Cla012507.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012507
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	MADS box transcription factor (AHRD V1 ***- B2KJ31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box
Location	Chr8 : 212501 .. 215874 (-)
Sequence length	621

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCAATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGGTATATTTTTCATTACCTCCCATACAATTTCTAATTTTCTTTTTTATATTTTATTTTATTAATTGAGTAATACATACTTGGAGGAAAGTCTATTCATGATATGATATACTCTGTTGTTGATAGACTCACACAACTAGATTTCAATTTTGCTATATCTACCAACTCTTTTGCATTGTGTTATATCTACGTACTGAATTTTACATGTCGATCTATGGGTAAGTAAAGATATGTATTACTCTTCTTAAAATGAAAGTGGTTGGATTGATTATGTATATCACATTTGACATAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTTGGTGGTGTATAGAATATATGTATATATTCTTCTTGAGTATTGGTTTGATTTTTGTGTCTCATTCCATGTTGGAGGATATAGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGTACACTCTCTCTCCTTTTTCTTATTTTAATTTGATATGACAAAAGGGTCAATTGTTTTCTCTATGGATAACAACCATATATTCCTAATGAAATCAAATTTACATTCCCACTATAATTCCTTTTAAATTGTTAAGTTAAAATAGAGAATACAAAGAAAAGAAAGGCGTCTCCCAAACAAAAAGTCCTTAGTTTTTTAAGTGAATTTTGTTTACAAGTGATATGCTGAATCTGATGCTACTTCTATATATATATATATAATATATATATGTTTACAAAATTTTAAAACTAAACAAAGAACGGCTTTAAAAATAAGAAAACAAATATAATCCTGTTTTTTATTTCTTTTCTGATTTTCATTTTCTTTTAAAGACAAGAAAGCAAAAACCATACATTTTTATTGTTGTTTTAAGTTTTGTGTTTTTAGAAAGCAACGGAGTATTATAAACATATAACTATTTCTTTTTTTTTTTTTTCTTTTTTTTTTAATCTTTTTGAAGTTAGAAAGTCAAAGAGATACGTTAGAAGGGTAAAAAAATATGTGAAGATATGAAAATAAAAACTTCATAAAAGATAATTTTATTTAAGGCAAAGTTAAAAAGAGTAGATTTGAAAAGATTAAAAAACTATATTTAGACCTGATAATTAATTTCTTTTTTATTTTAAAAATTTGGACTTGTTTTCTTACATCATATTTTATAATGGTTTGCATCTTTCATAAAAATAACTTTTTTAGGTATCATTTATGAAAATTGTGCTTTTTTTTTTTTTTTCATAATTCTTAATCATTATTTGATCTTTCATATGTAAATATTTTAATTCTTAGTTAAATTTCAAAAATAAAGATAAATTTCTTATATATAGAGAAGAAAATAGAAAGACCCAAATAGGTACAAGGGGTGTTTTTCAAAACTTGGCCTATTTGGAAATACTCATAAAATAATTATTATATTGTTTATAAATTCATTTTTAAAATCCAAATAATTATTGTCGGGAACTTAGTATTTTGTATTTGTTTTTTTTAATGAACAGAAAATATATTTCCATACCTGTTTTTGGTTTTATCTAGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGTAAGACATAATTATTATTTTCTATTTCCAACTTATTTCCAACTTTGGTGTGTATATATATATGGGTTATTACTATTGTATTTATAGATATATTAGCTTGGCTAATGTTTCTAGTCCAACACAAGTCGTGTATTTAGCCACTCTAACACTTGTTGTTGGATGATATATATCTTATATTTAATGACACAATAAATATGGGTCAAATATTTATTAGACATGTATACAAACATTATTTAAGTACAATCAATATGCCATATGTTCGTATTCGTGTAATACAAACACGACTCTAATATTTTGGAAGTTAATTGAAAAAATAATGTATATGTAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGGTATATTTCCAAAAGAAAAAATAACTTTGTTTTGTTCACTATATGACTATTTTGAATGTGTGTGTGTTGCTACATGCAATGAAATTAATTGACCTCCATATCATGTAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGTTGGACTCTTTCTTTTCTTTTTCTTTTCTTTTTTTTTTTTAATTTTTCTTTCTTTCTTTTTATTATTAATTTATATTTTTAATCTCTCAAATATATATAAGATAAAATTTATCTTATGTCAAAGTTTATGAAATTTCAAAAAATAGGTATAAACGGTCATTTTCAGTACTAGTTTCCTCTTACATATAGGTGCTCTTATAGTTGTTTGAAATTATCTTAGATAACAAAACTGTTGAAATTTTTTTATAATTAATAGCAAAATATACCGTCTATCTGCGATAAATCGTGATAGACTACTATCTATGTCTATCTATCGCAGAAAGGTAGTGAAATTTTGCTATATTTGTAAATATTTTGTTCCTTTTACTATATTTGAAAAGAGTCCAATATTTATTATATTGACTGAACGACCAATGTATTCTAAAATTTAGATGTTTTGAGTCAATTCCACATGAACTCTTTGAGAAATCAATTTCATGTTTTTTGGGATAAGCTATTGTGGAAAGAGGAAAAAAATCGAGCATAGCTCAGCGTGTAATGACTAATTACCATCTAAAAATTCGATTATTTTGATTTCTACTCCGAAATGGTTAAAGAACATTTTATATTCTTAGTCTTATATTATATGTTTTTTTTTAAAAAAATAATTATTAATAAAATCTAAATTTTCTTTCTGTTTGAAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGGTAAGTAGAGTATGTTATGGTTGAAAGGTTAAGAATCTCTAATTGGAAAAATCAAATTTAATTAATTTTTTTTTTCTTTTTTTAGAGAATAAAACATTAATTCTGTCCCTTCTCTATTGTGGTTTTGCAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA

mRNA sequence

ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCAATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA

Coding sequence (CDS)

ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCAATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA

Protein sequence

MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISNTTNIEPVNITNCQYPLTIQDELFQLCT

Homology

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BLAST of Cla012507 vs. Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-55
Identity = 118/212 (55.66%), Postives = 149/212 (70.28%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGK+Q+KRIENPVHRQVTFCKRR GLLKKAKELSVLC+A+IGV IFS  GKL+ELATK
Sbjct: 1   MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATK 60

Query: 61  GTMQGLIERYMKHTNGNQ-------PPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNAL 120
           GTM+G+I++YMK T G +            +    L+ KDE+  LKQEIE+L KG+    
Sbjct: 61  GTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMF 120

Query: 121 GGGGSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDK 180
           GGG  +G M L+EL + EK LE WI Q+R+ KM  M +EI++LRN+E +LK  NKYL +K
Sbjct: 121 GGG--DGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEK 180

Query: 181 MDENISNTTNIE-PVNITNCQYPLTIQDELFQ 204
           ++EN ++  +    V  TN  YPLT+  E+FQ
Sbjct: 181 IEENNNSILDANFAVMETNYSYPLTMPSEIFQ 210

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BLAST of Cla012507 vs. Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 7.4e-48
Identity = 103/205 (50.24%), Postives = 136/205 (66.34%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           M RGKVQM+RIENPVHRQVTFCKRR GLLKKA+ELSVLC+A +GV IFS+ GKL+ELAT 
Sbjct: 1   MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATN 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           G M  L+ERY  +  G Q     +  Q +  +  +  L++EI++L +GLR+  GGG  E 
Sbjct: 61  GNMHNLVERYQSNVAGGQMEPGALQRQQV-AEQGIFLLREEIDLLQRGLRSTYGGGAGE- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MTLD+L   EK LE+WI Q+RTTKM+ M +EI+ LRN+E ILK AN+ L +K+ E    
Sbjct: 121 -MTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKEQQKL 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQL 205
             ++  ++      P+T  +  F +
Sbjct: 181 YMSLLDLHSQQPTQPMTYGNRFFSI 202

