Cla012882 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012882
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DNA replication licensing factor MCM9 (AHRD V1 **-- F4X0H9_ACREC); contains Interpro domain(s) IPR016027 Nucleic acid-binding, OB-fold-like
Location	Chr9 : 19994499 .. 19995736 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATCCTCCTACTAGTCCCCTCAAGGCCTTCGCTACGTTTCTAATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAGTAAGCAATTCCATGTCCTTCCTTGTTTCTCTCTTTTCTCTTTTTCTCACCCGCATTTCTTCTTTCAATTAGATTCGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATGTTTGTAATCTAATAGTTTTTCAAACCTTACTTACGCCTCGCCTCGTGCACTATTAATGTTCATTTTTGTGGTGGTCGTTGCAGAAGATCATTTTGGGTGATTCGAAAGGTTCCATGAATGGAATTGAGAAATATTTCATCCATGTTCGTATTAACGTCATTGGCTCCCCGCTGGAATTGCCTGGTATGTATCTGTTTCTGAGTTTTATTGCTGAAATGTTGATTACTCTTCTGTCAATAGTTGGGGTTCGTTTGATTGAGTTATTGTTGTTCGCGTTCTGTTTGGTTTTAGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACCGTAATCCGATCTGGGGCAATTAAGATGTATGAGGGTAAGAGGTGGTATATCTGCCGGAAATGCAAGCACAAGTGAGTTGAATTTACTTATGTTTCAAACTTCATTCGCCTATGAATGTACTTACATGCAACACCTTGCTGGTTCGAGTTTTCACCATGTTATGATTCGGTTCAACCATCTTTAGGATCCCAATTGTATGATCCACCCTTTCCTCCTCTCCTTTCTCGATTGTATTAATTTTGAATAGGATATAGCAGCCCTTGAGGATGTTAGAGACGGAATAGTGGAAGTTTCGAAGCCCTTAGGTTCAATTACTAATGCCAATATTATTGCTGAATTAACAATGACATTAGCTTGAACGGGCCAGAGAACGTTTCATATATTTTTTGAAGGGAAAAAACTCCAGTAATTTGGTATTTGGTAGCTTTGCATTTCAATTTTATTGTAACAAATGTGATAGCTTGAACACTATGGCCTCCTCTCCGTTCCCCCTTCCACAGTCTCCCATGGCCTTACCCTTCCCTAATCACCTTCCATGCCGGATTCCTTTCTCCATGAAAGCTTGGAGCTTCACTTAG

mRNA sequence

ATGGACGATCCTCCTACTAGTCCCCTCAAGGCCTTCGCTACGTTTCTAATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTCGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCATTTTGGGTGATTCGAAAGGTTCCATGAATGGAATTGAGAAATATTTCATCCATGTTCGTATTAACGTCATTGGCTCCCCGCTGGAATTGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACCGTAATCCGATCTGGGGCAATTAAGATGTATGAGGGTAAGAGGTGGTATATCTGCCGGAAATGCAAGCACAACTTGAACACTATGGCCTCCTCTCCGTTCCCCCTTCCACAGTCTCCCATGGCCTTACCCTTCCCTAATCACCTTCCATGCCGGATTCCTTTCTCCATGAAAGCTTGGAGCTTCACTTAG

Coding sequence (CDS)

ATGGACGATCCTCCTACTAGTCCCCTCAAGGCCTTCGCTACGTTTCTAATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTCGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCATTTTGGGTGATTCGAAAGGTTCCATGAATGGAATTGAGAAATATTTCATCCATGTTCGTATTAACGTCATTGGCTCCCCGCTGGAATTGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACCGTAATCCGATCTGGGGCAATTAAGATGTATGAGGGTAAGAGGTGGTATATCTGCCGGAAATGCAAGCACAACTTGAACACTATGGCCTCCTCTCCGTTCCCCCTTCCACAGTCTCCCATGGCCTTACCCTTCCCTAATCACCTTCCATGCCGGATTCCTTTCTCCATGAAAGCTTGGAGCTTCACTTAG

Protein sequence

MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKHNLNTMASSPFPLPQSPMALPFPNHLPCRIPFSMKAWSFT

Homology

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BLAST of Cla012882 vs. Swiss-Prot
Match: MCM9_ARATH (Probable DNA helicase MCM9 OS=Arabidopsis thaliana GN=MCM9 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.4e-50
Identity = 106/185 (57.30%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 9   LKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIF 68
           +++   FL++H+ DQLR I+ S DPKLHYPLF+E+AEL+DD+P LAR VFS P  YLR F
Sbjct: 11  IESMTEFLVKHYPDQLREISLSSDPKLHYPLFIEYAELVDDNPSLARQVFSDPEHYLRQF 70

Query: 69  DDAAVWAHKIILGDSK--GSMNGIEKYFIHVRINVIGSPLE-LPETFPSIGSVRVKHRGV 128
           DD+A+ AHKI L   K      GIEK FIHVRIN  GSPLE  PETFPSIG VRVKHRG+
Sbjct: 71  DDSAILAHKIALEHMKKFEEKIGIEKRFIHVRINTSGSPLERSPETFPSIGRVRVKHRGI 130

Query: 129 LLTLKGTVIRSGAIKMYEGKRWYICRKCKH---------NLNTMASSPFPLPQSPMALPF 182
           L+ LKGTVIRSGA+KMYEG++ Y CRKCKH         ++N++   PF   Q   A   
Sbjct: 131 LMMLKGTVIRSGAVKMYEGEKMYRCRKCKHMFPIFPELESINSIVKPPFCPSQRSKACEG 190

[Close]

BLAST of Cla012882 vs. Swiss-Prot
Match: MCM9_ORYSI (Probable DNA helicase MCM9 OS=Oryza sativa subsp. indica GN=MCM9 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.4e-34
Identity = 79/148 (53.38%), Postives = 93/148 (62.84%), Query Frame = 1


Query: 14  TFLIRHHSDQLRSIA-HSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFDDAA 73
           +FL R H+D LR I    PD KLH+PL ++FAEL++ DP +A  ++  P D L +FD AA
Sbjct: 22  SFLNRFHADDLRRILLPDPDGKLHFPLVIDFAELLEFDPEVAHQLYDYPKDVLELFDAAA 81

Query: 74  VWAHKII------LGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVL 133
             A              K     +EK F+HVR+N  GSPLE PE  PSIG VRVKHRG L
Sbjct: 82  QRALDKFDAAARRADKRKAGDEPMEKKFVHVRVNTSGSPLECPEASPSIGKVRVKHRGTL 141

Query: 134 LTLKGTVIRSGAIKMYEGKRWYICRKCK 155
           LTLKGTVIRSG +KM EG+R Y CRKCK
Sbjct: 142 LTLKGTVIRSGGVKMIEGERKYQCRKCK 169

[Close]

BLAST of Cla012882 vs. Swiss-Prot
Match: MCM9_ORYSJ (Probable DNA helicase MCM9 OS=Oryza sativa subsp. japonica GN=MCM9 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.3e-33
Identity = 78/148 (52.70%), Postives = 92/148 (62.16%), Query Frame = 1


Query: 14  TFLIRHHSDQLRSIAHS-PDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFDDAA 73
           +FL R H+D LR I    PD KLH+PL ++FAEL++ DP +A  ++  P D L +FD AA
Sbjct: 22  SFLNRFHADDLRRILLPFPDGKLHFPLVIDFAELLEFDPEVAHQLYDYPKDVLELFDAAA 81

Query: 74  VWAHKII------LGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVL 133
             A              K     +EK F+HVR+N  GS LE PE  PSIG VRVKHRG L
Sbjct: 82  QRALDKFDAAARRADKRKAGDETMEKKFVHVRVNTSGSALECPEASPSIGKVRVKHRGTL 141

