTGAGTTTTATTTTTTTATTTACTTTGCATATATGATAGCTTTTGTATTTCTTTGTCTAGACTAAATTTGTTGGCTATTGCACTTCTTTATCAAGAATTTCTTCAACTGAATCTCTATTGTATATTTGATATCCTCTCCTAGTGTACGTTAGATTGATTTATACGTTTTGCCTTTATTAATCACATATCTATCTGAAATTTCAGATATTGGGTTTTAGAATCTCCCTTAACAAGAGAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTCTACTCCCTCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGATTCAAAATCAGGAGGCTCAGCCAGTTGATACTGATACCTGGCATGATCTTGCCTTAGGTAACCAATGAACCTTCTCCTAACTAAGGATGGTCTGTTTTCAAGAGATTTGCTTCAAGTTAGAAATTTTATTATCATATTCTCTTGCTGTATTCGCATTGTAGATTTTTCGGATTTTCATTTAATCCATGTTATAGATGTTAAAATATTGATGTAGAAAGTGTTTGTTTGTGGTAAAAGAAACAATGTACATGTTGGTGGCAGTCGGTTAAATACTTTAGATGGATTTGCTGGTCTCTTTTGTAATTTGTTGTGTGGGGACAGATTGAAATGCTGTTTATTATATGAGATCTCTGTCCAATTCCATTGGGAAAAGACTTTAGAGTTGCTTCCAAA
Homology
[Close]
BLAST of WMU30003 vs. TrEMBL
Match: A0A0A0LNL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G437080 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 334 ILGFRISLNKRTPMAELSLGILIDILDEEWM 393
           ILGFRI LNK+TPMAELSLGILIDILDEEWM
Sbjct: 146 ILGFRIYLNKKTPMAELSLGILIDILDEEWM 176

Query: 394  427
           
Sbjct: 206  176

[Close]
BLAST of WMU30003 vs. TrEMBL
Match: A0A0A0LNL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G437080 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 8.0e-02
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 2 

Query: 503 NQEAQPVDTDTWHDLALGNQ 562
           NQE QPVDTDTWHDLALGNQ
Sbjct: 202 NQETQPVDTDTWHDLALGNQ 221

[Close]
BLAST of WMU30003 vs. NCBI nr
Match: gi|700208279|gb|KGN63398.1| (hypothetical protein Csa_2G437080 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 334 ILGFRISLNKRTPMAELSLGILIDILDEEWM 393
           ILGFRI LNK+TPMAELSLGILIDILDEEWM
Sbjct: 146 ILGFRIYLNKKTPMAELSLGILIDILDEEWM 176

Query: 394  427
           
Sbjct: 206  176

The following BLAST results are available for this feature:
BLAST of WMU30003 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNL0_CUCSA3.1e-0693.55Uncharacterized protein OS=Cucumis sativus GN=Csa_2G437080 PE=4 SV=1[more]
A0A0A0LNL0_CUCSA8.0e-0295.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G437080 PE=4 SV=1[more]
BLAST of WMU30003 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208279|gb|KGN63398.1|4.5e-0693.55hypothetical protein Csa_2G437080 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR008401Apc13p
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla012994Cla012994gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0134539S1_0134539EST
S2_0117827S2_0117827EST
S2_0132892S2_0132892EST
S3_0030003S3_0030003EST
S3_0177721S3_0177721EST


InterPro
Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008401Apc13pPFAMPF05839Apc13pcoord: 10..42
score: 6.
NoneNo IPR availablePANTHERPTHR28672FAMILY NOT NAMEDcoord: 1..43
score: 5.4
NoneNo IPR availablePANTHERPTHR28672:SF1ANAPHASE-PROMOTING COMPLEX SUBUNIT 13coord: 1..43
score: 5.4