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BLAST of Cla012507 vs. Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 1.8e-46
Identity = 102/176 (57.95%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ++RIENPVHRQVTFCKRRAGLLKKA+ELS+LC A IG+ IFSAHGKLY+LAT 
Sbjct: 1   MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATT 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTM+ LIERY K  +G Q        Q ++ K E + LKQEI +L KGLR   G   +E 
Sbjct: 61  GTMEELIERY-KSASGEQA--NACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEH 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 176
            MT++EL+  E+ LEIW+  +R+ KM+ M +EI+AL+++E +LKAAN+ L +K+ E
Sbjct: 121 -MTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172

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BLAST of Cla012507 vs. Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.8e-46
Identity = 102/176 (57.95%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ++RIENPVHRQVTFCKRRAGLLKKA+ELS+LC A IG+ IFSAHGKLY+LAT 
Sbjct: 1   MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATT 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTM+ LIERY K  +G Q        Q ++ K E + LKQEI +L KGLR   G   +E 
Sbjct: 61  GTMEELIERY-KSASGEQA--NACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEH 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 176
            MT++EL+  E+ LEIW+  +R+ KM+ M +EI+AL+++E +LKAAN+ L +K+ E
Sbjct: 121 -MTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172

[Close]

BLAST of Cla012507 vs. Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-29
Identity = 76/172 (44.19%), Postives = 101/172 (58.72%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           M RGK QMKRIEN   RQVTF KRR GLLKKA ELSVLC+A++ + IFS  GKLYE A+ 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFAS- 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGI 120
             MQ  I+RY++HT       P  +     +K E   + ++IE L+  +  L G G  G 
Sbjct: 61  SNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGI-GT 120

Query: 121 MTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDK 173
            +++EL   E+QLE  +  +R  K +   E+IE L+ +E  L A N+ L +K
Sbjct: 121 CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170

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BLAST of Cla012507 vs. TrEMBL
Match: A0A0A0KW77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650620 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.4e-106
Identity = 193/207 (93.24%), Postives = 202/207 (97.58%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGI 120
           GTMQGLIERYMKHTNGNQPPDPPI HQTLEVK+E+IRLKQEIEVLKGLRNALGGGG EGI
Sbjct: 61  GTMQGLIERYMKHTNGNQPPDPPIHHQTLEVKEEIIRLKQEIEVLKGLRNALGGGGGEGI 120

Query: 121 MTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMD-ENISN 180
           MTLDELD+FEKQLEIWICQVR+TKMKFMCEEIEALRNQE IL AANKYLHDKM+ ENISN
Sbjct: 121 MTLDELDIFEKQLEIWICQVRSTKMKFMCEEIEALRNQEFILTAANKYLHDKMEAENISN 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQLCT 207
           TTN+EPVNITNCQYPLTIQDELFQLCT
Sbjct: 181 TTNMEPVNITNCQYPLTIQDELFQLCT 207

[Close]

BLAST of Cla012507 vs. TrEMBL
Match: B9SKA4_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1030190 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.1e-65
Identity = 140/208 (67.31%), Postives = 167/208 (80.29%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRR+GLLKKAKELSVLC+A+IG+FIFSAHGKLY+LATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLATK 60

Query: 61  GTMQGLIERYMKHTNGN--QPPDPPID--HQTLEVKDEVIRLKQEIEVL-KGLRNALGGG 120
           GTM GLIERYM  T GN  Q  D   +   Q L+ K+E+  LKQEIE+L KGLR+ LGGG
Sbjct: 61  GTMSGLIERYMNATGGNSLQAEDKAKETMQQPLDAKEEISMLKQEIEILQKGLRHLLGGG 120

Query: 121 GSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 180
            +E  MTLDEL + EK LEIWI  +R+TKM+ M +EI+ LRN+E ILKAAN+YL DK++E
Sbjct: 121 AAE--MTLDELLILEKNLEIWIYHIRSTKMEIMAKEIQLLRNKEGILKAANQYLQDKIEE 180