Query: 134 LTLKGTVIRSGAIKMYEGKRWYICRKCK 155
           LTLKGTVIRSG +KM EG+R Y CRKCK
Sbjct: 142 LTLKGTVIRSGGVKMIEGERKYQCRKCK 169

[Close]

BLAST of Cla012882 vs. Swiss-Prot
Match: MCM9_CHICK (DNA helicase MCM9 OS=Gallus gallus GN=MCM9 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 47/147 (31.97%), Postives = 70/147 (47.62%), Query Frame = 1


Query: 10  KAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFD 69
           + F ++L++HH D +  I    D + HYP+ V+   L + +  +     + P+  L IFD
Sbjct: 13  QVFESYLLQHHRDDILGILRQGDDEAHYPVLVDALTLFETNMEIGEYFNAFPSQVLPIFD 72

Query: 70  DAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELP-ETFPSIGSVRVKHRGVLLT 129
            A   A   +L  +  S     K  +H RI+ +    EL  E  P    V     G  L+
Sbjct: 73  GALRRAAMAVLQAATPSPELRMKPNLHARISGLPICPELTREHIPKTRDV-----GHFLS 132

Query: 130 LKGTVIRSGAIKMYEGKRWYICRKCKH 156
           + GTVIR+  +K+ E +R YIC KCKH
Sbjct: 133 VTGTVIRTSLVKVLEFERSYICNKCKH 154

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BLAST of Cla012882 vs. Swiss-Prot
Match: MCM9_XENLA (DNA helicase MCM9 OS=Xenopus laevis GN=mcm9 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.3e-09
Identity = 41/153 (26.80%), Postives = 68/153 (44.44%), Query Frame = 1


Query: 10  KAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFD 69
           + F +F++ HH +++  I    +   HY L V    L + +  +     + P + L +FD
Sbjct: 13  QVFESFVLEHHKNEIAQILTEKEEHAHYSLVVNAMTLFEANMEIGEYFNAFPNEVLPVFD 72

Query: 70  DAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELP-ETFPSIGSVRVKHRGVLLT 129
           +A   A    L         + K  +H RI  +    EL  E  P     R +  G  L+
Sbjct: 73  NALRCAAMSFLQSCSEKYTFLMKQNLHARITGLPVCPELTREHIP-----RTRDVGHFLS 132

Query: 130 LKGTVIRSGAIKMYEGKRWYICRKCKHNLNTMA 162
           + GTVIR+  +K+ E ++ ++C KCKH +   A
Sbjct: 133 VTGTVIRTSLVKVLEYEQDFMCNKCKHVVTVKA 160

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BLAST of Cla012882 vs. TrEMBL
Match: A0A0A0K618_CUCSA (Minichromosome maintenance protein MCM OS=Cucumis sativus GN=Csa_7G064040 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.9e-79
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1   MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSR 60
           M+D PTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARL+FSR
Sbjct: 8   MEDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSR 67

Query: 61  PTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRV 120
           PTDYLR+FDDAAVWAH IILGDSKGSMNG++K FIHVRINV GSPLE PETFPSIGSVRV
Sbjct: 68  PTDYLRVFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRV 127

Query: 121 KHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKH 156
           KH GVLLTLKGTVIRSGAIKMYEG+RWYICRKCKH
Sbjct: 128 KHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKH 162

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BLAST of Cla012882 vs. TrEMBL
Match: V4UCN4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029860mg PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.1e-59
Identity = 113/173 (65.32%), Postives = 134/173 (77.46%), Query Frame = 1


Query: 9   LKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIF 68
           LKA A F+IRHHSDQLRSI  SPDPKLHYPL+++FAEL+D+DP +A LVFS+P DYLR F
Sbjct: 10  LKALAEFVIRHHSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFF 69

Query: 69  DDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVLLT 128
           +DAA+WAHKI+  + K     +EK FIHVRINV GSPLE PETFPSIG VRVKH GVLLT
Sbjct: 70  EDAAIWAHKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLT 129

Query: 129 LKGTVIRSGAIKMYEGKRWYICRKCKHNLNTMASSPFPLPQSPMALPFPNHLP 182
           LKGTVIRSGA KMYEG+R Y+CRKCKH         +P  ++  ++  P+H P
Sbjct: 130 LKGTVIRSGATKMYEGERTYMCRKCKHMFPV-----YPELETRNSIVLPSHCP 177

[Close]

BLAST of Cla012882 vs. TrEMBL
Match: A0A067DTW5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0060512mg PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.1e-59
Identity = 113/173 (65.32%), Postives = 134/173 (77.46%), Query Frame = 1


Query: 9   LKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIF 68
           LKA A F+IRHHSDQLRSI  SPDPKLHYPL+++FAEL+D+DP +A LVFS+P DYLR F
Sbjct: 10  LKALAEFVIRHHSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFF 69

Query: 69  DDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVLLT 128
           +DAA+WAHKI+  + K     +EK FIHVRINV GSPLE PETFPSIG VRVKH GVLLT
Sbjct: 70  EDAAIWAHKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLT 129

Query: 129 LKGTVIRSGAIKMYEGKRWYICRKCKHNLNTMASSPFPLPQSPMALPFPNHLP 182
           LKGTVIRSGA KMYEG+R Y+CRKCKH         +P  ++  ++  P+H P
Sbjct: 130 LKGTVIRSGATKMYEGERTYMCRKCKHMFPV-----YPELETRNSIVLPSHCP 177

[Close]

BLAST of Cla012882 vs. TrEMBL
Match: B9SIK6_RICCO (Minichromosome maintenance protein MCM, putative OS=Ricinus communis GN=RCOM_0821870 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.1e-55
Identity = 113/180 (62.78%), Postives = 133/180 (73.89%), Query Frame = 1


Query: 2   DDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRP 61
           DD     +KA A FLIRH+S QLRSI  + DPKLHYPLF+ FAELMD++P L+ LVFS+P
Sbjct: 7   DDEQPDQVKALAEFLIRHYSSQLRSIVLAADPKLHYPLFIHFAELMDENPLLSHLVFSQP 66

Query: 62  TDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVK 121
           T++LR FD AA+WAHKI+L +      GIEK FIHVRINV GSPLE PETFPSIG VRVK
Sbjct: 67  TEFLRHFDKAALWAHKIVLKNLDFGEKGIEKKFIHVRINVSGSPLECPETFPSIGRVRVK 126

Query: 122 HRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKHNLNTMASSPFPLPQSPMALPFPNHLP 181
           HRG+LLTLKGTVIRSGAIKMYEG+R Y CRKCK          +P  +S  ++  P+  P
Sbjct: 127 HRGILLTLKGTVIRSGAIKMYEGERMYRCRKCKQEFPV-----YPELESRNSITLPSFCP 181

[Close]

BLAST of Cla012882 vs. TrEMBL
Match: A0A0D2ST21_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G016500 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-54
Identity = 105/147 (71.43%), Postives = 119/147 (80.95%), Query Frame = 1


Query: 9   LKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIF 68
           L +   +L+  HSDQLRSI  SPDPKLHYPLFV++AELMD DPPLARLVF+ PTDYLR F
Sbjct: 13  LHSAVEYLLHSHSDQLRSIILSPDPKLHYPLFVDYAELMDADPPLARLVFANPTDYLRFF 72

Query: 69  DDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVLLT 128
           D AA+ AHK +L D      G+EK FIHVR NV GSPLE PETFP+IG VRVKHRG+LLT
Sbjct: 73  DQAAILAHKRVLKDMVSHEKGVEKKFIHVRFNVCGSPLEFPETFPTIGRVRVKHRGILLT 132

Query: 129 LKGTVIRSGAIKMYEGKRWYICRKCKH 156
           LKGTVIRSGA+KMYEG+R Y C+KCKH
Sbjct: 133 LKGTVIRSGAVKMYEGQRTYQCKKCKH 159

