Cla012931 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012931
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Partner of Y14 and mago (AHRD V1 -- WIBG_DANRE); contains Interpro domain(s) IPR015362 Exon junction complex, Pym
Location	Chr9 : 21224884 .. 21230045 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGCAGTGATGGAGGAGATCTGCTGAAGCAAATGACAGAGCTGAGCAAAACCCTAAAAGAAGGAGAAAGGATTCTAGCGCCAACGAGGCGACCTGATGGTACTCTTCGAAAACCCATTCGGATTAGGGCTGGCTATGTTCCACAGGAAGAAGTCGCCATTTACCAGTCCAAAGGGGCTCTGGTATGTATGCCTCATGTGTATTATATCTTATTTCCATCTCTTTTTCCTGGACTTTGTTGTGTTTCTTTCTGCTTTTCCTGTTCTTTTGTATTGAGGTATAGTTTGCTTGCCCCTTTATATGTTGTTCGTTAGTGTCGCTTGTGAAATGAAAACTCATACTGGGAAAGTAAAATCGTCCTTTGAGCTGCTGCTGTGTTGATGTGACATGGCTACTATCTAAATCACTATATTTTCCTTCAGTGTGTTGTAAAGGACGAAGCAGAGTGAAATACTGTAGCCCACGATATTAAGTGATCGTTTCATTTGATGAAGCACACAATAGAAACAAAAATTATATGTACATGATGGAATAGTCCAGTGAAAACAATGGGATAATGGAAGTGAAAGGCCTTTTTTTTAAGAAAATGTCACCTCACACAGGATTGGAGGATTTGAAACTATGATCTCTTAAAGAAAGTAGAGATTGACTTAAATGTTGAGCTATTGCTGGTACTGGTGTAATAAGTGCCTTTGATTAAGGACCTTTACTTCAAAAAAAAAAAAAGAATTTGATCAAGGATATAAGCATTTTTATACAATAAATTTCTTATATATTTAATGGAAAGGAAATATAATGATTGTGAATGCCTCTTGTTGATTCAATATTACTCACTTCTACAATCACATCTCTTGAGCTGCCTCTTGTTGATCAGGCACCCTCGATAGGAGGCCTATACATCATCCAGGACTCATTGAAATCCTTGCATCATCCACAATCGACATACAAACAATGTGTTGAAACGGGGCTAAGCACCCTCATTGGGCTTAGTTCCTAGGTTGCTCTTTAAATCATCGATTTTCTTTGCTTAAATTTAATCTTGCGGTGTGCTCTTTGTTGGGCCTTTGGGGGGAGAGGAACAATACAACCATCAAGAGGAGTTGAGAGGGACTCTAACAACATATGGTCCCTCATTACATTCATTGTTTCTCTTGGGTGTCATGTCATTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTACTTGTTAGGTCTCAGTCGTCATGATTAGAGCCCTTTTCTCTAGTTGGGCTACCTTTTGTGGGTTTATTAATTTTTTTTGGATGCTCTTGTATTTTTTTCTCCTCAATGAAAGTTGGTTTTCTCATTAAGAAGGGTGCATTCTAGGCAACCAAACCAACATCTTTATGGGCCAAAAATTTTTCTCCTGTAAAATGAAGATTAGCTTATACAATTCTAATCATAGCTTGCTTGAGTGAGGAAATAAAAGAAAGAATTTATTACATGTTCTAGAAAATTGATGATTTGAGTGTAACACATTGACTTCATTCTATTATTTTTCTGCTAGAAGTTTAGTTCCTATATTAGTGTACCCTAGAAGTTCCTATATTAGTGTACCCTAGAAGTCATCTTTGTGGCATTCATGGGGATTTATTTATTTCTGTGGGATACAGTGGAAAAAGGAGATGTCGTCCCATGATGGACCTCCTGGTTATGATCCTCCAACAGATGTAAAATCAAAGACGAAGTCAGCTAAGCGGAATGAGAGAAAGAAAGAGAAGCGACTGCAGGTTTGTTTTCCCCTTTGTTGGGATGGTTAGGTTATGTTTCTGATGGCAGCTGTAATGTTGTGAGAATTTATTTGAAAGAGCTTAATTGGAGTAAATTTTGGTTTCTTTTCCTGGGTAATACGGTCACTGATATGATGCCTGTCATCCAAACAAATTTATTTGTGATCCCTAAATGGTGAGGAAAATAACTCAAATCTATAGTGCCAGTTTTATGCTTATTTTAATTGTCCTGAGGGCAGAAAAGGGTTTTCATCTTTACTTTATTTTCTTTTATCCCATCCAATGAAGTATGAGTCTGGTAGATGATGCTTTCAACTTTAACAAAAGATTTAGCTTGTAAGTTTGAGCCAGGTCTTTTTGCCTATAACTTACACTAATCTAACATTAACTGATTTTATCTCTTGCCGACTCTTAGGATCTCAGGTGTGTGTCATTAAATAGTCAGAAGGTGAAACTCATTCAAATGGCATATGGCTGCGATGATTAGATTCAAGTAAGCTGTGGCAATTTCTAGGAAGAGTTTCTTTTCAGAAATTCTTAGTTGAGTTGTCCCATATAGTCTAAAAGTTCAACAATTTAATTTTAGACCTACATTCTAATTTGTGCTAGTTTTAAACCAGTAGTCATAGTGGGCTTAGCTCAATGGTAATTGACATGACCTTCTCTCGAAGTCAAAAGTTCATCTCCTATCCTCACAATTGTTATATTAAAAAGACAGTTTTCACTGGGTTTTCTAAGTTTTCCTGTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAGAACCATAGGTTGAAGGTTGGCATTAGTATCCTTTCTGTTATTCCCGTGTAGTTATCATACTACAAAACCAGTAATTATGCGGTGTTATTCTTTTAGGACAAAATATAGGTAAATATATAAGAAACTAAACTTTATCTGTTTCTTATCTATTTTCAACCATAGTTGTGAATATATTCATCCACTATCCCTTGGGGAATAAGGTCACCCTTATCTGAATCTGCATGCTTTTCTGTCAGAATAGTTGGTGTAGCTGGTGTAGCCTAAGTGACTAAAGGAGAGTTCTCTCCAAGAAGTCTCTCAAATCTCTATTATGAATCAAAATGGTAATAAATACATAAGAGCAATTCTCTATAATAGAGAATTGGTAAAAAAAAGGTATTAAAAATGCTAAAAAGACACTGAAAGTCTAAAAGGAATTAACCAAGGGGAATATCTATTAACCACTAATTCTACTACATCAATAATTAGAAAGATCTTTTATATGCATCTTTGCATTTAACCATATGCAACTTAACTTTGTTATTTTCAGAAAGGCATCTTATAATAGAAAATTTAATGGGTTGACATGGTTTTTTTATGTTTATTTTTGTATTGGTTTGAACTTGACCATGTTTAGAGTTTACATATAACCGTTTATATATTTTCTAACAAACAGCTGTGTCTTTTCTTCACTCTCCTTTTTCTTCAGGCGGCTCATGAAAAGGATAAAGTCTTGGAAGAAGTGGTTGTTGGAGAGATCACTGAAGCAAAGGAATCATATGTAGATAATAGGTCGGAGACGAAACCTGTCCAGTCATTAAGTTCCCAGATGAACGAACTTGCTGTTTCTACAAATCCGAAAACTGAAAGCGCTTCTTCTGAGCCAATTGATGATCCACAGTTTCCTTCCAATGACCTCGATAAGAGAATCAGAGCACTTAAAAAGAAGGTGAAGAGACAAATTTGCGTTGGTAAAATATTACAAATCATCTTTGCTTCAAAGTCTCATGAAAATTTGTCAATCCATTGCATGCAAAATATATGATTTATTTGAATTATATTCGAAGTTTAAATATCTTGATTTCCTTATAAAGTGTGGTGTACTTAGGTTTAATAGTATGTATCCAAACAATAGTTTTAATCACTCTTCTCTAAAAAACAATAGTTTTAATCACAATACCAATTCTAGAACTAAAGGGAAAACCATTGGATACTTGTTGTATCATACCCTTTGAACAACTTTTTGTCTCATGGGTTCTCCTTGGTGATCTTGCATAATGGCCAGAGTAGATGTACCTAATCTAGTTAGTTCAGTTATGATATTAAAATTTCTCTCTTCTGCTCTTGCTTTCTAATCTGTCCTTTTCGCCCATCTGTCCCAATGAAAAACTACTGGCTGGTATTTTTCCTCTTTTTGCACCTCGTTCTACATGGTTCTTAGTGATATCTTGTAGCCTTCTCATAACAATTCTTGCATCCTTTTATAACAGCATACCTTAACTCTGGTATACCACTGGAATTTTCTGTTCATCTCCCTGAAATCCATCGCATTCGCTCCAGTATAAATCCTATTCATGCTTCAACCTCAAACAATAGGTTCGCTGTCTACTTTCCTCTTTCAATTCCCAGCTTCAAGGTCTTGTTACCAAAGTTGGACCCAAAAAATTGAAGAGGTGAGGTGGAAACACAAGTCCGTTACGAATGATTGGGTTTCCAAAATCCAGAAAGTTTGAGAAGTCTTACAGTTCTCCTCCCTTCCACTCTAGATTCTCGTACCATCTCTCATCTCTCCCTAGCTGTATTAGCTCTAGTATTACAGAGAAACTAGTCTTAGTATGGGCTAGAGCCCATACTATCTTTGTTCCTAACACTAGTACAGTATGTAGATAACAGCCTAACTACTTATGGCCCAAGTATGTTAGAATTGACAAAGCTCCGATTCCTTTAAAAGAAAAGTGCTTCCTCTAAAAGCACATTATGTCAGAACTGACAGTTACTTTTTTATGTAATAAAAAACCATGAAAAATCTGAAAAGTTCTTTTAGACCTTAAGGATGAGTGCATTCCAACATCATCACAGAGCCAGATGGATCTTCCTCCCAGTCCCAGCATAGGTAGGAAGACATCTAGTGGTGTAAGTTTCGAAAGCCTATAATGTTCTGTCTTAATCACTCTTCATAAATTGAGTTATCTGGCAGTGAGGAGTATACTTGATGCAAGTATGACTTGTTCAAGAAATTCATTTGTTCTTGCAATAGTAGTATTCAGTGCCAAAACTTATATTTTTTGTTTGAGAGATCAAATATACCAATAGCGATCTAAGCTAGCATCTTCCTACCCAACTGATTATGCGAACATCTTTTAATGAATTATTGGTTGCTTTGTCGACAGCTGAAGACTTGAGTTTTATCTTAAACATCTGCAAGTTTTGTTTAGTCTGTCTATGCATTAAAACATCTTTGATAATTGTTTTCTTGTTTGGATTTGCAGATCCGAATTGCAGAAGCTCAGTTGCAAAAAACACCACTGCAAGATATGAAGCCAGAGCAGTCGAACAAGTTATCGAAACTTGAAACTTGGCGCTCCGAACTAACGCTTCTAGAAGAACAAAGGCTAAAACTAAATTGCGCATCATGA

mRNA sequence

ATGGGGAGCAGTGATGGAGGAGATCTGCTGAAGCAAATGACAGAGCTGAGCAAAACCCTAAAAGAAGGAGAAAGGATTCTAGCGCCAACGAGGCGACCTGATGGTACTCTTCGAAAACCCATTCGGATTAGGGCTGGCTATGTTCCACAGGAAGAAGTCGCCATTTACCAGTCCAAAGGGGCTCTGTGGAAAAAGGAGATGTCGTCCCATGATGGACCTCCTGGTTATGATCCTCCAACAGATGTAAAATCAAAGACGAAGTCAGCTAAGCGGAATGAGAGAAAGAAAGAGAAGCGACTGCAGATCCGAATTGCAGAAGCTCAGTTGCAAAAAACACCACTGCAAGATATGAAGCCAGAGCAGTCGAACAAGTTATCGAAACTTGAAACTTGGCGCTCCGAACTAACGCTTCTAGAAGAACAAAGGCTAAAACTAAATTGCGCATCATGA

Coding sequence (CDS)

ATGGGGAGCAGTGATGGAGGAGATCTGCTGAAGCAAATGACAGAGCTGAGCAAAACCCTAAAAGAAGGAGAAAGGATTCTAGCGCCAACGAGGCGACCTGATGGTACTCTTCGAAAACCCATTCGGATTAGGGCTGGCTATGTTCCACAGGAAGAAGTCGCCATTTACCAGTCCAAAGGGGCTCTGTGGAAAAAGGAGATGTCGTCCCATGATGGACCTCCTGGTTATGATCCTCCAACAGATGTAAAATCAAAGACGAAGTCAGCTAAGCGGAATGAGAGAAAGAAAGAGAAGCGACTGCAGATCCGAATTGCAGAAGCTCAGTTGCAAAAAACACCACTGCAAGATATGAAGCCAGAGCAGTCGAACAAGTTATCGAAACTTGAAACTTGGCGCTCCGAACTAACGCTTCTAGAAGAACAAAGGCTAAAACTAAATTGCGCATCATGA

Protein sequence

MGSSDGGDLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMSSHDGPPGYDPPTDVKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQSNKLSKLETWRSELTLLEEQRLKLNCAS

Homology

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BLAST of Cla012931 vs. Swiss-Prot
Match: PYM1_DANRE (Partner of Y14 and mago OS=Danio rerio GN=pym1 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.0e-12
Identity = 48/128 (37.50%), Postives = 69/128 (53.91%), Query Frame = 1


Query: 22  EGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMSSHDGPPG------ 81
           E  + +A T+RPDG+ RKP R+R GYVPQEEV +Y++K   + K  S  + PPG      
Sbjct: 9   ESGKYIAATQRPDGSWRKPRRVRDGYVPQEEVPVYENKFVKFFK--SKPELPPGVCVETP 68

Query: 82  ---YDPPTDVKSKTKSAKRNERKKEKRL---QIRIAEAQLQKTPLQDMKPEQ---SNKLS 135
                 P+D    +++AKRN ++KEKR    Q   +E +LQ  P    +PE    S ++ 
Sbjct: 69  PQTQTQPSDAAGLSRTAKRNMKRKEKRRQQGQETKSEPELQPEPELQPEPEPQGLSQQMQ 128

[Close]

BLAST of Cla012931 vs. Swiss-Prot
Match: PYM_BOMMO (Partner of Y14 and mago OS=Bombyx mori GN=Pym PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 48/151 (31.79%), Postives = 80/151 (52.98%), Query Frame = 1


Query: 22  EGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMSSHDG-PPGYDPPT 81
           +G + +  T+RPDGT RKP RI+ GYVPQEEV +Y+SKG  ++     +DG P G  P  
Sbjct: 12  DGSKFIPATQRPDGTWRKPRRIKEGYVPQEEVPLYESKGKQFRAR--QNDGLPVGLTPEI 71

Query: 82  DVKSKTKSAKRN------------ERKKEKRLQI--------RIAEAQLQK--TPLQDMK 141
             +++ K  +R+            E+KK+K+  +        ++A+ ++Q+   P Q + 
Sbjct: 72  VAQAQKKKGQRSTIQPIPGMIITVEKKKKKKKTVTGVEEAAEKLAKCEIQEPTLPSQSVP 131

Query: 142 PE---QSNKLSKLETWRSELTLLE--EQRLK 145
            E   QS+   +L+  R +L  +E  E+++K
Sbjct: 132 TESISQSDPTKRLKNLRKKLREIEFLEEKIK 160

[Close]

BLAST of Cla012931 vs. Swiss-Prot
Match: PYM_AEDAE (Partner of Y14 and mago OS=Aedes aegypti GN=Pym PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1


Query: 25  RILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMSSHDGPPGYDPPTDVKS 84
           + +  T+RPDGT RKP R+R GYVPQEEV +Y+SKG L+ ++      PPG  P    KS
Sbjct: 11  KFIPSTQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPLL---PPGMSPEMAQKS 70

Query: 85  KTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKP 120
           + K  +R +R K++R      EA   + P Q+  P
Sbjct: 71  REK-REREQRIKQQR------EADANRRPPQNPVP 95

[Close]

BLAST of Cla012931 vs. Swiss-Prot
Match: PYM_ANOGA (Partner of Y14 and mago OS=Anopheles gambiae GN=Pym PE=3 SV=4)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-10
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 25  RILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMSSHDGPPGYDPPTDVKS 84
           + +  T+RPDGT RKP R+R GYVPQEEV +Y+SKG  + ++ +    PPG  P  +V  
Sbjct: 11  KFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKQFAQKPAL---PPGLSP--EVVQ 70

Query: 85  KTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKP 120
           K K  +  ER ++ R + +  E Q +K     + P
Sbjct: 71  KAKEKRERERLRQAREEQQRKEQQNKKQQAGALPP 100

[Close]

BLAST of Cla012931 vs. Swiss-Prot
Match: PYM1_XENLA (Partner of Y14 and mago OS=Xenopus laevis GN=pym1 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-10
Identity = 50/158 (31.65%), Postives = 77/158 (48.73%), Query Frame = 1


Query: 25  RILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMSS-------HDGPPGYD 84
           + +A T+RPDG+ RK  +++ GYVPQEEV +Y++K   + K   S        DG  G  
Sbjct: 12  KYIASTQRPDGSWRKQRKVKEGYVPQEEVPVYENKYVKFFKSKPSLPPGLCEADGTTGQA 71

Query: 85  PPTDV---KSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMK-------PEQSN---- 144
            P+      S +K+AKRN ++KEKR Q +    Q+++T  QD++       P Q N    
Sbjct: 72  QPSKPDADASLSKTAKRNLKRKEKRKQEKGEREQVEET-RQDLERVNISDTPVQKNVTSA 131

Query: 145 --------------KLSKLETWRSELTLLEEQRLKLNC 148
                         K  K++  R +L  +EE + K++C
Sbjct: 132 HKNGSASSDNSAAEKAKKIKNLRKKLRQVEELQQKIDC 168

[Close]

BLAST of Cla012931 vs. TrEMBL
Match: A0A0A0K274_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066320 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.7e-46
Identity = 102/146 (69.86%), Postives = 117/146 (80.14%), Query Frame = 1


Query: 1   MGSSDGG--DLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60
           MGSSDGG  DL KQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS
Sbjct: 1   MGSSDGGGEDLCKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60

Query: 61  KGALWKKEMSSHDGPPGYDPP-TDVKSKTKSAKRNERKKEKRLQI-----RIAEAQLQKT 120
           KGALWKKEM+SHDGPPGY+PP TDVK+KTKSAKRNERKKEKRLQ      ++ E  + + 
Sbjct: 61  KGALWKKEMASHDGPPGYEPPTTDVKTKTKSAKRNERKKEKRLQAAHEKDKVLEQVVVEE 120

Query: 121 PLQDMKPEQSNKLSKLETWRSELTLL 139
             +  +    N+L  +++  S++  L
Sbjct: 121 ITEAKEAYVDNRLEPIQSLSSQMNEL 146

[Close]

BLAST of Cla012931 vs. TrEMBL
Match: A0A0A0K274_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066320 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-15
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 74  PGYDPPTDVKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQSNKLSKLETWRS 133
           P  +P  D +  +    +  R  +K+  IR+AEAQLQKTPLQDMKPEQ+NKLSKLETWRS
Sbjct: 157 PSSEPIDDPQLPSSDLDKRIRATKKK--IRMAEAQLQKTPLQDMKPEQANKLSKLETWRS 216

Query: 134 ELTLLEEQRLKLNCAS 150
           EL LLEEQRLKLN +S
Sbjct: 217 ELMLLEEQRLKLNSSS 230

HSP 2 Score: 188.7 bits (478), Expect = 5.0e-45
Identity = 94/129 (72.87%), Postives = 105/129 (81.40%), Query Frame = 1


Query: 12  QMTE-LSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMSSH 71
           Q+TE L KTLK+GER++ PTRRPDGTLRKPIRIRAGY PQEEVAIYQSKG LWKKEM S 
Sbjct: 20  QITEQLEKTLKQGERLVGPTRRPDGTLRKPIRIRAGYTPQEEVAIYQSKGTLWKKEMDSE 79

Query: 72  DGPPGYDPPTDVKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQSNKLSKLET 131
            GPPG+DP  + K K+KS KRNERKKEKR QIR+AEAQLQK   +DMKPEQ  K +KL+ 
Sbjct: 80  VGPPGFDPQMEAKPKSKSVKRNERKKEKRQQIRLAEAQLQKASPEDMKPEQLEKANKLDG 139

Query: 132 WRSELTLLE 140
           WR EL  LE
Sbjct: 140 WREELKHLE 148

[Close]

BLAST of Cla012931 vs. TrEMBL
Match: A0A0A0KNF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G453700 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.5e-44
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 1


Query: 2   GSSDGGDLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGA 61
           G   GGDL KQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGA
Sbjct: 8   GGGGGGDLRKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGA 67

Query: 62  LWKKEMSSHDGPPGYDPP-TDVKSKTKSAKRNERKKEKRLQ 102
           LWKKEM+SHD PPGYDPP TDVK+KTKSAKRNERKKEKRLQ
Sbjct: 68  LWKKEMASHDEPPGYDPPTTDVKTKTKSAKRNERKKEKRLQ 108

[Close]

BLAST of Cla012931 vs. TrEMBL
Match: A5BFF8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01010 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.3e-40
Identity = 81/97 (83.51%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 5   DGGDLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWK 64
           +G + LKQ+ ELSK+LKEGER+LAPTRRPDGTLRKPIRIRAGYVPQ+EVAIYQSKGALW+
Sbjct: 8   EGEEELKQLAELSKSLKEGERLLAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALWR 67

Query: 65  KEMSSHDGPPGYDPPTDVKSKTKSAKRNERKKEKRLQ 102
           KEM+S +GPPGYDPPTD K KTKS KRNERKKEKRLQ
Sbjct: 68  KEMASQEGPPGYDPPTDAKPKTKSVKRNERKKEKRLQ 104

[Close]

BLAST of Cla012931 vs. TrEMBL
Match: A5BFF8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01010 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-04
Identity = 29/84 (34.52%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 66  EMSSHDGPPGYDPPTD----VKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQ 125
           E++  + P    PP++    +     +   ++R +  + +IR+ EAQ QK   Q+MKPEQ
Sbjct: 148 ELTVTENPTTVTPPSESIECLNPGGAAPDIDKRIRALKKKIRLTEAQQQKASQQEMKPEQ 207

Query: 126 SNKLSKLETWRSELTLLEEQRLKL 146
            +K+ KLE W+ EL LLE+++ +L
Sbjct: 208 LDKMMKLEGWQKELKLLEDKKAEL 231

HSP 2 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 95/151 (62.91%), Postives = 109/151 (72.19%), Query Frame = 1


Query: 1   MGSSDGG--DLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60
           M S++GG  + L +M ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS
Sbjct: 1   MASNNGGGEEQLTKMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60