Query: 181 NISNTTNIEPVNITNCQYPLTIQDELFQ 204
           N+ + TN  P+  TN  YPLTIQ+E+FQ
Sbjct: 181 NV-DITNFAPMT-TNFPYPLTIQNEIFQ 204

[Close]

BLAST of Cla012507 vs. TrEMBL
Match: I1LNS4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G005000 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.9e-64
Identity = 132/205 (64.39%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTMQGLIERYMK + G QP   P  H  L+ K+E   LKQEI+ L KG+R+  GGG    
Sbjct: 61  GTMQGLIERYMKFSRGAQPEAAPEAHPLLDAKEETNMLKQEIQTLQKGIRHLFGGGNK-- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MT+DEL + EK LE WI  +R+ KM  M +EI+AL+++E  LKAANKYLHDK+ EN + 
Sbjct: 121 TMTIDELQVLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAI 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQL 205
           +   +    T+  YPL IQDE+FQL
Sbjct: 181 SNFAQFATDTSNSYPLIIQDEVFQL 203

[Close]

BLAST of Cla012507 vs. TrEMBL
Match: A0A0B2RDD5_GLYSO (Agamous-like MADS-box protein AGL12 OS=Glycine soja GN=glysoja_026335 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.9e-64
Identity = 132/205 (64.39%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTMQGLIERYMK + G QP   P  H  L+ K+E   LKQEI+ L KG+R+  GGG    
Sbjct: 61  GTMQGLIERYMKFSRGAQPEAAPEAHPLLDAKEETNMLKQEIQTLQKGIRHLFGGGNK-- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MT+DEL + EK LE WI  +R+ KM  M +EI+AL+++E  LKAANKYLHDK+ EN + 
Sbjct: 121 TMTIDELQVLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAI 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQL 205
           +   +    T+  YPL IQDE+FQL
Sbjct: 181 SNFAQFATDTSNSYPLIIQDEVFQL 203

[Close]

BLAST of Cla012507 vs. TrEMBL
Match: B2KJ31_POPTO (MADS box transcription factor OS=Populus tomentosa GN=MADS2 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-63
Identity = 137/205 (66.83%), Postives = 162/205 (79.02%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQM+RIEN VHRQVTFCKRR+GLLKKAKELSVLC+A+IGVFIFSAHGKLYELATK
Sbjct: 1   MARGKVQMRRIENSVHRQVTFCKRRSGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQ-TLEVKDEVIRLKQEIEVL-KGLRNALGGGGSE 120
           G MQGLIERYMK + G QP    I+ Q  ++  +E+ +LKQEIE+L KGLR   GG  +E
Sbjct: 61  GNMQGLIERYMKSSRGTQPEPATIETQPDMDANEEINKLKQEIEILQKGLRFMFGGCAAE 120

Query: 121 GIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENIS 180
             MTLDEL   EK LEIWI ++R+TK+  M +EIE LRN+E ILKAAN+YL DK++ENI 
Sbjct: 121 --MTLDELIGLEKHLEIWIYKIRSTKVDIMFKEIEQLRNKEGILKAANQYLQDKVEENIM 180

Query: 181 NTTNIEPVNITNCQYPLTIQDELFQ 204
             TN  P+  TN  YPLTIQ+E+FQ
Sbjct: 181 -ITNFAPIT-TNIPYPLTIQNEIFQ 201

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|778708029|ref|XP_011656111.1| (PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 2.0e-106
Identity = 193/207 (93.24%), Postives = 202/207 (97.58%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGI 120
           GTMQGLIERYMKHTNGNQPPDPPI HQTLEVK+E+IRLKQEIEVLKGLRNALGGGG EGI
Sbjct: 61  GTMQGLIERYMKHTNGNQPPDPPIHHQTLEVKEEIIRLKQEIEVLKGLRNALGGGGGEGI 120

Query: 121 MTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMD-ENISN 180
           MTLDELD+FEKQLEIWICQVR+TKMKFMCEEIEALRNQE IL AANKYLHDKM+ ENISN
Sbjct: 121 MTLDELDIFEKQLEIWICQVRSTKMKFMCEEIEALRNQEFILTAANKYLHDKMEAENISN 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQLCT 207
           TTN+EPVNITNCQYPLTIQDELFQLCT
Sbjct: 181 TTNMEPVNITNCQYPLTIQDELFQLCT 207

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|659119561|ref|XP_008459723.1| (PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 8.9e-78
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGI 120
           GTMQGLIERYMKHTNGNQPPDPPI HQT E K+E+IRLKQEIEVLKGLRNALGGGG EGI
Sbjct: 61  GTMQGLIERYMKHTNGNQPPDPPIHHQTSEAKEEIIRLKQEIEVLKGLRNALGGGGGEGI 120

Query: 121 MTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQ 159
           M LDELDMFEKQLEIWICQVR+TKMKFM EEIEALRNQ
Sbjct: 121 MRLDELDMFEKQLEIWICQVRSTKMKFMSEEIEALRNQ 158

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|255570943|ref|XP_002526423.1| (PREDICTED: agamous-like MADS-box protein AGL12 [Ricinus communis])

HSP 1 Score: 256.9 bits (655), Expect = 3.0e-65
Identity = 140/208 (67.31%), Postives = 167/208 (80.29%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRR+GLLKKAKELSVLC+A+IG+FIFSAHGKLY+LATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLATK 60

Query: 61  GTMQGLIERYMKHTNGN--QPPDPPID--HQTLEVKDEVIRLKQEIEVL-KGLRNALGGG 120
           GTM GLIERYM  T GN  Q  D   +   Q L+ K+E+  LKQEIE+L KGLR+ LGGG
Sbjct: 61  GTMSGLIERYMNATGGNSLQAEDKAKETMQQPLDAKEEISMLKQEIEILQKGLRHLLGGG 120

Query: 121 GSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDE 180
            +E  MTLDEL + EK LEIWI  +R+TKM+ M +EI+ LRN+E ILKAAN+YL DK++E
Sbjct: 121 AAE--MTLDELLILEKNLEIWIYHIRSTKMEIMAKEIQLLRNKEGILKAANQYLQDKIEE 180

Query: 181 NISNTTNIEPVNITNCQYPLTIQDELFQ 204
           N+ + TN  P+  TN  YPLTIQ+E+FQ
Sbjct: 181 NV-DITNFAPMT-TNFPYPLTIQNEIFQ 204

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|802540604|ref|XP_012077413.1| (PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas])

HSP 1 Score: 255.4 bits (651), Expect = 8.7e-65
Identity = 136/204 (66.67%), Postives = 163/204 (79.90%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQMKRIENPVHRQVTFCKRR+GLLKKAKELSVLC+A+IG+ IFSAHGKLYELATK
Sbjct: 1   MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGILIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTMQGLIERYMK T G+   +   + + L+  +E+  LKQEI +L KGLR+ LGGG +E 
Sbjct: 61  GTMQGLIERYMKPTGGSVQNEQAKETEPLDAIEEINMLKQEINILQKGLRHILGGGAAE- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MT+DEL + EK LEIWIC VR+TKM  M +EI+ L+N+E ILKAAN+YL DK++ENI  
Sbjct: 121 -MTMDELLILEKNLEIWICHVRSTKMDLMSKEIQLLKNKEGILKAANQYLQDKIEENI-E 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQ 204
            TN   +  TN  YPLTIQ+E+FQ
Sbjct: 181 ITNFASMT-TNIPYPLTIQNEIFQ 200

[Close]

BLAST of Cla012507 vs. NCBI nr
Match: gi|571491267|ref|XP_006591861.1| (PREDICTED: uncharacterized protein LOC100783345 isoform X1 [Glycine max])

HSP 1 Score: 252.7 bits (644), Expect = 5.6e-64
Identity = 132/205 (64.39%), Postives = 157/205 (76.59%), Query Frame = 1


Query: 1   MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYELATK 60
           MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLC+A+IG+FIFSAHGKLYELATK
Sbjct: 1   MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATK 60

