Cla012507 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012507
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	MADS box transcription factor (AHRD V1 ***- B2KJ31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box
Location	Chr8 : 212501 .. 215874 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCAATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGGTATATTTTTCATTACCTCCCATACAATTTCTAATTTTCTTTTTTATATTTTATTTTATTAATTGAGTAATACATACTTGGAGGAAAGTCTATTCATGATATGATATACTCTGTTGTTGATAGACTCACACAACTAGATTTCAATTTTGCTATATCTACCAACTCTTTTGCATTGTGTTATATCTACGTACTGAATTTTACATGTCGATCTATGGGTAAGTAAAGATATGTATTACTCTTCTTAAAATGAAAGTGGTTGGATTGATTATGTATATCACATTTGACATAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTTGGTGGTGTATAGAATATATGTATATATTCTTCTTGAGTATTGGTTTGATTTTTGTGTCTCATTCCATGTTGGAGGATATAGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGTACACTCTCTCTCCTTTTTCTTATTTTAATTTGATATGACAAAAGGGTCAATTGTTTTCTCTATGGATAACAACCATATATTCCTAATGAAATCAAATTTACATTCCCACTATAATTCCTTTTAAATTGTTAAGTTAAAATAGAGAATACAAAGAAAAGAAAGGCGTCTCCCAAACAAAAAGTCCTTAGTTTTTTAAGTGAATTTTGTTTACAAGTGATATGCTGAATCTGATGCTACTTCTATATATATATATATAATATATATATGTTTACAAAATTTTAAAACTAAACAAAGAACGGCTTTAAAAATAAGAAAACAAATATAATCCTGTTTTTTATTTCTTTTCTGATTTTCATTTTCTTTTAAAGACAAGAAAGCAAAAACCATACATTTTTATTGTTGTTTTAAGTTTTGTGTTTTTAGAAAGCAACGGAGTATTATAAACATATAACTATTTCTTTTTTTTTTTTTTCTTTTTTTTTTAATCTTTTTGAAGTTAGAAAGTCAAAGAGATACGTTAGAAGGGTAAAAAAATATGTGAAGATATGAAAATAAAAACTTCATAAAAGATAATTTTATTTAAGGCAAAGTTAAAAAGAGTAGATTTGAAAAGATTAAAAAACTATATTTAGACCTGATAATTAATTTCTTTTTTATTTTAAAAATTTGGACTTGTTTTCTTACATCATATTTTATAATGGTTTGCATCTTTCATAAAAATAACTTTTTTAGGTATCATTTATGAAAATTGTGCTTTTTTTTTTTTTTTCATAATTCTTAATCATTATTTGATCTTTCATATGTAAATATTTTAATTCTTAGTTAAATTTCAAAAATAAAGATAAATTTCTTATATATAGAGAAGAAAATAGAAAGACCCAAATAGGTACAAGGGGTGTTTTTCAAAACTTGGCCTATTTGGAAATACTCATAAAATAATTATTATATTGTTTATAAATTCATTTTTAAAATCCAAATAATTATTGTCGGGAACTTAGTATTTTGTATTTGTTTTTTTTAATGAACAGAAAATATATTTCCATACCTGTTTTTGGTTTTATCTAGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGTAAGACATAATTATTATTTTCTATTTCCAACTTATTTCCAACTTTGGTGTGTATATATATATGGGTTATTACTATTGTATTTATAGATATATTAGCTTGGCTAATGTTTCTAGTCCAACACAAGTCGTGTATTTAGCCACTCTAACACTTGTTGTTGGATGATATATATCTTATATTTAATGACACAATAAATATGGGTCAAATATTTATTAGACATGTATACAAACATTATTTAAGTACAATCAATATGCCATATGTTCGTATTCGTGTAATACAAACACGACTCTAATATTTTGGAAGTTAATTGAAAAAATAATGTATATGTAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGGTATATTTCCAAAAGAAAAAATAACTTTGTTTTGTTCACTATATGACTATTTTGAATGTGTGTGTGTTGCTACATGCAATGAAATTAATTGACCTCCATATCATGTAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGTTGGACTCTTTCTTTTCTTTTTCTTTTCTTTTTTTTTTTTAATTTTTCTTTCTTTCTTTTTATTATTAATTTATATTTTTAATCTCTCAAATATATATAAGATAAAATTTATCTTATGTCAAAGTTTATGAAATTTCAAAAAATAGGTATAAACGGTCATTTTCAGTACTAGTTTCCTCTTACATATAGGTGCTCTTATAGTTGTTTGAAATTATCTTAGATAACAAAACTGTTGAAATTTTTTTATAATTAATAGCAAAATATACCGTCTATCTGCGATAAATCGTGATAGACTACTATCTATGTCTATCTATCGCAGAAAGGTAGTGAAATTTTGCTATATTTGTAAATATTTTGTTCCTTTTACTATATTTGAAAAGAGTCCAATATTTATTATATTGACTGAACGACCAATGTATTCTAAAATTTAGATGTTTTGAGTCAATTCCACATGAACTCTTTGAGAAATCAATTTCATGTTTTTTGGGATAAGCTATTGTGGAAAGAGGAAAAAAATCGAGCATAGCTCAGCGTGTAATGACTAATTACCATCTAAAAATTCGATTATTTTGATTTCTACTCCGAAATGGTTAAAGAACATTTTATATTCTTAGTCTTATATTATATGTTTTTTTTTAAAAAAATAATTATTAATAAAATCTAAATTTTCTTTCTGTTTGAAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGGTAAGTAGAGTATGTTATGGTTGAAAGGTTAAGAATCTCTAATTGGAAAAATCAAATTTAATTAATTTTTTTTTTCTTTTTTTAGAGAATAAAACATTAATTCTGTCCCTTCTCTATTGTGGTTTTGCAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA

mRNA sequence

ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCAATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA

Coding sequence (CDS)

ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCAATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA

Protein sequence

MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISNTTNIEPVNITNCQYPLTIQDELFQLCT

Homology

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BLAST of Cla012507 vs. Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-55
Identity = 118/212 (55.66%), Postives = 149/212 (70.28%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGK+Q+KRIENPVHRQVTFCKRR GLLKKAKELSVLC+A+IGV IFS  GKL+ELATK
Sbjct: 1   MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATK 60

Query: 61  GTMQGLIERYMKHTNGNQ-------PPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNAL 120
           GTM+G+I++YMK T G +            +    L+ KDE+  LKQEIE+L KG+    
Sbjct: 61  GTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMF 120

Query: 121 GGGGSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDK 180
           GGG  +G M L+EL + EK LE WI Q+R+ KM  M +EI++LRN+E +LK  NKYL +K
Sbjct: 121 GGG--DGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEK 180

Query: 181 MDENISNTTNIE-PVNITNCQYPLTIQDELFQ 204
           ++EN ++  +    V  TN  YPLT+  E+FQ
Sbjct: 181 IEENNNSILDANFAVMETNYSYPLTMPSEIFQ 210

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BLAST of Cla012507 vs. Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 7.4e-48
Identity = 103/205 (50.24%), Postives = 136/205 (66.34%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           M RGKVQM+RIENPVHRQVTFCKRR GLLKKA+ELSVLC+A +GV IFS+ GKL+ELAT 
Sbjct: 1   MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATN 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           G M  L+ERY  +  G Q     +  Q +  +  +  L++EI++L +GLR+  GGG  E 
Sbjct: 61  GNMHNLVERYQSNVAGGQMEPGALQRQQV-AEQGIFLLREEIDLLQRGLRSTYGGGAGE- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MTLD+L   EK LE+WI Q+RTTKM+ M +EI+ LRN+E ILK AN+ L +K+ E    
Sbjct: 121 -MTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKEQQKL 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQL 205
             ++  ++      P+T  +  F +
Sbjct: 181 YMSLLDLHSQQPTQPMTYGNRFFSI 202

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BLAST of Cla012507 vs. Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 1.8e-46
Identity = 102/176 (57.95%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ++RIENPVHRQVTFCKRRAGLLKKA+ELS+LC A IG+ IFSAHGKLY+LAT 
Sbjct: 1   MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATT 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTM+ LIERY K  +G Q        Q ++ K E + LKQEI +L KGLR   G   +E 
Sbjct: 61  GTMEELIERY-KSASGEQA--NACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEH 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 176
            MT++EL+  E+ LEIW+  +R+ KM+ M +EI+AL+++E +LKAAN+ L +K+ E
Sbjct: 121 -MTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172