Query: 61  KGALWKKEMSSHDGPPGYDPPTDVKSKTKSAKRNERKKEKRLQIRI-----AEAQLQKTP 120
           KGALWKKEM+S  GPPGYDP  D K KTKSAKRNERKKEKRLQ  +      EA+     
Sbjct: 61  KGALWKKEMASQVGPPGYDPAMDTKPKTKSAKRNERKKEKRLQAALEKGKNLEAEADDEI 120

Query: 121 LQDMKPEQ-----SNKLSKLETWRSELTLLE 140
            ++  PE+     S  +  L +  +EL + E
Sbjct: 121 KKEDVPEEDSDHGSESVKSLTSQMTELAVSE 151

[Close]

BLAST of Cla012931 vs. NCBI nr
Match: gi|659110243|ref|XP_008455125.1| (PREDICTED: partner of Y14 and mago isoform X2 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 8.5e-46
Identity = 102/146 (69.86%), Postives = 117/146 (80.14%), Query Frame = 1


Query: 1   MGSSDGG--DLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60
           MGSSDGG  DL KQMTELSKTLKEGERILAPTRRPDGTLRKPI+IRAGYVPQEEVAIYQS
Sbjct: 1   MGSSDGGGEDLRKQMTELSKTLKEGERILAPTRRPDGTLRKPIKIRAGYVPQEEVAIYQS 60

Query: 61  KGALWKKEMSSHDGPPGYDPP-TDVKSKTKSAKRNERKKEKRLQI-----RIAEAQLQKT 120
           KGALWKKEM+SHDGPPGYDPP TDVK+KTKSAKRNERKKEKRLQ      ++ E  + + 
Sbjct: 61  KGALWKKEMASHDGPPGYDPPATDVKTKTKSAKRNERKKEKRLQAAHEKDKVLEQVVVEE 120

Query: 121 PLQDMKPEQSNKLSKLETWRSELTLL 139
             +  +    N+L  +++  S++  L
Sbjct: 121 ITEAKEAYVDNRLESIQSLSSQMNEL 146

[Close]

BLAST of Cla012931 vs. NCBI nr
Match: gi|659110243|ref|XP_008455125.1| (PREDICTED: partner of Y14 and mago isoform X2 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 74  PGYDPPTDVKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQSNKLSKLETWRS 133
           P  +P  D +  +    +  R  +K+  IR+AEAQLQKTPLQDMKPEQ+NKLSKLETWRS
Sbjct: 157 PSSEPIDDPQLPSSDLDKRIRATKKK--IRMAEAQLQKTPLQDMKPEQANKLSKLETWRS 216

Query: 134 ELTLLEEQRLKLNCAS 150
           EL LLEEQRLKLN +S
Sbjct: 217 ELMLLEEQRLKLNSSS 230

HSP 2 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 102/146 (69.86%), Postives = 117/146 (80.14%), Query Frame = 1


Query: 1   MGSSDGG--DLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60
           MGSSDGG  DL KQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS
Sbjct: 1   MGSSDGGGEDLCKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60

Query: 61  KGALWKKEMSSHDGPPGYDPP-TDVKSKTKSAKRNERKKEKRLQI-----RIAEAQLQKT 120
           KGALWKKEM+SHDGPPGY+PP TDVK+KTKSAKRNERKKEKRLQ      ++ E  + + 
Sbjct: 61  KGALWKKEMASHDGPPGYEPPTTDVKTKTKSAKRNERKKEKRLQAAHEKDKVLEQVVVEE 120

Query: 121 PLQDMKPEQSNKLSKLETWRSELTLL 139
             +  +    N+L  +++  S++  L
Sbjct: 121 ITEAKEAYVDNRLEPIQSLSSQMNEL 146

[Close]

BLAST of Cla012931 vs. NCBI nr
Match: gi|778724586|ref|XP_011658835.1| (PREDICTED: partner of Y14 and mago-like isoform X2 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 74  PGYDPPTDVKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQSNKLSKLETWRS 133
           P  +P  D +  +    +  R  +K+  IR+AEAQLQKTPLQDMKPEQ+NKLSKLETWRS
Sbjct: 157 PSSEPIDDPQLPSSDLDKRIRATKKK--IRMAEAQLQKTPLQDMKPEQANKLSKLETWRS 216

Query: 134 ELTLLEEQRLKLNCAS 150
           EL LLEEQRLKLN +S
Sbjct: 217 ELMLLEEQRLKLNSSS 230

HSP 2 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 103/147 (70.07%), Postives = 119/147 (80.95%), Query Frame = 1


Query: 1   MGSSDGG--DLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60
           MGSSDGG  DL KQMTELSKTLKEGERILAPTRRPDGTLRKPI+IRAGYVPQEEVAIYQS
Sbjct: 1   MGSSDGGGEDLRKQMTELSKTLKEGERILAPTRRPDGTLRKPIKIRAGYVPQEEVAIYQS 60