Query: 61  GTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVL-KGLRNALGGGGSEG 120
           GTMQGLIERYMK + G QP   P  H  L+ K+E   LKQEI+ L KG+R+  GGG    
Sbjct: 61  GTMQGLIERYMKFSRGAQPEAAPEAHPLLDAKEETNMLKQEIQTLQKGIRHLFGGGNK-- 120

Query: 121 IMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISN 180
            MT+DEL + EK LE WI  +R+ KM  M +EI+AL+++E  LKAANKYLHDK+ EN + 
Sbjct: 121 TMTIDELQVLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAI 180

Query: 181 TTNIEPVNITNCQYPLTIQDELFQL 205
           +   +    T+  YPL IQDE+FQL
Sbjct: 181 SNFAQFATDTSNSYPLIIQDEVFQL 203

The following BLAST results are available for this feature:

BLAST of Cla012507 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL12_ARATH	2.1e-55	55.66	Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2	[more]
MAD33_ORYSJ	7.4e-48	50.24	MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 ...	[more]
MAD26_ORYSI	1.8e-46	57.95	MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV...	[more]
MAD26_ORYSJ	1.8e-46	57.95	MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 ...	[more]
SOC1_ARATH	2.0e-29	44.19	MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1	[more]

BLAST of Cla012507 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW77_CUCSA	1.4e-106	93.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650620 PE=4 SV=1	[more]
B9SKA4_RICCO	2.1e-65	67.31	Mads box protein, putative OS=Ricinus communis GN=RCOM_1030190 PE=4 SV=1	[more]
I1LNS4_SOYBN	3.9e-64	64.39	Uncharacterized protein OS=Glycine max GN=GLYMA_12G005000 PE=4 SV=1	[more]
A0A0B2RDD5_GLYSO	3.9e-64	64.39	Agamous-like MADS-box protein AGL12 OS=Glycine soja GN=glysoja_026335 PE=4 SV=1	[more]
B2KJ31_POPTO	1.5e-63	66.83	MADS box transcription factor OS=Populus tomentosa GN=MADS2 PE=2 SV=1	[more]

BLAST of Cla012507 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708029\|ref\|XP_011656111.1\|	2.0e-106	93.24	PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis sativus]	[more]
gi\|659119561\|ref\|XP_008459723.1\|	8.9e-78	92.41	PREDICTED: agamous-like MADS-box protein AGL12 [Cucumis melo]	[more]
gi\|255570943\|ref\|XP_002526423.1\|	3.0e-65	67.31	PREDICTED: agamous-like MADS-box protein AGL12 [Ricinus communis]	[more]
gi\|802540604\|ref\|XP_012077413.1\|	8.7e-65	66.67	PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas]	[more]
gi\|571491267\|ref\|XP_006591861.1\|	5.6e-64	64.39	PREDICTED: uncharacterized protein LOC100783345 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006811	ion transport
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0048569	post-embryonic animal organ development
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0050896	response to stimulus
biological_process	GO:0048364	root development
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla012507	Cla012507	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla012507	Cla012507.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla012507.1.cds7	Cla012507.1.cds7	CDS
Cla012507.1.cds6	Cla012507.1.cds6	CDS
Cla012507.1.cds5	Cla012507.1.cds5	CDS
Cla012507.1.cds4	Cla012507.1.cds4	CDS
Cla012507.1.cds3	Cla012507.1.cds3	CDS
Cla012507.1.cds2	Cla012507.1.cds2	CDS
Cla012507.1.cds1	Cla012507.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 1.9E-25coord: 38..59 score: 1.9E-25coord: 3..23 score: 1.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..56 score: 6.8
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 2.0
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 28
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 1..76 score: 3.01
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 87..173 score: 9.3
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 88..179 score: 10
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..194 score: 2.8
None	No IPR available	PANTHER	PTHR11945:SF152	AGAMOUS-LIKE MADS-BOX PROTEIN AGL12	coord: 2..194 score: 2.8