MELO3C018620 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018620
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Probable DNA helicase MCM9
Location	chr1 : 1556468 .. 1556617 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATCTCCTTGGCATCAATGGATGATTCTCCTACTACTCCCCTCAAGGCCTTTGCTACCTTTCTTATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAGTAA

mRNA sequence

ATGGACATCTCCTTGGCATCAATGGATGATTCTCCTACTACTCCCCTCAAGGCCTTTGCTACCTTTCTTATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAGTAA

Coding sequence (CDS)

ATGGACATCTCCTTGGCATCAATGGATGATTCTCCTACTACTCCCCTCAAGGCCTTTGCTACCTTTCTTATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAGTAA

Protein sequence

MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE*

Homology

[Close]

BLAST of MELO3C018620 vs. TrEMBL
Match: A0A0A0K618_CUCSA (Minichromosome maintenance protein MCM OS=Cucumis sativus GN=Csa_7G064040 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-18
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1


Query: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          MD SLASM+DSPT+PLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE
Sbjct: 1  MDSSLASMEDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 49

[Close]

BLAST of MELO3C018620 vs. TrEMBL
Match: W9RAS5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026525 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-08
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 12 PTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFV 49
          P  P+K+ A FLIRHH DQL SI HSPDPKLHYPLF+
Sbjct: 4  PPVPVKSLAAFLIRHHFDQLSSITHSPDPKLHYPLFI 40

[Close]

BLAST of MELO3C018620 vs. TrEMBL
Match: W9SA64_9ROSA (DNA replication licensing factor MCM9 OS=Morus notabilis GN=L484_004121 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-07
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1


Query: 12 PTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          P  P+K+ A FLIR HSDQL SIA SP+PKLHYPLFV+
Sbjct: 4  PPVPVKSLAAFLIRRHSDQLSSIALSPEPKLHYPLFVD 41

[Close]

BLAST of MELO3C018620 vs. TrEMBL
Match: A0A067DTW5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0060512mg PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-07
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 16 LKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          LKA A F+IRHHSDQLRSI  SPDPKLHYPL+++
Sbjct: 10 LKALAEFVIRHHSDQLRSITLSPDPKLHYPLYID 43

[Close]

BLAST of MELO3C018620 vs. TrEMBL
Match: V4UCN4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029860mg PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-07
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 16 LKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          LKA A F+IRHHSDQLRSI  SPDPKLHYPL+++
Sbjct: 10 LKALAEFVIRHHSDQLRSITLSPDPKLHYPLYID 43

[Close]

BLAST of MELO3C018620 vs. TAIR10
Match: AT2G14050.1 (AT2G14050.1 minichromosome maintenance 9)

HSP 1 Score: 49.3 bits (116), Expect = 8.1e-07
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1


Query: 10 DSPTTP---LKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          +SPT     +++   FL++H+ DQLR I+ S DPKLHYPLF+E
Sbjct: 2  ESPTQTSEHIESMTEFLVKHYPDQLREISLSSDPKLHYPLFIE 44

[Close]

BLAST of MELO3C018620 vs. NCBI nr
Match: gi|659110324|ref|XP_008455167.1| (PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE
Sbjct: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 49

[Close]

BLAST of MELO3C018620 vs. NCBI nr
Match: gi|659110326|ref|XP_008455168.1| (PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE
Sbjct: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 49

[Close]

BLAST of MELO3C018620 vs. NCBI nr
Match: gi|659110328|ref|XP_008455169.1| (PREDICTED: probable DNA helicase MCM9 isoform X3 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE
Sbjct: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 49

[Close]

BLAST of MELO3C018620 vs. NCBI nr
Match: gi|778724465|ref|XP_011658809.1| (PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-18
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1


Query: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          MD SLASM+DSPT+PLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE
Sbjct: 1  MDSSLASMEDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 49

[Close]

BLAST of MELO3C018620 vs. NCBI nr
Match: gi|778724461|ref|XP_004137058.2| (PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-18
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1


Query: 1  MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 50
          MD SLASM+DSPT+PLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE
Sbjct: 1  MDSSLASMEDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVE 49

The following BLAST results are available for this feature:

BLAST of MELO3C018620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K618_CUCSA	3.0e-18	93.88	Minichromosome maintenance protein MCM OS=Cucumis sativus GN=Csa_7G064040 PE=3 S...	[more]
W9RAS5_9ROSA	4.8e-08	72.97	Uncharacterized protein OS=Morus notabilis GN=L484_026525 PE=4 SV=1	[more]
W9SA64_9ROSA	6.9e-07	71.05	DNA replication licensing factor MCM9 OS=Morus notabilis GN=L484_004121 PE=3 SV=...	[more]
A0A067DTW5_CITSI	9.0e-07	76.47	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0060512mg PE=3 ...	[more]
V4UCN4_9ROSI	9.0e-07	76.47	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029860mg PE=3 SV=1	[more]

BLAST of MELO3C018620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14050.1	8.1e-07	51.16	minichromosome maintenance 9	[more]

BLAST of MELO3C018620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110324\|ref\|XP_008455167.1\|	1.0e-19	100.00	PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis melo]	[more]
gi\|659110326\|ref\|XP_008455168.1\|	1.0e-19	100.00	PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis melo]	[more]
gi\|659110328\|ref\|XP_008455169.1\|	1.0e-19	100.00	PREDICTED: probable DNA helicase MCM9 isoform X3 [Cucumis melo]	[more]
gi\|778724465\|ref\|XP_011658809.1\|	4.3e-18	93.88	PREDICTED: probable DNA helicase MCM9 isoform X2 [Cucumis sativus]	[more]
gi\|778724461\|ref\|XP_004137058.2\|	4.3e-18	93.88	PREDICTED: probable DNA helicase MCM9 isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018620T1	MELO3C018620T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018620	Cla012882	Watermelon (97103) v1	mewmB207
MELO3C018620	Lsi03G007380	Bottle gourd (USVL1VR-Ls)	lsimeB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018620	Cucurbita moschata (Rifu)	cmomeB085
MELO3C018620	Cucurbita moschata (Rifu)	cmomeB454
MELO3C018620	Wild cucumber (PI 183967)	cpimeB538
MELO3C018620	Cucumber (Chinese Long) v2	cumeB530
MELO3C018620	Watermelon (Charleston Gray)	mewcgB176
MELO3C018620	Cucurbita pepo (Zucchini)	cpemeB604
MELO3C018620	Cucumber (Gy14) v2	cgybmeB468
MELO3C018620	Silver-seed gourd	carmeB0289
MELO3C018620	Cucumber (Chinese Long) v3	cucmeB548
MELO3C018620	Watermelon (97103) v2	mewmbB224
MELO3C018620	Wax gourd	mewgoB220
MELO3C018620	Cucumber (Gy14) v1	cgymeB379
MELO3C018620	Cucurbita maxima (Rimu)	cmameB098
MELO3C018620	Cucurbita maxima (Rimu)	cmameB463