Cla012775 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012775
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 26376082 .. 26376264 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAACCAGGAAAATGTTGATGCAGATGGGAAAGTGGAATCTGTAATATCTATTCAAACATCAGAGTACGATAGTTGGGGCAATTTGGGTGATGATGATATCATGCTGCAGAAATCTGCAATTTTTGTTCAGGAAGCTGAGAAAGTTCCATTTGTTGGTGACAAGGCATGTTTCACCTAA

mRNA sequence

ATGCAGAACCAGGAAAATGTTGATGCAGATGGGAAAGTGGAATCTGTAATATCTATTCAAACATCAGAGTACGATAGTTGGGGCAATTTGGGTGATGATGATATCATGCTGCAGAAATCTGCAATTTTTGTTCAGGAAGCTGAGAAAGTTCCATTTGTTGGTGACAAGGCATGTTTCACCTAA

Coding sequence (CDS)

ATGCAGAACCAGGAAAATGTTGATGCAGATGGGAAAGTGGAATCTGTAATATCTATTCAAACATCAGAGTACGATAGTTGGGGCAATTTGGGTGATGATGATATCATGCTGCAGAAATCTGCAATTTTTGTTCAGGAAGCTGAGAAAGTTCCATTTGTTGGTGACAAGGCATGTTTCACCTAA

Protein sequence

MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDKACFT

Homology

[Close]

BLAST of Cla012775 vs. TrEMBL
Match: A0A0A0KX37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007720 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-22
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1


Query: 1  MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 57
          MQNQEN+DADGK ESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKAESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 56

[Close]

BLAST of Cla012775 vs. TrEMBL
Match: M5XZ09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007269mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 1   MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 57
           MQNQ+ V  DG+VES  S+ T E+D W N GD DIM Q SAI  +EAEK+PF+GDK
Sbjct: 74  MQNQDGVQVDGEVESATSVPTPEFDEWANFGDQDIMQQHSAIRAEEAEKIPFLGDK 129

[Close]

BLAST of Cla012775 vs. TrEMBL
Match: A0A061E5K2_THECC (Otubain, Ubiquitin thioesterase Otubain, Peptidase C65, otubain isoform 1 OS=Theobroma cacao GN=TCM_008341 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.2e-11
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 1  MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDKACFT 60
          MQN+E V ADG+ ES +SI  SE+D W    DDDIM Q+SA   +EA+KVPFVGDK   T
Sbjct: 1  MQNREGVVADGEKESAVSIPVSEFDDWAKFADDDIMQQQSAFHAEEAKKVPFVGDKEPLT 60

[Close]

BLAST of Cla012775 vs. TrEMBL
Match: A0A061EBG4_THECC (Ubiquitin thioesterase otubain-like isoform 8 OS=Theobroma cacao GN=TCM_008341 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.2e-11
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 1  MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDKACFT 60
          MQN+E V ADG+ ES +SI  SE+D W    DDDIM Q+SA   +EA+KVPFVGDK   T
Sbjct: 1  MQNREGVVADGEKESAVSIPVSEFDDWAKFADDDIMQQQSAFHAEEAKKVPFVGDKEPLT 60

[Close]

BLAST of Cla012775 vs. TrEMBL
Match: A0A0D2RIG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G197000 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.1e-10
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1


Query: 1  MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 57
          MQNQ+   AD + ES +SI  SE D W N  DDDIM Q+SAI  +EA+K+PFVGDK
Sbjct: 1  MQNQDGAVADREKESAVSIPISEVDDWANFADDDIMQQQSAIHAEEAKKIPFVGDK 56

[Close]

BLAST of Cla012775 vs. NCBI nr
Match: gi|449468900|ref|XP_004152159.1| (PREDICTED: ubiquitin thioesterase otubain-like [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-22
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1


Query: 1  MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 57
          MQNQEN+DADGK ESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQENLDADGKAESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 56

[Close]

BLAST of Cla012775 vs. NCBI nr
Match: gi|659108333|ref|XP_008454143.1| (PREDICTED: ubiquitin thioesterase otubain-like [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-21
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 1  MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 57
          MQNQ+N+D DGK ESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK
Sbjct: 1  MQNQDNLDTDGKAESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 56

[Close]

BLAST of Cla012775 vs. NCBI nr
Match: gi|657956293|ref|XP_008369628.1| (PREDICTED: ubiquitin thioesterase otubain-like [Malus domestica])

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-12
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 1  MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 57
          MQNQ+ V  DG+VES  S+ T E+D W N GD DIMLQ SAI  +EAEK+PFVGDK
Sbjct: 1  MQNQDGVQVDGEVESAASVATPEFDEWANFGDQDIMLQHSAIRAEEAEKIPFVGDK 56

[Close]

BLAST of Cla012775 vs. NCBI nr
Match: gi|645231113|ref|XP_008222244.1| (PREDICTED: ubiquitin thioesterase otubain-like [Prunus mume])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 1  MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 57
          MQNQ+ V  DG+VES  S+ T E+D W N GD DIM Q SAI  +EAEK+PF+GDK
Sbjct: 1  MQNQDGVQVDGEVESATSVPTPEFDEWANFGDQDIMQQHSAIRAEEAEKIPFLGDK 56

[Close]

BLAST of Cla012775 vs. NCBI nr
Match: gi|596182099|ref|XP_007223296.1| (hypothetical protein PRUPE_ppa007269mg [Prunus persica])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 1   MQNQENVDADGKVESVISIQTSEYDSWGNLGDDDIMLQKSAIFVQEAEKVPFVGDK 57
           MQNQ+ V  DG+VES  S+ T E+D W N GD DIM Q SAI  +EAEK+PF+GDK
Sbjct: 74  MQNQDGVQVDGEVESATSVPTPEFDEWANFGDQDIMQQHSAIRAEEAEKIPFLGDK 129

The following BLAST results are available for this feature:

BLAST of Cla012775 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX37_CUCSA	2.4e-22	96.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007720 PE=4 SV=1	[more]
M5XZ09_PRUPE	1.5e-11	60.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007269mg PE=4 SV=1	[more]
A0A061E5K2_THECC	7.2e-11	58.33	Otubain, Ubiquitin thioesterase Otubain, Peptidase C65, otubain isoform 1 OS=The...	[more]
A0A061EBG4_THECC	7.2e-11	58.33	Ubiquitin thioesterase otubain-like isoform 8 OS=Theobroma cacao GN=TCM_008341 P...	[more]
A0A0D2RIG9_GOSRA	6.1e-10	58.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G197000 PE=4 SV=1	[more]

BLAST of Cla012775 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468900\|ref\|XP_004152159.1\|	3.4e-22	96.43	PREDICTED: ubiquitin thioesterase otubain-like [Cucumis sativus]	[more]
gi\|659108333\|ref\|XP_008454143.1\|	2.2e-21	92.86	PREDICTED: ubiquitin thioesterase otubain-like [Cucumis melo]	[more]
gi\|657956293\|ref\|XP_008369628.1\|	1.9e-12	64.29	PREDICTED: ubiquitin thioesterase otubain-like [Malus domestica]	[more]
gi\|645231113\|ref\|XP_008222244.1\|	2.1e-11	60.71	PREDICTED: ubiquitin thioesterase otubain-like [Prunus mume]	[more]
gi\|596182099\|ref\|XP_007223296.1\|	2.1e-11	60.71	hypothetical protein PRUPE_ppa007269mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0071108	protein K48-linked deubiquitination
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0019784	NEDD8-specific protease activity
molecular_function	GO:0004843	thiol-dependent ubiquitin-specific protease activity
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012775	Cla012775.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012775	Cla97C07G138650	Watermelon (97103) v2	wmwmbB173
Cla012775	Csa4G007720	Cucumber (Chinese Long) v2	cuwmB304
Cla012775	MELO3C017814	Melon (DHL92) v3.5.1	mewmB514
Cla012775	ClCG07G011910	Watermelon (Charleston Gray)	wcgwmB371
Cla012775	CSPI04G02320	Wild cucumber (PI 183967)	cpiwmB307
Cla012775	Cucsa.095700	Cucumber (Gy14) v1	cgywmB119
Cla012775	CmaCh14G013970	Cucurbita maxima (Rimu)	cmawmB232
Cla012775	CmaCh06G017140	Cucurbita maxima (Rimu)	cmawmB797
Cla012775	CmoCh14G014330	Cucurbita moschata (Rifu)	cmowmB218
Cla012775	CmoCh06G017050	Cucurbita moschata (Rifu)	cmowmB792
Cla012775	Lsi07G003890	Bottle gourd (USVL1VR-Ls)	lsiwmB438
Cla012775	Cp4.1LG03g13380	Cucurbita pepo (Zucchini)	cpewmB600
Cla012775	Cp4.1LG08g06450	Cucurbita pepo (Zucchini)	cpewmB839
Cla012775	CsGy4G002270	Cucumber (Gy14) v2	cgybwmB282
Cla012775	MELO3C017814.2	Melon (DHL92) v3.6.1	medwmB500
Cla012775	Carg06550	Silver-seed gourd	carwmB0120
Cla012775	Carg15424	Silver-seed gourd	carwmB0689
Cla012775	CsaV3_4G002250	Cucumber (Chinese Long) v3	cucwmB316
Cla012775	Bhi01G002848	Wax gourd	wgowmB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None