Cla011568.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011568
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 3962017 .. 3962283 (+)
Sequence length	267

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAAAAGCTACTGTCACCTCTCTCGCATTCCTCCTCGCTCTCATTCTCTTCTCATTATCCTCCTTCGTTTCCTCTTGCATCGACGACTGCTACATTCCGTCCAATGCTACACCTACACCTTCACCTTTACCTTCTACCGAGGAGGGAAAAAGATGCCCAAGAGACACTCTTAAATTCCGTATTTGCTCGAAATTGCTCGACGCTCGCACCGACGTTACCAGTGACAAGCGACCGGGGCACTCTAATGGAAGGGCTCATTGA

mRNA sequence

ATGGCTTCAAAAGCTACTGTCACCTCTCTCGCATTCCTCCTCGCTCTCATTCTCTTCTCATTATCCTCCTTCGTTTCCTCTTGCATCGACGACTGCTACATTCCGTCCAATGCTACACCTACACCTTCACCTTTACCTTCTACCGAGGAGGGAAAAAGATGCCCAAGAGACACTCTTAAATTCCGTATTTGCTCGAAATTGCTCGACGCTCGCACCGACGTTACCAGTGACAAGCGACCGGGGCACTCTAATGGAAGGGCTCATTGA

Coding sequence (CDS)

ATGGCTTCAAAAGCTACTGTCACCTCTCTCGCATTCCTCCTCGCTCTCATTCTCTTCTCATTATCCTCCTTCGTTTCCTCTTGCATCGACGACTGCTACATTCCGTCCAATGCTACACCTACACCTTCACCTTTACCTTCTACCGAGGAGGGAAAAAGATGCCCAAGAGACACTCTTAAATTCCGTATTTGCTCGAAATTGCTCGACGCTCGCACCGACGTTACCAGTGACAAGCGACCGGGGCACTCTAATGGAAGGGCTCATTGA

Protein sequence

MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLKFRICSKLLDARTDVTSDKRPGHSNGRAH

Homology

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KR89_CUCSA (HyPRP2 OS=Cucumis sativus GN=Csa_5G161900 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-09
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSN--------ATPTPSPLPSTEEGK 60
          MASKAT TSLAFLL+L L   +  VS+C ++CYIP            PTP P PS+  GK
Sbjct: 1  MASKAT-TSLAFLLSLNLLFFT-LVSAC-NNCYIPDPPKPKPCPPTKPTPKPSPSSGYGK 60

Query: 61 RCPRDTLKFRICSKLLDARTDVTSDKRP 81
           CPRDTLK  +C+KLL    D+T  K P
Sbjct: 61 -CPRDTLKLGVCAKLLGGLLDITIGKPP 84

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KKK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161300 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-09
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLK 60
          M SKAT  SLAFLLALIL S S+FVS     CY  SN  PT    PST+  K+CP++TL 
Sbjct: 1  MVSKATA-SLAFLLALILLS-STFVS-----CYDTSNLRPTT---PSTKARKKCPKNTLN 60

Query: 61 FRICSKLLDARTDVTSDKRP 81
          F ICSKLL+  T+   +K P
Sbjct: 61 FEICSKLLNGETNADIEKCP 70

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KKU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161870 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.6e-09
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLK 60
          MASKAT  SLAFLL+L L   +  VSSC D+CY+P  A P P P P ++ GK CP+D LK
Sbjct: 1  MASKATA-SLAFLLSLNLLFFT-LVSSC-DNCYVP--APPKPEPYPPSDYGK-CPKDALK 60

Query: 61 FRICSKLLDARTDVTSDKRP 81
            +C+KLL    D+T  K P
Sbjct: 61 IGVCAKLLGGLVDLTIGKPP 74

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KKL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161890 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-08
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGK-----RCP 60
          MASKA+  SLAFLL+L L   + FVS+C D+CY+P  A P P P P T+        +CP
Sbjct: 1  MASKASA-SLAFLLSLNLLFFT-FVSAC-DNCYVP--APPKPKPCPPTKPNPPSNYGKCP 60

Query: 61 RDTLKFRICSKLLDARTDVTSDKRP 81
          +DTLK  +C+KLL    D+T  K P
Sbjct: 61 KDTLKIGVCAKLLGGLVDLTIGKPP 80

[Close]

BLAST of Cla011568 vs. TrEMBL
Match: A0A0A0KP86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161860 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-08
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGK-----RCP 60
          MASKAT  SLAFLL+L L   + FVS+C D+CY+P  A P P P P T+        +CP
Sbjct: 1  MASKATA-SLAFLLSLNLLFFT-FVSAC-DNCYVP--APPKPKPCPPTKPNPPSNYGKCP 60