Query: 61  KGALWKKEMSSHDGPPGYDPP-TDVKSKTKSAKRNERKKEKRLQIRIAEAQ--LQKTPLQ 120
           KGALWKKEM+SHDGPPGYDPP TDVK+KTKSAKRNERKKEKRLQ    E    L++  ++
Sbjct: 61  KGALWKKEMASHDGPPGYDPPATDVKTKTKSAKRNERKKEKRLQQAAHEKDKVLEQVVVE 120

Query: 121 DMKPEQ----SNKLSKLETWRSELTLL 139
           ++   +     N+L  +++  S++  L
Sbjct: 121 EITEAKEAYVDNRLESIQSLSSQMNEL 147

[Close]

BLAST of Cla012931 vs. NCBI nr
Match: gi|659110235|ref|XP_008455121.1| (PREDICTED: partner of Y14 and mago isoform X1 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 74  PGYDPPTDVKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQSNKLSKLETWRS 133
           P  +P  D +  +    +  R  +K+  IR+AEAQLQKTPLQDMKPEQ+NKLSKLETWRS
Sbjct: 158 PSSEPIDDPQLPSSDLDKRIRATKKK--IRMAEAQLQKTPLQDMKPEQANKLSKLETWRS 217

Query: 134 ELTLLEEQRLKLNCAS 150
           EL LLEEQRLKLN +S
Sbjct: 218 ELMLLEEQRLKLNSSS 231

HSP 2 Score: 191.0 bits (484), Expect = 1.4e-45
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 1


Query: 1   MGSSDGG--DLLKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60
           MGSSDGG  DL KQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS
Sbjct: 1   MGSSDGGGEDLCKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60

Query: 61  KGALWKKEMSSHDGPPGYDPP-TDVKSKTKSAKRNERKKEKRLQ 102
           KGALWKKEM+SHDGPPGY+PP TDVK+KTKSAKRNERKKEKRLQ
Sbjct: 61  KGALWKKEMASHDGPPGYEPPTTDVKTKTKSAKRNERKKEKRLQ 104

[Close]

BLAST of Cla012931 vs. NCBI nr
Match: gi|778724564|ref|XP_011658831.1| (PREDICTED: partner of Y14 and mago-like isoform X1 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 74  PGYDPPTDVKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQSNKLSKLETWRS 133
           P  +P  D +  +    +  R  +K+  IR+AEAQLQKTPLQDMKPEQ+NKLSKLETWRS
Sbjct: 158 PSSEPIDDPQLPSSDLDKRIRATKKK--IRMAEAQLQKTPLQDMKPEQANKLSKLETWRS 217

Query: 134 ELTLLEEQRLKLNCAS 150
           EL LLEEQRLKLN +S
Sbjct: 218 ELMLLEEQRLKLNSSS 231

HSP 2 Score: 188.7 bits (478), Expect = 7.2e-45
Identity = 94/129 (72.87%), Postives = 105/129 (81.40%), Query Frame = 1


Query: 12  QMTE-LSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMSSH 71
           Q+TE L KTLK+GER++ PTRRPDGTLRKPIRIRAGY PQEEVAIYQSKG LWKKEM S 
Sbjct: 20  QITEQLEKTLKQGERLVGPTRRPDGTLRKPIRIRAGYTPQEEVAIYQSKGTLWKKEMDSE 79

Query: 72  DGPPGYDPPTDVKSKTKSAKRNERKKEKRLQIRIAEAQLQKTPLQDMKPEQSNKLSKLET 131
            GPPG+DP  + K K+KS KRNERKKEKR QIR+AEAQLQK   +DMKPEQ  K +KL+ 
Sbjct: 80  VGPPGFDPQMEAKPKSKSVKRNERKKEKRQQIRLAEAQLQKASPEDMKPEQLEKANKLDG 139

Query: 132 WRSELTLLE 140
           WR EL  LE
Sbjct: 140 WREELKHLE 148

The following BLAST results are available for this feature:

BLAST of Cla012931 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PYM1_DANRE	8.0e-12	37.50	Partner of Y14 and mago OS=Danio rerio GN=pym1 PE=2 SV=1	[more]
PYM_BOMMO	1.2e-10	31.79	Partner of Y14 and mago OS=Bombyx mori GN=Pym PE=2 SV=1	[more]
PYM_AEDAE	1.5e-10	42.11	Partner of Y14 and mago OS=Aedes aegypti GN=Pym PE=3 SV=1	[more]
PYM_ANOGA	3.4e-10	38.95	Partner of Y14 and mago OS=Anopheles gambiae GN=Pym PE=3 SV=4	[more]
PYM1_XENLA	3.4e-10	31.65	Partner of Y14 and mago OS=Xenopus laevis GN=pym1 PE=2 SV=1	[more]

BLAST of Cla012931 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K274_CUCSA	7.7e-46	69.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066320 PE=4 SV=1	[more]
A0A0A0K274_CUCSA	2.4e-15	63.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066320 PE=4 SV=1	[more]
A0A0A0KNF4_CUCSA	2.5e-44	92.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G453700 PE=4 SV=1	[more]
A5BFF8_VITVI	6.3e-40	83.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01010 PE=4 SV=...	[more]
A5BFF8_VITVI	1.9e-04	34.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01010 PE=4 SV=...	[more]

BLAST of Cla012931 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110243\|ref\|XP_008455125.1\|	8.5e-46	69.86	PREDICTED: partner of Y14 and mago isoform X2 [Cucumis melo]	[more]
gi\|659110243\|ref\|XP_008455125.1\|	3.5e-15	63.16	PREDICTED: partner of Y14 and mago isoform X2 [Cucumis melo]	[more]
gi\|778724586\|ref\|XP_011658835.1\|	3.5e-15	63.16	PREDICTED: partner of Y14 and mago-like isoform X2 [Cucumis sativus]	[more]
gi\|659110235\|ref\|XP_008455121.1\|	3.5e-15	63.16	PREDICTED: partner of Y14 and mago isoform X1 [Cucumis melo]	[more]
gi\|778724564\|ref\|XP_011658831.1\|	3.5e-15	63.16	PREDICTED: partner of Y14 and mago-like isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015362	WIBG_mago-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010628	positive regulation of gene expression
biological_process	GO:0008150	biological_process
biological_process	GO:1903259	exon-exon junction complex disassembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0031981	nuclear lumen
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0035145	exon-exon junction complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05667	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU10232	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU10302	watermelon EST collection version 2.0	transcribed_cluster
WMU17325	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU37376	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU38747	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU72395	watermelon EST collection version 2.0	transcribed_cluster
WMU72468	watermelon EST collection version 2.0	transcribed_cluster
WMU72895	watermelon EST collection version 2.0	transcribed_cluster
WMU73854	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012931	Cla012931.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU38747	WMU38747	transcribed_cluster
WMU37376	WMU37376	transcribed_cluster
WMU05667	WMU05667	transcribed_cluster
WMU72895	WMU72895	transcribed_cluster
WMU17325	WMU17325	transcribed_cluster
WMU72395	WMU72395	transcribed_cluster
WMU72468	WMU72468	transcribed_cluster
WMU73854	WMU73854	transcribed_cluster
WMU10232	WMU10232	transcribed_cluster
WMU10302	WMU10302	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015362	WIBG family	PFAM	PF09282	Mago-bind	coord: 23..49 score: 4.1
IPR015362	WIBG family	SMART	SM01273	Mago_bind_2	coord: 23..49 score: 2.1
IPR015362	WIBG family	unknown	SSF101931	Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain	coord: 21..49 score: 6.9
None	No IPR available	unknown	Coil	Coil	coord: 90..110 scor
None	No IPR available	PANTHER	PTHR22959	PYM PROTEIN	coord: 19..101 score: 6.5
None	No IPR available	PANTHER	PTHR22959:SF0	PARTNER OF Y14 AND MAGO	coord: 19..101 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012931	Cla97C09G177970	Watermelon (97103) v2	wmwmbB043
Cla012931	Csa7G066320	Cucumber (Chinese Long) v2	cuwmB556
Cla012931	MELO3C018586	Melon (DHL92) v3.5.1	mewmB206
Cla012931	ClCG09G016220	Watermelon (Charleston Gray)	wcgwmB009
Cla012931	CSPI07G06100	Wild cucumber (PI 183967)	cpiwmB574
Cla012931	Cucsa.218430	Cucumber (Gy14) v1	cgywmB415
Cla012931	Lsi03G006930	Bottle gourd (USVL1VR-Ls)	lsiwmB233
Cla012931	CsGy7G005780	Cucumber (Gy14) v2	cgybwmB518
Cla012931	MELO3C018586.2	Melon (DHL92) v3.6.1	medwmB202
Cla012931	CsaV3_7G007080	Cucumber (Chinese Long) v3	cucwmB580
Cla012931	Bhi05G000782	Wax gourd	wgowmB243

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012931	Cucurbita maxima (Rimu)	cmawmB075
Cla012931	Cucurbita maxima (Rimu)	cmawmB473
Cla012931	Cucurbita moschata (Rifu)	cmowmB071
Cla012931	Cucurbita moschata (Rifu)	cmowmB466
Cla012931	Cucurbita pepo (Zucchini)	cpewmB237
Cla012931	Cucurbita pepo (Zucchini)	cpewmB632
Cla012931	Silver-seed gourd	carwmB0282
Cla012931	Silver-seed gourd	carwmB0732