[Close]

BLAST of Cla012882 vs. NCBI nr
Match: gi|659110324|ref|XP_008455167.1| (PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 5.8e-79
Identity = 144/155 (92.90%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1   MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSR 60
           MDD PT+PLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARL+FSR
Sbjct: 8   MDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSR 67

Query: 61  PTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRV 120
           PTDYLRIFDDAAVWAH IILGDSKGSMNG++K FIHVRINV GSPLE PETFPSIGSVRV
Sbjct: 68  PTDYLRIFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRV 127

Query: 121 KHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKH 156
           KH GVLLTLKGTVIRSGAIKMYEG+RWYICRKCKH
Sbjct: 128 KHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKH 162

[Close]

BLAST of Cla012882 vs. NCBI nr
Match: gi|659110326|ref|XP_008455168.1| (PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 5.8e-79
Identity = 144/155 (92.90%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1   MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSR 60
           MDD PT+PLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARL+FSR
Sbjct: 8   MDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSR 67

Query: 61  PTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRV 120
           PTDYLRIFDDAAVWAH IILGDSKGSMNG++K FIHVRINV GSPLE PETFPSIGSVRV
Sbjct: 68  PTDYLRIFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRV 127

Query: 121 KHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKH 156
           KH GVLLTLKGTVIRSGAIKMYEG+RWYICRKCKH
Sbjct: 128 KHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKH 162

[Close]

BLAST of Cla012882 vs. NCBI nr
Match: gi|659110328|ref|XP_008455169.1| (PREDICTED: probable DNA helicase MCM9 isoform X3 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 5.8e-79
Identity = 144/155 (92.90%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1   MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSR 60
           MDD PT+PLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARL+FSR
Sbjct: 8   MDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSR 67

Query: 61  PTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRV 120
           PTDYLRIFDDAAVWAH IILGDSKGSMNG++K FIHVRINV GSPLE PETFPSIGSVRV
Sbjct: 68  PTDYLRIFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRV 127

Query: 121 KHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKH 156
           KH GVLLTLKGTVIRSGAIKMYEG+RWYICRKCKH
Sbjct: 128 KHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKH 162

[Close]

BLAST of Cla012882 vs. NCBI nr
Match: gi|778724465|ref|XP_011658809.1| (PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 9.9e-79
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1   MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSR 60
           M+D PTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARL+FSR
Sbjct: 8   MEDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSR 67

Query: 61  PTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRV 120
           PTDYLR+FDDAAVWAH IILGDSKGSMNG++K FIHVRINV GSPLE PETFPSIGSVRV
Sbjct: 68  PTDYLRVFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRV 127

Query: 121 KHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKH 156
           KH GVLLTLKGTVIRSGAIKMYEG+RWYICRKCKH
Sbjct: 128 KHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKH 162

[Close]

BLAST of Cla012882 vs. NCBI nr
Match: gi|778724461|ref|XP_004137058.2| (PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 9.9e-79
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1   MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSR 60
           M+D PTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARL+FSR
Sbjct: 8   MEDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSR 67

Query: 61  PTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRV 120
           PTDYLR+FDDAAVWAH IILGDSKGSMNG++K FIHVRINV GSPLE PETFPSIGSVRV
Sbjct: 68  PTDYLRVFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRV 127

Query: 121 KHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKH 156
           KH GVLLTLKGTVIRSGAIKMYEG+RWYICRKCKH
Sbjct: 128 KHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKH 162

The following BLAST results are available for this feature:

BLAST of Cla012882 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MCM9_ARATH	7.4e-50	57.30	Probable DNA helicase MCM9 OS=Arabidopsis thaliana GN=MCM9 PE=3 SV=1	[more]
MCM9_ORYSI	4.4e-34	53.38	Probable DNA helicase MCM9 OS=Oryza sativa subsp. indica GN=MCM9 PE=3 SV=1	[more]
MCM9_ORYSJ	6.3e-33	52.70	Probable DNA helicase MCM9 OS=Oryza sativa subsp. japonica GN=MCM9 PE=2 SV=1	[more]
MCM9_CHICK	1.4e-11	31.97	DNA helicase MCM9 OS=Gallus gallus GN=MCM9 PE=1 SV=2	[more]
MCM9_XENLA	6.3e-09	26.80	DNA helicase MCM9 OS=Xenopus laevis GN=mcm9 PE=1 SV=1	[more]

BLAST of Cla012882 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K618_CUCSA	6.9e-79	92.26	Minichromosome maintenance protein MCM OS=Cucumis sativus GN=Csa_7G064040 PE=3 S...	[more]
V4UCN4_9ROSI	6.1e-59	65.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029860mg PE=3 SV=1	[more]
A0A067DTW5_CITSI	6.1e-59	65.32	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0060512mg PE=3 ...	[more]
B9SIK6_RICCO	4.1e-55	62.78	Minichromosome maintenance protein MCM, putative OS=Ricinus communis GN=RCOM_082...	[more]
A0A0D2ST21_GOSRA	2.6e-54	71.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G016500 PE=3 SV=1	[more]

BLAST of Cla012882 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110324\|ref\|XP_008455167.1\|	5.8e-79	92.90	PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis melo]	[more]
gi\|659110326\|ref\|XP_008455168.1\|	5.8e-79	92.90	PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis melo]	[more]
gi\|659110328\|ref\|XP_008455169.1\|	5.8e-79	92.90	PREDICTED: probable DNA helicase MCM9 isoform X3 [Cucumis melo]	[more]
gi\|778724465\|ref\|XP_011658809.1\|	9.9e-79	92.26	PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis sativus]	[more]
gi\|778724461\|ref\|XP_004137058.2\|	9.9e-79	92.26	PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0042555	MCM complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012882	Cla012882.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 36..165 score: 1.88
None	No IPR available	GENE3D	G3DSA:3.30.1640.10		coord: 10..72 score: 2.
None	No IPR available	PANTHER	PTHR11630	DNA REPLICATION LICENSING FACTOR	coord: 12..170 score: 2.2
None	No IPR available	PANTHER	PTHR11630:SF48	DNA HELICASE MCM9	coord: 12..170 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012882	Cla97C09G177620	Watermelon (97103) v2	wmwmbB043
Cla012882	Csa7G064040	Cucumber (Chinese Long) v2	cuwmB557
Cla012882	MELO3C018620	Melon (DHL92) v3.5.1	mewmB207
Cla012882	ClCG09G015670	Watermelon (Charleston Gray)	wcgwmB009
Cla012882	CSPI07G05760	Wild cucumber (PI 183967)	cpiwmB575
Cla012882	Cucsa.218140	Cucumber (Gy14) v1	cgywmB416
Cla012882	CmaCh19G004660	Cucurbita maxima (Rimu)	cmawmB473
Cla012882	CmoCh19G004820	Cucurbita moschata (Rifu)	cmowmB466
Cla012882	Lsi03G007380	Bottle gourd (USVL1VR-Ls)	lsiwmB233
Cla012882	Cp4.1LG15g03640	Cucurbita pepo (Zucchini)	cpewmB237
Cla012882	CsGy7G005480	Cucumber (Gy14) v2	cgybwmB518
Cla012882	MELO3C018619.2	Melon (DHL92) v3.6.1	medwmB203
Cla012882	Carg22822	Silver-seed gourd	carwmB0282
Cla012882	CsaV3_7G006750	Cucumber (Chinese Long) v3	cucwmB580
Cla012882	Bhi05G000733	Wax gourd	wgowmB243

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012882	Silver-seed gourd	carwmB0364
Cla012882	Cucurbita maxima (Rimu)	cmawmB075
Cla012882	Cucurbita moschata (Rifu)	cmowmB071
Cla012882	Cucurbita pepo (Zucchini)	cpewmB632