Cla011568 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011568
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 3962017 .. 3962283 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAAAAGCTACTGTCACCTCTCTCGCATTCCTCCTCGCTCTCATTCTCTTCTCATTATCCTCCTTCGTTTCCTCTTGCATCGACGACTGCTACATTCCGTCCAATGCTACACCTACACCTTCACCTTTACCTTCTACCGAGGAGGGAAAAAGATGCCCAAGAGACACTCTTAAATTCCGTATTTGCTCGAAATTGCTCGACGCTCGCACCGACGTTACCAGTGACAAGCGACCGGGGCACTCTAATGGAAGGGCTCATTGA

mRNA sequence

ATGGCTTCAAAAGCTACTGTCACCTCTCTCGCATTCCTCCTCGCTCTCATTCTCTTCTCATTATCCTCCTTCGTTTCCTCTTGCATCGACGACTGCTACATTCCGTCCAATGCTACACCTACACCTTCACCTTTACCTTCTACCGAGGAGGGAAAAAGATGCCCAAGAGACACTCTTAAATTCCGTATTTGCTCGAAATTGCTCGACGCTCGCACCGACGTTACCAGTGACAAGCGACCGGGGCACTCTAATGGAAGGGCTCATTGA

Coding sequence (CDS)

ATGGCTTCAAAAGCTACTGTCACCTCTCTCGCATTCCTCCTCGCTCTCATTCTCTTCTCATTATCCTCCTTCGTTTCCTCTTGCATCGACGACTGCTACATTCCGTCCAATGCTACACCTACACCTTCACCTTTACCTTCTACCGAGGAGGGAAAAAGATGCCCAAGAGACACTCTTAAATTCCGTATTTGCTCGAAATTGCTCGACGCTCGCACCGACGTTACCAGTGACAAGCGACCGGGGCACTCTAATGGAAGGGCTCATTGA

Protein sequence

MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLKFRICSKLLDARTDVTSDKRPGHSNGRAH

Homology

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KR89_CUCSA (HyPRP2 OS=Cucumis sativus GN=Csa_5G161900 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-09
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSN--------ATPTPSPLPSTEEGK 60
          MASKAT TSLAFLL+L L   +  VS+C ++CYIP            PTP P PS+  GK
Sbjct: 1  MASKAT-TSLAFLLSLNLLFFT-LVSAC-NNCYIPDPPKPKPCPPTKPTPKPSPSSGYGK 60

Query: 61 RCPRDTLKFRICSKLLDARTDVTSDKRP 81
           CPRDTLK  +C+KLL    D+T  K P
Sbjct: 61 -CPRDTLKLGVCAKLLGGLLDITIGKPP 84

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KKK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161300 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-09
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLK 60
          M SKAT  SLAFLLALIL S S+FVS     CY  SN  PT    PST+  K+CP++TL 
Sbjct: 1  MVSKATA-SLAFLLALILLS-STFVS-----CYDTSNLRPTT---PSTKARKKCPKNTLN 60

Query: 61 FRICSKLLDARTDVTSDKRP 81
          F ICSKLL+  T+   +K P
Sbjct: 61 FEICSKLLNGETNADIEKCP 70

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KKU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161870 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.6e-09
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLK 60
          MASKAT  SLAFLL+L L   +  VSSC D+CY+P  A P P P P ++ GK CP+D LK
Sbjct: 1  MASKATA-SLAFLLSLNLLFFT-LVSSC-DNCYVP--APPKPEPYPPSDYGK-CPKDALK 60

Query: 61 FRICSKLLDARTDVTSDKRP 81
            +C+KLL    D+T  K P
Sbjct: 61 IGVCAKLLGGLVDLTIGKPP 74

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KKL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161890 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-08
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGK-----RCP 60
          MASKA+  SLAFLL+L L   + FVS+C D+CY+P  A P P P P T+        +CP
Sbjct: 1  MASKASA-SLAFLLSLNLLFFT-FVSAC-DNCYVP--APPKPKPCPPTKPNPPSNYGKCP 60

Query: 61 RDTLKFRICSKLLDARTDVTSDKRP 81
          +DTLK  +C+KLL    D+T  K P
Sbjct: 61 KDTLKIGVCAKLLGGLVDLTIGKPP 80

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KP86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161860 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-08
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGK-----RCP 60
          MASKAT  SLAFLL+L L   + FVS+C D+CY+P  A P P P P T+        +CP
Sbjct: 1  MASKATA-SLAFLLSLNLLFFT-FVSAC-DNCYVP--APPKPKPCPPTKPNPPSNYGKCP 60

Query: 61 RDTLKFRICSKLLDARTDVTSDKRP 81
          +D LK  +C+KLL    D+T  K P
Sbjct: 61 KDALKIGVCAKLLGGLVDLTIGKPP 80

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|659073537|ref|XP_008437114.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-10
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLK 60
          MASK T TSLAFL   I+ S S+FVS     CY  SN  PTPS   +++ GK+CP+DTLK
Sbjct: 1  MASKVT-TSLAFLFTFIILS-STFVS-----CYDTSNPRPTPS---TSKAGKKCPKDTLK 60

Query: 61 FRICSKLLDARTDVTS-DKRP 81
          F ICS+LL  +TDV + +KRP
Sbjct: 61 FEICSELLKGQTDVVAIEKRP 71

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|659073515|ref|XP_008437101.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-09
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSN--------ATPTPSPLPSTEEGK 60
          MASKAT TSLAFLL+L L   +  VS+C ++CY+P            PTP P PS+  GK
Sbjct: 1  MASKAT-TSLAFLLSLNLLFFT-LVSAC-NNCYVPEPPKPKPCPPTKPTPKPSPSSGYGK 60

Query: 61 RCPRDTLKFRICSKLLDARTDVTSDKRP 81
           CPRDTLK  +C+KLL    DVT  K P
Sbjct: 61 -CPRDTLKLGVCAKLLGGLVDVTIGKPP 84

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|659073519|ref|XP_008437103.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-09
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGK-----RCP 60
          MASKAT  SLAFLL L L   + FVS+C D+CY+P+   P P P P T+        +CP
Sbjct: 1  MASKATA-SLAFLLCLNLLFFT-FVSAC-DNCYVPAPTKPKPKPCPPTKPNHPSKYGKCP 60

Query: 61 RDTLKFRICSKLLDARTDVTSDKRP 81
          +D LK  +C+KLL    D+T  K P
Sbjct: 61 KDALKIGVCAKLLGGLVDITIGKPP 82

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|700195053|gb|KGN50230.1| (hypothetical protein Csa_5G161300 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-09
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLK 60
          M SKAT  SLAFLLALIL S S+FVS     CY  SN  PT    PST+  K+CP++TL 
Sbjct: 1  MVSKATA-SLAFLLALILLS-STFVS-----CYDTSNLRPTT---PSTKARKKCPKNTLN 60

Query: 61 FRICSKLLDARTDVTSDKRP 81
          F ICSKLL+  T+   +K P
Sbjct: 61 FEICSKLLNGETNADIEKCP 70

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|778700010|ref|XP_004152410.2| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-09
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSN--------ATPTPSPLPSTEEGK 60
          MASKAT TSLAFLL+L L   +  VS+C ++CYIP            PTP P PS+  GK
Sbjct: 1  MASKAT-TSLAFLLSLNLLFFT-LVSAC-NNCYIPDPPKPKPCPPTKPTPKPSPSSGYGK 60

Query: 61 RCPRDTLKFRICSKLLDARTDVTSDKRP 81
           CPRDTLK  +C+KLL    D+T  K P
Sbjct: 61 -CPRDTLKLGVCAKLLGGLLDITIGKPP 84

The following BLAST results are available for this feature:

BLAST of Cla011568 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR89_CUCSA	5.8e-09	51.14	HyPRP2 OS=Cucumis sativus GN=Csa_5G161900 PE=4 SV=1	[more]
A0A0A0KKK9_CUCSA	5.8e-09	55.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161300 PE=4 SV=1	[more]
A0A0A0KKU4_CUCSA	7.6e-09	52.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161870 PE=4 SV=1	[more]
A0A0A0KKL9_CUCSA	3.8e-08	48.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161890 PE=4 SV=1	[more]
A0A0A0KP86_CUCSA	4.9e-08	48.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161860 PE=4 SV=1	[more]

BLAST of Cla011568 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073537\|ref\|XP_008437114.1\|	4.4e-10	55.56	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]	[more]
gi\|659073515\|ref\|XP_008437101.1\|	6.4e-09	51.14	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]	[more]
gi\|659073519\|ref\|XP_008437103.1\|	6.4e-09	47.06	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]	[more]
gi\|700195053\|gb\|KGN50230.1\|	8.4e-09	55.00	hypothetical protein Csa_5G161300 [Cucumis sativus]	[more]
gi\|778700010\|ref\|XP_004152410.2\|	8.4e-09	51.14	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011568	Cla011568.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla011568	Cla97C01G004060	Watermelon (97103) v2	wmwmbB235
Cla011568	Bhi12G000395	Wax gourd	wgowmB077

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011568	Watermelon (97103) v2	wmwmbB254
Cla011568	Watermelon (97103) v1	wmwmB049
Cla011568	Cucumber (Gy14) v1	cgywmB552
Cla011568	Cucumber (Gy14) v1	cgywmB588
Cla011568	Cucurbita maxima (Rimu)	cmawmB277
Cla011568	Cucurbita maxima (Rimu)	cmawmB568
Cla011568	Cucurbita maxima (Rimu)	cmawmB576
Cla011568	Cucurbita maxima (Rimu)	cmawmB805
Cla011568	Cucurbita moschata (Rifu)	cmowmB267
Cla011568	Cucurbita moschata (Rifu)	cmowmB563
Cla011568	Cucurbita moschata (Rifu)	cmowmB570
Cla011568	Cucurbita moschata (Rifu)	cmowmB795
Cla011568	Melon (DHL92) v3.5.1	mewmB029
Cla011568	Melon (DHL92) v3.5.1	mewmB477
Cla011568	Watermelon (Charleston Gray)	wcgwmB071
Cla011568	Watermelon (Charleston Gray)	wcgwmB142
Cla011568	Cucumber (Chinese Long) v2	cuwmB263
Cla011568	Cucumber (Chinese Long) v2	cuwmB408
Cla011568	Cucurbita pepo (Zucchini)	cpewmB183
Cla011568	Cucurbita pepo (Zucchini)	cpewmB711
Cla011568	Cucurbita pepo (Zucchini)	cpewmB846
Cla011568	Bottle gourd (USVL1VR-Ls)	lsiwmB027
Cla011568	Bottle gourd (USVL1VR-Ls)	lsiwmB454
Cla011568	Cucumber (Gy14) v2	cgybwmB248
Cla011568	Cucumber (Gy14) v2	cgybwmB381
Cla011568	Melon (DHL92) v3.6.1	medwmB027
Cla011568	Silver-seed gourd	carwmB0924
Cla011568	Cucumber (Chinese Long) v3	cucwmB273
Cla011568	Cucumber (Chinese Long) v3	cucwmB433