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BLAST of Cla012507 vs. Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.8e-46
Identity = 102/176 (57.95%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ++RIENPVHRQVTFCKRRAGLLKKA+ELS+LC A IG+ IFSAHGKLY+LAT 
Sbjct: 1   MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATT 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTM+ LIERY K  +G Q        Q ++ K E + LKQEI +L KGLR   G   +E 
Sbjct: 61  GTMEELIERY-KSASGEQA--NACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEH 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 176
            MT++EL+  E+ LEIW+  +R+ KM+ M +EI+AL+++E +LKAAN+ L +K+ E
Sbjct: 121 -MTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172

[Close]

BLAST of Cla012507 vs. Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-29
Identity = 76/172 (44.19%), Postives = 101/172 (58.72%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           M RGK QMKRIEN   RQVTF KRR GLLKKA ELSVLC+A++ + IFS  GKLYE A+ 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFAS- 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGI 120
             MQ  I+RY++HT       P  +     +K E   + ++IE L+  +  L G G  G 
Sbjct: 61  SNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGI-GT 120

Query: 121 MTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDK 173
            +++EL   E+QLE  +  +R  K +   E+IE L+ +E  L A N+ L +K
Sbjct: 121 CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170

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BLAST of Cla012507 vs. TrEMBL
Match: A0A0A0KW77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650620 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.4e-106
Identity = 193/207 (93.24%), Postives = 202/207 (97.58%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGI 120
           GTMQGLIERYMKHTNGNQPPDPPI HQTLEVK+E+IRLKQEIEVLKGLRNALGGGG EGI
Sbjct: 61  GTMQGLIERYMKHTNGNQPPDPPIHHQTLEVKEEIIRLKQEIEVLKGLRNALGGGGGEGI 120

Query: 121 MTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMD-ENISN 180
           MTLDELD+FEKQLEIWICQVR+TKMKFMCEEIEALRNQE IL AANKYLHDKM+ ENISN
Sbjct: 121 MTLDELDIFEKQLEIWICQVRSTKMKFMCEEIEALRNQEFILTAANKYLHDKMEAENISN 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQLCT 207
           TTN+EPVNITNCQYPLTIQDELFQLCT
Sbjct: 181 TTNMEPVNITNCQYPLTIQDELFQLCT 207

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BLAST of Cla012507 vs. TrEMBL
Match: B9SKA4_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1030190 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.1e-65
Identity = 140/208 (67.31%), Postives = 167/208 (80.29%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRR+GLLKKAKELSVLC+A+IG+FIFSAHGKLY+LATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLATK 60

Query: 61  GTMQGLIERYMKHTNGN--QPPDPPID--HQTLEVKDEVIRLKQEIEVL-KGLRNALGGG 120
           GTM GLIERYM  T GN  Q  D   +   Q L+ K+E+  LKQEIE+L KGLR+ LGGG
Sbjct: 61  GTMSGLIERYMNATGGNSLQAEDKAKETMQQPLDAKEEISMLKQEIEILQKGLRHLLGGG 120

Query: 121 GSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 180
            +E  MTLDEL + EK LEIWI  +R+TKM+ M +EI+ LRN+E ILKAAN+YL DK++E
Sbjct: 121 AAE--MTLDELLILEKNLEIWIYHIRSTKMEIMAKEIQLLRNKEGILKAANQYLQDKIEE 180

Query: 181 NISNTTNIEPVNITNCQYPLTIQDELFQ 204
           N+ + TN  P+  TN  YPLTIQ+E+FQ
Sbjct: 181 NV-DITNFAPMT-TNFPYPLTIQNEIFQ 204

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BLAST of Cla012507 vs. TrEMBL
Match: I1LNS4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G005000 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.9e-64
Identity = 132/205 (64.39%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTMQGLIERYMK + G QP   P  H  L+ K+E   LKQEI+ L KG+R+  GGG    
Sbjct: 61  GTMQGLIERYMKFSRGAQPEAAPEAHPLLDAKEETNMLKQEIQTLQKGIRHLFGGGNK-- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MT+DEL + EK LE WI  +R+ KM  M +EI+AL+++E  LKAANKYLHDK+ EN + 
Sbjct: 121 TMTIDELQVLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAI 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQL 205
           +   +    T+  YPL IQDE+FQL
Sbjct: 181 SNFAQFATDTSNSYPLIIQDEVFQL 203

[Close]

BLAST of Cla012507 vs. TrEMBL
Match: A0A0B2RDD5_GLYSO (Agamous-like MADS-box protein AGL12 OS=Glycine soja GN=glysoja_026335 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.9e-64
Identity = 132/205 (64.39%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTMQGLIERYMK + G QP   P  H  L+ K+E   LKQEI+ L KG+R+  GGG    
Sbjct: 61  GTMQGLIERYMKFSRGAQPEAAPEAHPLLDAKEETNMLKQEIQTLQKGIRHLFGGGNK-- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MT+DEL + EK LE WI  +R+ KM  M +EI+AL+++E  LKAANKYLHDK+ EN + 
Sbjct: 121 TMTIDELQVLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAI 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQL 205
           +   +    T+  YPL IQDE+FQL
Sbjct: 181 SNFAQFATDTSNSYPLIIQDEVFQL 203

[Close]

BLAST of Cla012507 vs. TrEMBL
Match: B2KJ31_POPTO (MADS box transcription factor OS=Populus tomentosa GN=MADS2 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-63
Identity = 137/205 (66.83%), Postives = 162/205 (79.02%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQM+RIEN VHRQVTFCKRR+GLLKKAKELSVLC+A+IGVFIFSAHGKLYELATK
Sbjct: 1   MARGKVQMRRIENSVHRQVTFCKRRSGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQ-TLEVKDEVIRLKQEIEVL-KGLRNALGGGGSE 120
           G MQGLIERYMK + G QP    I+ Q  ++  +E+ +LKQEIE+L KGLR   GG  +E
Sbjct: 61  GNMQGLIERYMKSSRGTQPEPATIETQPDMDANEEINKLKQEIEILQKGLRFMFGGCAAE 120

Query: 121 GIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENIS 180
             MTLDEL   EK LEIWI ++R+TK+  M +EIE LRN+E ILKAAN+YL DK++ENI 
Sbjct: 121 --MTLDELIGLEKHLEIWIYKIRSTKVDIMFKEIEQLRNKEGILKAANQYLQDKVEENIM 180

Query: 181 NTTNIEPVNITNCQYPLTIQDELFQ 204
             TN  P+  TN  YPLTIQ+E+FQ
Sbjct: 181 -ITNFAPIT-TNIPYPLTIQNEIFQ 201

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|778708029|ref|XP_011656111.1| (PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 2.0e-106
Identity = 193/207 (93.24%), Postives = 202/207 (97.58%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGI 120
           GTMQGLIERYMKHTNGNQPPDPPI HQTLEVK+E+IRLKQEIEVLKGLRNALGGGG EGI
Sbjct: 61  GTMQGLIERYMKHTNGNQPPDPPIHHQTLEVKEEIIRLKQEIEVLKGLRNALGGGGGEGI 120

Query: 121 MTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMD-ENISN 180
           MTLDELD+FEKQLEIWICQVR+TKMKFMCEEIEALRNQE IL AANKYLHDKM+ ENISN
Sbjct: 121 MTLDELDIFEKQLEIWICQVRSTKMKFMCEEIEALRNQEFILTAANKYLHDKMEAENISN 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQLCT 207
           TTN+EPVNITNCQYPLTIQDELFQLCT
Sbjct: 181 TTNMEPVNITNCQYPLTIQDELFQLCT 207

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|659119561|ref|XP_008459723.1| (PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 8.9e-78
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGI 120
           GTMQGLIERYMKHTNGNQPPDPPI HQT E K+E+IRLKQEIEVLKGLRNALGGGG EGI
Sbjct: 61  GTMQGLIERYMKHTNGNQPPDPPIHHQTSEAKEEIIRLKQEIEVLKGLRNALGGGGGEGI 120

Query: 121 MTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQ 159
           M LDELDMFEKQLEIWICQVR+TKMKFM EEIEALRNQ
Sbjct: 121 MRLDELDMFEKQLEIWICQVRSTKMKFMSEEIEALRNQ 158

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|255570943|ref|XP_002526423.1| (PREDICTED: agamous-like MADS-box protein AGL12 [Ricinus communis])

HSP 1 Score: 256.9 bits (655), Expect = 3.0e-65
Identity = 140/208 (67.31%), Postives = 167/208 (80.29%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRR+GLLKKAKELSVLC+A+IG+FIFSAHGKLY+LATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLATK 60

Query: 61  GTMQGLIERYMKHTNGN--QPPDPPID--HQTLEVKDEVIRLKQEIEVL-KGLRNALGGG 120
           GTM GLIERYM  T GN  Q  D   +   Q L+ K+E+  LKQEIE+L KGLR+ LGGG
Sbjct: 61  GTMSGLIERYMNATGGNSLQAEDKAKETMQQPLDAKEEISMLKQEIEILQKGLRHLLGGG 120

Query: 121 GSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 180
            +E  MTLDEL + EK LEIWI  +R+TKM+ M +EI+ LRN+E ILKAAN+YL DK++E
Sbjct: 121 AAE--MTLDELLILEKNLEIWIYHIRSTKMEIMAKEIQLLRNKEGILKAANQYLQDKIEE 180

Query: 181 NISNTTNIEPVNITNCQYPLTIQDELFQ 204
           N+ + TN  P+  TN  YPLTIQ+E+FQ
Sbjct: 181 NV-DITNFAPMT-TNFPYPLTIQNEIFQ 204

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|802540604|ref|XP_012077413.1| (PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas])

HSP 1 Score: 255.4 bits (651), Expect = 8.7e-65
Identity = 136/204 (66.67%), Postives = 163/204 (79.90%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRR+GLLKKAKELSVLC+A+IG+ IFSAHGKLYELATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGILIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTMQGLIERYMK T G+   +   + + L+  +E+  LKQEI +L KGLR+ LGGG +E 
Sbjct: 61  GTMQGLIERYMKPTGGSVQNEQAKETEPLDAIEEINMLKQEINILQKGLRHILGGGAAE- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MT+DEL + EK LEIWIC VR+TKM  M +EI+ L+N+E ILKAAN+YL DK++ENI  
Sbjct: 121 -MTMDELLILEKNLEIWICHVRSTKMDLMSKEIQLLKNKEGILKAANQYLQDKIEENI-E 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQ 204
            TN   +  TN  YPLTIQ+E+FQ
Sbjct: 181 ITNFASMT-TNIPYPLTIQNEIFQ 200

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|571491267|ref|XP_006591861.1| (PREDICTED: uncharacterized protein LOC100783345 isoform X1 [Glycine max])

HSP 1 Score: 252.7 bits (644), Expect = 5.6e-64
Identity = 132/205 (64.39%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTMQGLIERYMK + G QP   P  H  L+ K+E   LKQEI+ L KG+R+  GGG    
Sbjct: 61  GTMQGLIERYMKFSRGAQPEAAPEAHPLLDAKEETNMLKQEIQTLQKGIRHLFGGGNK-- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MT+DEL + EK LE WI  +R+ KM  M +EI+AL+++E  LKAANKYLHDK+ EN + 
Sbjct: 121 TMTIDELQVLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAI 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQL 205
           +   +    T+  YPL IQDE+FQL
Sbjct: 181 SNFAQFATDTSNSYPLIIQDEVFQL 203

The following BLAST results are available for this feature:

BLAST of Cla012507 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL12_ARATH	2.1e-55	55.66	Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2	[more]
MAD33_ORYSJ	7.4e-48	50.24	MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 ...	[more]
MAD26_ORYSI	1.8e-46	57.95	MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV...	[more]
MAD26_ORYSJ	1.8e-46	57.95	MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 ...	[more]
SOC1_ARATH	2.0e-29	44.19	MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1	[more]

BLAST of Cla012507 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW77_CUCSA	1.4e-106	93.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650620 PE=4 SV=1	[more]
B9SKA4_RICCO	2.1e-65	67.31	Mads box protein, putative OS=Ricinus communis GN=RCOM_1030190 PE=4 SV=1	[more]
I1LNS4_SOYBN	3.9e-64	64.39	Uncharacterized protein OS=Glycine max GN=GLYMA_12G005000 PE=4 SV=1	[more]
A0A0B2RDD5_GLYSO	3.9e-64	64.39	Agamous-like MADS-box protein AGL12 OS=Glycine soja GN=glysoja_026335 PE=4 SV=1	[more]
B2KJ31_POPTO	1.5e-63	66.83	MADS box transcription factor OS=Populus tomentosa GN=MADS2 PE=2 SV=1	[more]

BLAST of Cla012507 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708029\|ref\|XP_011656111.1\|	2.0e-106	93.24	PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis sativus]	[more]
gi\|659119561\|ref\|XP_008459723.1\|	8.9e-78	92.41	PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis melo]	[more]
gi\|255570943\|ref\|XP_002526423.1\|	3.0e-65	67.31	PREDICTED: agamous-like MADS-box protein AGL12 [Ricinus communis]	[more]
gi\|802540604\|ref\|XP_012077413.1\|	8.7e-65	66.67	PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas]	[more]
gi\|571491267\|ref\|XP_006591861.1\|	5.6e-64	64.39	PREDICTED: uncharacterized protein LOC100783345 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0048765	root hair cell differentiation
biological_process	GO:0010167	response to nitrate
biological_process	GO:0048481	plant ovule development
biological_process	GO:0015706	nitrate transport
biological_process	GO:0048527	lateral root development
biological_process	GO:0006826	iron ion transport
biological_process	GO:0048589	developmental growth
biological_process	GO:0010106	cellular response to iron ion starvation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0048364	root development
biological_process	GO:0050896	response to stimulus
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0048569	post-embryonic animal organ development
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0008134	transcription factor binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU69229	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012507	Cla012507.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU69229	WMU69229	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 1.9E-25coord: 38..59 score: 1.9E-25coord: 3..23 score: 1.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..56 score: 6.8
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 2.0
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 28
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 1..76 score: 3.01
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 87..173 score: 9.3
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 88..179 score: 10
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..194 score: 2.8
None	No IPR available	PANTHER	PTHR11945:SF152	AGAMOUS-LIKE MADS-BOX PROTEIN AGL12	coord: 2..194 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012507	Csa5G650620	Cucumber (Chinese Long) v2	cuwmB379
Cla012507	MELO3C022205	Melon (DHL92) v3.5.1	mewmB009
Cla012507	ClCG08G000470	Watermelon (Charleston Gray)	wcgwmB401
Cla012507	CSPI05G31260	Wild cucumber (PI 183967)	cpiwmB385
Cla012507	Cucsa.061750	Cucumber (Gy14) v1	cgywmB052
Cla012507	CmaCh09G012390	Cucurbita maxima (Rimu)	cmawmB015
Cla012507	CmoCh09G013050	Cucurbita moschata (Rifu)	cmowmB011
Cla012507	Lsi08G000400	Bottle gourd (USVL1VR-Ls)	lsiwmB467
Cla012507	Cp4.1LG06g10070	Cucurbita pepo (Zucchini)	cpewmB759
Cla012507	MELO3C022205.2	Melon (DHL92) v3.6.1	medwmB007
Cla012507	Carg27640	Silver-seed gourd	carwmB0347
Cla012507	CsaV3_5G040310	Cucumber (Chinese Long) v3	cucwmB402
Cla012507	Bhi06G000203	Wax gourd	wgowmB125

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012507	Cucumber (Gy14) v1	cgywmB445
Cla012507	Cucurbita maxima (Rimu)	cmawmB417
Cla012507	Cucurbita maxima (Rimu)	cmawmB418
Cla012507	Cucurbita moschata (Rifu)	cmowmB411
Cla012507	Cucurbita moschata (Rifu)	cmowmB412
Cla012507	Cucurbita pepo (Zucchini)	cpewmB544
Cla012507	Cucumber (Gy14) v2	cgybwmB351
Cla012507	Watermelon (97103) v2	wmwmbB101