Query: 61 RDTLKFRICSKLLDARTDVTSDKRP 81
          +D LK  +C+KLL    D+T  K P
Sbjct: 61 KDALKIGVCAKLLGGLVDLTIGKPP 80

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|659073537|ref|XP_008437114.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-10
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLK 60
          MASK T TSLAFL   I+ S S+FVS     CY  SN  PTPS   +++ GK+CP+DTLK
Sbjct: 1  MASKVT-TSLAFLFTFIILS-STFVS-----CYDTSNPRPTPS---TSKAGKKCPKDTLK 60

Query: 61 FRICSKLLDARTDVTS-DKRP 81
          F ICS+LL  +TDV + +KRP
Sbjct: 61 FEICSELLKGQTDVVAIEKRP 71

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|659073515|ref|XP_008437101.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-09
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSN--------ATPTPSPLPSTEEGK 60
          MASKAT TSLAFLL+L L   +  VS+C ++CY+P            PTP P PS+  GK
Sbjct: 1  MASKAT-TSLAFLLSLNLLFFT-LVSAC-NNCYVPEPPKPKPCPPTKPTPKPSPSSGYGK 60

Query: 61 RCPRDTLKFRICSKLLDARTDVTSDKRP 81
           CPRDTLK  +C+KLL    DVT  K P
Sbjct: 61 -CPRDTLKLGVCAKLLGGLVDVTIGKPP 84

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|659073519|ref|XP_008437103.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-09
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGK-----RCP 60
          MASKAT  SLAFLL L L   + FVS+C D+CY+P+   P P P P T+        +CP
Sbjct: 1  MASKATA-SLAFLLCLNLLFFT-FVSAC-DNCYVPAPTKPKPKPCPPTKPNHPSKYGKCP 60

Query: 61 RDTLKFRICSKLLDARTDVTSDKRP 81
          +D LK  +C+KLL    D+T  K P
Sbjct: 61 KDALKIGVCAKLLGGLVDITIGKPP 82

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|700195053|gb|KGN50230.1| (hypothetical protein Csa_5G161300 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-09
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSNATPTPSPLPSTEEGKRCPRDTLK 60
          M SKAT  SLAFLLALIL S S+FVS     CY  SN  PT    PST+  K+CP++TL 
Sbjct: 1  MVSKATA-SLAFLLALILLS-STFVS-----CYDTSNLRPTT---PSTKARKKCPKNTLN 60

Query: 61 FRICSKLLDARTDVTSDKRP 81
          F ICSKLL+  T+   +K P
Sbjct: 61 FEICSKLLNGETNADIEKCP 70

[Close]

BLAST of Cla011568 vs. NCBI nr
Match: gi|778700010|ref|XP_004152410.2| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-09
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 1  MASKATVTSLAFLLALILFSLSSFVSSCIDDCYIPSN--------ATPTPSPLPSTEEGK 60
          MASKAT TSLAFLL+L L   +  VS+C ++CYIP            PTP P PS+  GK
Sbjct: 1  MASKAT-TSLAFLLSLNLLFFT-LVSAC-NNCYIPDPPKPKPCPPTKPTPKPSPSSGYGK 60

Query: 61 RCPRDTLKFRICSKLLDARTDVTSDKRP 81
           CPRDTLK  +C+KLL    D+T  K P
Sbjct: 61 -CPRDTLKLGVCAKLLGGLLDITIGKPP 84

The following BLAST results are available for this feature:

BLAST of Cla011568 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR89_CUCSA	5.8e-09	51.14	HyPRP2 OS=Cucumis sativus GN=Csa_5G161900 PE=4 SV=1	[more]
A0A0A0KKK9_CUCSA	5.8e-09	55.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161300 PE=4 SV=1	[more]
A0A0A0KKU4_CUCSA	7.6e-09	52.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161870 PE=4 SV=1	[more]
A0A0A0KKL9_CUCSA	3.8e-08	48.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161890 PE=4 SV=1	[more]
A0A0A0KP86_CUCSA	4.9e-08	48.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161860 PE=4 SV=1	[more]

BLAST of Cla011568 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073537\|ref\|XP_008437114.1\|	4.4e-10	55.56	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]	[more]
gi\|659073515\|ref\|XP_008437101.1\|	6.4e-09	51.14	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]	[more]
gi\|659073519\|ref\|XP_008437103.1\|	6.4e-09	47.06	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]	[more]
gi\|700195053\|gb\|KGN50230.1\|	8.4e-09	55.00	hypothetical protein Csa_5G161300 [Cucumis sativus]	[more]
gi\|778700010\|ref\|XP_004152410.2\|	8.4e-09	51.14	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla011568	Cla011568	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla011568	Cla011568.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla011568.1.cds1	Cla011568.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score: