Cla011287 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011287
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein translocase subunit SecA (AHRD V1 -- A7VDW3_9CLOT); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
Location	Chr3 : 27199243 .. 27203485 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGATCAAGGGAGTCATCACTGGGAAGAAAAGCCCTCCCGAAGGAACCGAAGTCAGCTCCGAGTCTTTTACTCTCCTCCGTACGCCTCATTTCTCATCACTTGCGGTTGCATTTCTTCAATTGCATGATTTTATTCATAAACATGGCCACGGATTGGCGATTTTTAATTTTTTTTTATCTATTTATTTTTCTCAGGGTTTGCTGATGAGTTGAAAAATGCCCGAAGAGTGGGAGCATTCAAGCAATATATAGTGGGAAGAAGTAGTGAAGCAACTTTTGCAGATGCTTTTGAGAAGCAGGAGGCAATTATTCGCTATTTGGGAGGTTTTGATTCCACTGGAGAGGTTGGCATAGTTTTATTTTTCTTCAATTTGTTTTGTAACAAATTACTTATTGTTTGAGTTGGCTTTGTGGAAAAAAGTCTTTTTTTTTTTTCTTTTTTTTTTTCTCCTCTAAAGCAGGAATACTTACTTTCATTTGTTCGAGTCTCCCCCTTTAGATCCCTGATTGAGGTTTGTAAGAGTATTGAGAAGTTGATGCGGAACCTTTTGTGGGAAGGTGAGGAAGAAGGAAAAGGATTGCACTTGGTCAGGTGGGAGCTCATTGAGAGATCGGTTGCCTCGGGGAGAGTAGAGATTGGGAATTTAAGGTTTCATAACAAAGCTTTGTTAGCTAAATGGTTGTGGCAGTTCTCCTGTGAGTCTAGTTCCCTCTGGGATAGGACCATTGGTAGTAAGTTTGGGCCTCATTCTTTTGAATGGCTGTTGCATGTGGTTAAAGGCACATATCAGAACGTATGGAAGGATATTCCTAAGGACCTCCCTTCTTTCTCTCATTTGGTCCGTTGTGTAGTGTGGGAGGGTAAAGATACTTACTTTTGTGAGGGATAGACCCCTCTGCTTGTTGTTTCCACGTCTCTTTCACTCGGTCTTCCTATAAAAGTCTTTTGGTGTTCGATTTTTTAGTTTGGTTGAGCAGCTCCTTGTCCTTTTTGTTTGGTTTTTGTTGCTCTTTGTCTGAAAGGGAAGCGAGGGATGTGGCCTCCTTTTTGGCCTTGCTTGAGGGGGTTGTCTTTAGATAGGGGAGAAAGGATGTTAGGTTATGTAGTTCCAATCATTTGGAGGGATTCTCGTGTAACTCTTTCTTTCGTTGCTTTCTTGATCCTTCTCCCTCAGATGAGTCGGTTTATTCTCCTCTATAGAGGATTAAGATTCCTAGGAAAGTTAAATTCTGTACCTGGCAAGTTTTACATATAAAAGTTAACACTTTGGATCGTTTTGTGAGGAAGATTTCATTGTTACTTGGTCTGTATTGCAGTGTTCTCTGTTAGATCGTATTCCTTGGAGTTGTGAGCTTGCAAGAGCTGTTTGGAGTGATTTCTTTCAAACGTTTGGTTTCTTGCTGCCTCATCACAAGGATGCTTATGATATGATTAAGGAGTTCCTCCTCCATCTGCCCTTACGTGAGAAGGATCGTTTTCTTTGGCTTGTTGGGATAGAGTGCTTACATGAAAGTGATGTTTGATCTCTTTCACACGTCTTCCTATAAAAATCTTGTGGTGTTCGATTTTTTAGTTTGGTTGAGCAACTCCTTGTCCTTTTAGTTTGGTTTTTGTTGCTCTTTGTTTGAAAGGGAAGCGGGGCATGTGGCCTCTTTTTTGGCCTTGCTTGAGGGGGTTGTCTTTAGATAGGGGAGAAAGGATGTTAGGTTGTGGAGTTCCAATCATGGGGATTCTCATGTAACTCTTTCTTTCGTTGCCTTCTTGATCCTTCTCCCTCAGGTGAGTCGGTTTTTTCTCCTTTTATAGAGGATTAAGATTCCTAGGAAAGTTAAGTTCTTTACTTGGCAAGTTTTACATGGAAGAGTTAACACTTTGGATCGTTTTGTGAGGAAGATTTCATTGTTAGTTGGTCTGTTTTGCAGTATTCTCCGTTAGATCGCATTCCTTGGAGTTGTGAGTTCGCGAGAGCTATTTGGAGTGATTTCTTTCAGACGTTTGGTTTCTTGCTACCTCATCACAAGGATACTTATGATATGATTAGGGAGTTCCTCCACCATCCGCTCTTACGTGAGAAGGGCCGTTTTCTTTGGCTTGTTGGGATGTGTGCTATTCTATGGGGTCTTGGAGATAGAGAAATGATAGAGTGCTTATAGGGTTGGAAAGGAATGCTAGTGATGTTTGGTCCCTTGTTAGATGAAAATCAATTGAAAATGAGGTGTTAATTTGGTCTTTTGCAGCGTTGAGATTATGTATGATTTGTCCAATGAAACGCAAGTTTTCTTATTAAAACCCAAGTGTATTTCTACAAGTTATCATTAGATTTCATGTTTCCCTTCGAGTTTCGATTTCTAAGTCATTTTGTAATTATTCTATAGGTTCTATTTTTCATAGTTGGGGTCCCTTCTTCTAATTCGGTTCTTTATTTATTTATTTTTTTTTTTGTGGGCTTTCTTTTAGTATGCTCGTGTATTCTTCCATGTTTTCTCAATGGTAGTTGTTATTATAAAAAGGAATGAAAAATGATATAGAGGTTCATTAGAGATCTGAGGGTCTATGTGAAGCAAATTGAAGACTTTTTTTCTCTTTGGTTATTTTGTTTTGTTTAAGATGATTAGGGTTTCATTGCTTTGAGGAAAAGGTGTTTTTCTCTTTGCCTAAGCTTTTTTTTTTTTTTTTTTTTTTTTTCCAGATATTTCTTTTGTATTTTTCTTTCATTTGTTATCCATCTCACTCCTTTTGAGTTTGTATCCTTTGAGGAAAAAGTGTTTTTCTTCATACATTTATTTGTAATCACTTAGCTAAAATTCGAGGTACTTGGACCCTCCCCTCTTGAGATCTCTCAAGTCTCAATTTACTCACCATAATATCGCATGTCTCCTCCTTTCTCACTCACTATATTTATAACCACACTTTCCTTATAAACTCCTTAACTAATTAGTAATTACTAACATACTCTTAATACCTATCAATATCTCCATTTCTATCCTACTAGCATTCCTATCATGAGTTTAAGAAAAAACTAGCTAGGTTCCTTGTAGCGTTCTGTCATTTTCTTAAAATAAAAGAAACAAACGTGTTTTGCATTCCGCATTCTCTAATCTTTATTTATTTCCAACAGTTTCCATATTAATTTGCGCTTCTGGATAAGTTCTCTGATTGTGATCTTAGGCTTCCTGATATTTAGAACATCCAAACCAGCCACAAGCAAGAAGCAGCGAAAAATTGTAACTGCACAATCGCTGATGTTGAGAATGTGCTGGCAAAGTTTATATGGGCTAAAGAAGCACAAAAGAAGATCGAGAAGTTAAAGGAAGAAGGAAAACCTTTACCGACGAGCATTGCCGAGGTAGAAATTTAAATATGTAGTTCCCTGTTGTTGTGTACTGAAGTTTACTGTCATGATTACTTTATCTAGCCAAAAAAGTTGTAATTATTCTATGGATTCATTTCAAAATTCAGTCTTTTCTTTATTACCGGCTAAGACTCGGTTCCTTCTGCTTTTCTACCCCTGAGGACTCGGGGAGAAGGGCTTGGAGCTACTTTTCTCCTGCCTGCTTCCTGCATACTCTTATATTTTTATAAATTCATTTGTTTTTTATTTTAAAAAAAATGTGGCAATGTTAATCTAATCATATTTTTTACAAACCATGTTTATTAGGTCCAGAAACTGGTGGGTTCAAATCCATTGGATCTTGCTAGGTCAAATTTGGCCAAGAGTGGCCAGATAAGCCGGAATGCTCTCTGTCCTTGCGGTTCAAAGAAGAGATATAAACGGTATTTAATTTAGAACCCTTACCTGTTTTCCATTGGTTATTTACTGAATTATAGAATTACCTGAAATGTTTCTTTGTTGAAGTTGCTATTAGTCCTCAACTCATAGCTAAAAGCAAATCAAAACCAGAAAAACGTTGAATCTGTTAGCAAGTAATTTGTGATTATGAAATATGCCCCAAGAGATGCTATGTTATAGATGTGTACATGCTAGGATAGAATTTTCGTTGTTTGACGAGAAACTAATCTCAGGAATGTTAATTATTTTTCCTCCGGCATCTCATTATCTTCCTTTAACCGAAAATTTTATTTATTGCATGATCCCTTTCATGTGTTTATGAAAATGATATTTATCTTATTCACTTTTCCAAATCTCGCTAGATATTTGCTTGAAAGATGTTTGATTGTGGTGCAATTGTTTTTGTTGTTTTTTGAAGGTGCTGCGGGAAGGATCAAACTGTATAA

mRNA sequence

ATGGACAAGATCAAGGGAGTCATCACTGGGAAGAAAAGCCCTCCCGAAGGAACCGAAGTCAGCTCCGAGTCTTTTACTCTCCTCCGGTTTGCTGATGAGTTGAAAAATGCCCGAAGAGTGGGAGCATTCAAGCAATATATAGTGGGAAGAAGTAGTGAAGCAACTTTTGCAGATGCTTTTGAGAAGCAGGAGGCAATTATTCGCTATTTGGGAGGTTTTGATTCCACTGGAGAGGAATACTTACTTTCATTTGTTCGAGTCTCCCCCTTTAGATCCCTGATTGAGGTTTGTAAGAGTATTGAGAAGTTGATGCGGAACCTTTTGTGGGAAGGTGAGGAAGAAGGAAAAGGATTGCACTTGGTCAGGTGGGAGCTCATTGAGAGATCGGTTGCCTCGGGGAGAGTAGAGATTGGGAATTTAAGGTTTCATAACAAAGCTTTGTTAGCTAAATGGTTGTGGCAGTTCTCCTGTGAGTCTAGTTCCCTCTGGGATAGGACCATTGGTAGTAAGTTTGGGCCTCATTCTTTTGAATGGCTGTTGCATGTGGTTAAAGGCACATATCAGAACGTATGGAAGGATATTCCTAAGGACCTCCCTTCTTTCTCTCATTTGGTCCGTTGTGTAGTGTGGGAGGATCGTATTCCTTGGAGTTGTGAGCTTGCAAGAGCTGTTTGGAGTGATTTCTTTCAAACGTTTGGTTTCTTGCTGCCTCATCACAAGGATGCTTATGATATGATTAAGGAGTTCCTCCTCCATCTGCCCTTACGTGAGAAGGATCGTTTTCTTTGGCTTGTTGGGATAGAGTGCTTACATGAAAGTGATAACATCCAAACCAGCCACAAGCAAGAAGCAGCGAAAAATTGTAACTGCACAATCGCTGATGTTGAGAATGTGCTGGCAAAGTTTATATGGGCTAAAGAAGCACAAAAGAAGATCGAGAAGTTAAAGGAAGAAGGAAAACCTTTACCGACGAGCATTGCCGAGGTCCAGAAACTGGTGGGTTCAAATCCATTGGATCTTGCTAGGTCAAATTTGGCCAAGAGTGGCCAGATAAGCCGGAATGCTCTCTGTCCTTGCGGTTCAAAGAAGAGATATAAACGGTGCTGCGGGAAGGATCAAACTGTATAA

Coding sequence (CDS)

ATGGACAAGATCAAGGGAGTCATCACTGGGAAGAAAAGCCCTCCCGAAGGAACCGAAGTCAGCTCCGAGTCTTTTACTCTCCTCCGGTTTGCTGATGAGTTGAAAAATGCCCGAAGAGTGGGAGCATTCAAGCAATATATAGTGGGAAGAAGTAGTGAAGCAACTTTTGCAGATGCTTTTGAGAAGCAGGAGGCAATTATTCGCTATTTGGGAGGTTTTGATTCCACTGGAGAGGAATACTTACTTTCATTTGTTCGAGTCTCCCCCTTTAGATCCCTGATTGAGGTTTGTAAGAGTATTGAGAAGTTGATGCGGAACCTTTTGTGGGAAGGTGAGGAAGAAGGAAAAGGATTGCACTTGGTCAGGTGGGAGCTCATTGAGAGATCGGTTGCCTCGGGGAGAGTAGAGATTGGGAATTTAAGGTTTCATAACAAAGCTTTGTTAGCTAAATGGTTGTGGCAGTTCTCCTGTGAGTCTAGTTCCCTCTGGGATAGGACCATTGGTAGTAAGTTTGGGCCTCATTCTTTTGAATGGCTGTTGCATGTGGTTAAAGGCACATATCAGAACGTATGGAAGGATATTCCTAAGGACCTCCCTTCTTTCTCTCATTTGGTCCGTTGTGTAGTGTGGGAGGATCGTATTCCTTGGAGTTGTGAGCTTGCAAGAGCTGTTTGGAGTGATTTCTTTCAAACGTTTGGTTTCTTGCTGCCTCATCACAAGGATGCTTATGATATGATTAAGGAGTTCCTCCTCCATCTGCCCTTACGTGAGAAGGATCGTTTTCTTTGGCTTGTTGGGATAGAGTGCTTACATGAAAGTGATAACATCCAAACCAGCCACAAGCAAGAAGCAGCGAAAAATTGTAACTGCACAATCGCTGATGTTGAGAATGTGCTGGCAAAGTTTATATGGGCTAAAGAAGCACAAAAGAAGATCGAGAAGTTAAAGGAAGAAGGAAAACCTTTACCGACGAGCATTGCCGAGGTCCAGAAACTGGTGGGTTCAAATCCATTGGATCTTGCTAGGTCAAATTTGGCCAAGAGTGGCCAGATAAGCCGGAATGCTCTCTGTCCTTGCGGTTCAAAGAAGAGATATAAACGGTGCTGCGGGAAGGATCAAACTGTATAA

Protein sequence

MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGGFDSTGEEYLLSFVRVSPFRSLIEVCKSIEKLMRNLLWEGEEEGKGLHLVRWELIERSVASGRVEIGNLRFHNKALLAKWLWQFSCESSSLWDRTIGSKFGPHSFEWLLHVVKGTYQNVWKDIPKDLPSFSHLVRCVVWEDRIPWSCELARAVWSDFFQTFGFLLPHHKDAYDMIKEFLLHLPLREKDRFLWLVGIECLHESDNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV

Homology

[Close]

BLAST of Cla011287 vs. TrEMBL
Match: A0A0A0LWL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573720 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.1e-48
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           +NIQTS KQEAAKNCNCTIA+VEN L+KF+WAKEAQKKIEKLKEEGKPLPT+IAEVQKLV
Sbjct: 133 ENIQTSQKQEAAKNCNCTIAEVENALSKFLWAKEAQKKIEKLKEEGKPLPTNIAEVQKLV 192

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 376
           GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 193 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

[Close]

BLAST of Cla011287 vs. TrEMBL
Match: A0A0A0LWL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573720 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 78/120 (65.00%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 1   MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 60
           MDKIKGVI+GKK+  EGT++SSESFTLLRFADELKNARRVGA KQYIVGRSSEATFADAF
Sbjct: 56  MDKIKGVISGKKNSTEGTDISSESFTLLRFADELKNARRVGALKQYIVGRSSEATFADAF 115

Query: 61  EKQEAIIRYLGGFDSTGEEYLLSFVRVSPFRSLIEVCK----SIEKLMRNLLWEGEEEGK 117
           EKQEAIIRYLGGFDSTGE      ++ S  +   + C      +E  +   LW  E + K
Sbjct: 116 EKQEAIIRYLGGFDSTGEN-----IQTSQKQEAAKNCNCTIAEVENALSKFLWAKEAQKK 170

HSP 2 Score: 183.7 bits (465), Expect = 4.1e-43
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           DN+QTS KQEAAKNCNCTIADVEN LAKF WAK+A KK+EKLKEEGKP+P S+AE+QKL+
Sbjct: 77  DNLQTSQKQEAAKNCNCTIADVENALAKFTWAKQAHKKLEKLKEEGKPIPKSMAELQKLM 136

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 373
           GS P+DLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD
Sbjct: 137 GSTPVDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 175

[Close]

BLAST of Cla011287 vs. TrEMBL
Match: D7TUQ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01400 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 1


Query: 1  MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 60
          MDKIKGV+TGKK+ P+G ++++E FTLLRFA+ELK AR  G FK+++VGRSSEATFADAF
Sbjct: 1  MDKIKGVLTGKKAAPDG-QITTEEFTLLRFANELKAARAAGTFKRFVVGRSSEATFADAF 60

Query: 61 EKQEAIIRYLGGFDSTGE 79
           KQEAIIRYLG FD +G+
Sbjct: 61 GKQEAIIRYLGRFDPSGD 77

HSP 2 Score: 182.6 bits (462), Expect = 9.0e-43
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           +N+QT+ KQEAAK+CNCTIADVEN LAKF WAKEAQKK+EKLKEEGKP+P S AEVQKLV
Sbjct: 113 ENLQTTQKQEAAKHCNCTIADVENALAKFTWAKEAQKKLEKLKEEGKPMPKSFAEVQKLV 172

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 373
           GS PLDLARSNLA++GQISRNALCPCGSKKRYKRCCGKD
Sbjct: 173 GSTPLDLARSNLAQAGQISRNALCPCGSKKRYKRCCGKD 211

[Close]

BLAST of Cla011287 vs. TrEMBL
Match: A0A0B2S951_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_001809 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 51/78 (65.38%), Postives = 66/78 (84.62%), Query Frame = 1


Query: 1   MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 60
           M+K+K VITG+ S P+    +SESF+LLRFADE+KNA+R+GAFK+++VGRSSEATF+ AF
Sbjct: 36  MEKVKNVITGQNSTPQSQGDASESFSLLRFADEMKNAKRIGAFKEFMVGRSSEATFSSAF 95

Query: 61  EKQEAIIRYLGGFDSTGE 79
           +K EAIIR+LG  D TGE
Sbjct: 96  DKYEAIIRFLGALDPTGE 113

HSP 2 Score: 182.6 bits (462), Expect = 9.0e-43
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           +N+QT+ KQEAAK+CNCTIADVEN LAKF WAKEAQKK+EKLKEEGKP+P S AEVQKLV
Sbjct: 113 ENLQTTQKQEAAKHCNCTIADVENALAKFTWAKEAQKKLEKLKEEGKPMPKSFAEVQKLV 172

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 373
           GS PLDLARSNLA++GQISRNALCPCGSKKRYKRCCGKD
Sbjct: 173 GSTPLDLARSNLAQAGQISRNALCPCGSKKRYKRCCGKD 211

[Close]

BLAST of Cla011287 vs. TrEMBL
Match: C6TA76_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G241400 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 51/78 (65.38%), Postives = 66/78 (84.62%), Query Frame = 1


Query: 1   MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 60
           M+K+K VITG+ S P+    +SESF+LLRFADE+KNA+R+GAFK+++VGRSSEATF+ AF
Sbjct: 36  MEKVKNVITGQNSTPQSQGDASESFSLLRFADEMKNAKRIGAFKEFMVGRSSEATFSSAF 95

Query: 61  EKQEAIIRYLGGFDSTGE 79
           +K EAIIR+LG  D TGE
Sbjct: 96  DKYEAIIRFLGALDPTGE 113

HSP 2 Score: 182.6 bits (462), Expect = 9.0e-43
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           +N+Q S KQEAAK CNCTIA+VEN LAKF WAKEAQKKIEKLKEEGKP+P S+AE+QKL+
Sbjct: 112 ENLQVSQKQEAAKQCNCTIAEVENTLAKFTWAKEAQKKIEKLKEEGKPMPKSMAEIQKLM 171

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 373
           GS+PLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD
Sbjct: 172 GSSPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 210

[Close]

BLAST of Cla011287 vs. NCBI nr
Match: gi|659099735|ref|XP_008450751.1| (PREDICTED: uncharacterized protein LOC103492237 [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 1.6e-48
Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           +NIQTS KQEAAKNCNCTIADVEN L+KF+WAKEAQKKIEKLKEEGKPLPTSIAEVQKLV
Sbjct: 133 ENIQTSQKQEAAKNCNCTIADVENALSKFLWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 192

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 376
           GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 193 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

[Close]

BLAST of Cla011287 vs. NCBI nr
Match: gi|659099735|ref|XP_008450751.1| (PREDICTED: uncharacterized protein LOC103492237 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-32
Identity = 79/120 (65.83%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 1   MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 60
           MDKIKGVITGKK+  EGT++SSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF
Sbjct: 56  MDKIKGVITGKKTTTEGTDISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 115

Query: 61  EKQEAIIRYLGGFDSTGEEYLLSFVRVSPFRSLIEVCK----SIEKLMRNLLWEGEEEGK 117
           EKQEAIIRYLGGFD+TGE      ++ S  +   + C      +E  +   LW  E + K
Sbjct: 116 EKQEAIIRYLGGFDATGEN-----IQTSQKQEAAKNCNCTIADVENALSKFLWAKEAQKK 170

HSP 2 Score: 199.5 bits (506), Expect = 1.0e-47
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           +NIQTS KQEAAKNCNCTIA+VEN L+KF+WAKEAQKKIEKLKEEGKPLPT+IAEVQKLV
Sbjct: 133 ENIQTSQKQEAAKNCNCTIAEVENALSKFLWAKEAQKKIEKLKEEGKPLPTNIAEVQKLV 192

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 376
           GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 193 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

[Close]

BLAST of Cla011287 vs. NCBI nr
Match: gi|449435752|ref|XP_004135658.1| (PREDICTED: uncharacterized protein LOC101217561 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 78/120 (65.00%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 1   MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 60
           MDKIKGVI+GKK+  EGT++SSESFTLLRFADELKNARRVGA KQYIVGRSSEATFADAF
Sbjct: 56  MDKIKGVISGKKNSTEGTDISSESFTLLRFADELKNARRVGALKQYIVGRSSEATFADAF 115

Query: 61  EKQEAIIRYLGGFDSTGEEYLLSFVRVSPFRSLIEVCK----SIEKLMRNLLWEGEEEGK 117
           EKQEAIIRYLGGFDSTGE      ++ S  +   + C      +E  +   LW  E + K
Sbjct: 116 EKQEAIIRYLGGFDSTGEN-----IQTSQKQEAAKNCNCTIAEVENALSKFLWAKEAQKK 170

HSP 2 Score: 183.7 bits (465), Expect = 5.8e-43
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           DN+QTS KQEAAKNCNCTIADVEN LAKF WAK+A KK+EKLKEEGKP+P S+AE+QKL+
Sbjct: 129 DNLQTSQKQEAAKNCNCTIADVENALAKFTWAKQAHKKLEKLKEEGKPIPKSMAELQKLM 188

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 373
           GS P+DLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD
Sbjct: 189 GSTPVDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 227

[Close]

BLAST of Cla011287 vs. NCBI nr
Match: gi|225451203|ref|XP_002274439.1| (PREDICTED: uncharacterized protein LOC100260646 [Vitis vinifera])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 1


Query: 1   MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 60
           MDKIKGV+TGKK+ P+G ++++E FTLLRFA+ELK AR  G FK+++VGRSSEATFADAF
Sbjct: 53  MDKIKGVLTGKKAAPDG-QITTEEFTLLRFANELKAARAAGTFKRFVVGRSSEATFADAF 112

Query: 61  EKQEAIIRYLGGFDSTGE 79
            KQEAIIRYLG FD +G+
Sbjct: 113 GKQEAIIRYLGRFDPSGD 129

HSP 2 Score: 183.7 bits (465), Expect = 5.8e-43
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           DN+QTS KQEAAKNCNCTIADVEN LAKF WAK+A KK+EKLKEEGKP+P S+AE+QKL+
Sbjct: 77  DNLQTSQKQEAAKNCNCTIADVENALAKFTWAKQAHKKLEKLKEEGKPIPKSMAELQKLM 136

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 373
           GS P+DLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD
Sbjct: 137 GSTPVDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 175

[Close]

BLAST of Cla011287 vs. NCBI nr
Match: gi|298204926|emb|CBI34233.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 1


Query: 1  MDKIKGVITGKKSPPEGTEVSSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAF 60
          MDKIKGV+TGKK+ P+G ++++E FTLLRFA+ELK AR  G FK+++VGRSSEATFADAF
Sbjct: 1  MDKIKGVLTGKKAAPDG-QITTEEFTLLRFANELKAARAAGTFKRFVVGRSSEATFADAF 60

Query: 61 EKQEAIIRYLGGFDSTGE 79
           KQEAIIRYLG FD +G+
Sbjct: 61 GKQEAIIRYLGRFDPSGD 77

HSP 2 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 274 DNIQTSHKQEAAKNCNCTIADVENVLAKFIWAKEAQKKIEKLKEEGKPLPTSIAEVQKLV 333
           +N+QT+ KQEAAK+CNCTIADVEN LAKF WAKEAQKK+EKLKEEGKP+P S AEVQKLV
Sbjct: 113 ENLQTTQKQEAAKHCNCTIADVENALAKFTWAKEAQKKLEKLKEEGKPMPKSFAEVQKLV 172

Query: 334 GSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 373
           GS PLDLARSNLA++GQISRNALCPCGSKKRYKRCCGKD
Sbjct: 173 GSTPLDLARSNLAQAGQISRNALCPCGSKKRYKRCCGKD 211

The following BLAST results are available for this feature:

BLAST of Cla011287 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWL6_CUCSA	7.1e-48	93.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573720 PE=4 SV=1	[more]
A0A0A0LWL6_CUCSA	1.6e-31	65.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573720 PE=4 SV=1	[more]
D7TUQ8_VITVI	1.1e-21	70.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01400 PE=4 SV=...	[more]
A0A0B2S951_GLYSO	1.3e-20	65.38	Uncharacterized protein OS=Glycine soja GN=glysoja_001809 PE=4 SV=1	[more]
C6TA76_SOYBN	1.3e-20	65.38	Uncharacterized protein OS=Glycine max GN=GLYMA_19G241400 PE=2 SV=1	[more]

BLAST of Cla011287 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099735\|ref\|XP_008450751.1\|	1.6e-48	95.10	PREDICTED: uncharacterized protein LOC103492237 [Cucumis melo]	[more]
gi\|659099735\|ref\|XP_008450751.1\|	3.5e-32	65.83	PREDICTED: uncharacterized protein LOC103492237 [Cucumis melo]	[more]
gi\|449435752\|ref\|XP_004135658.1\|	2.3e-31	65.00	PREDICTED: uncharacterized protein LOC101217561 [Cucumis sativus]	[more]
gi\|225451203\|ref\|XP_002274439.1\|	1.6e-21	70.51	PREDICTED: uncharacterized protein LOC100260646 [Vitis vinifera]	[more]
gi\|298204926\|emb\|CBI34233.3\|	1.6e-21	70.51	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004027	SEC_C_motif

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU08076	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU40855	watermelon EST collection version 2.0	transcribed_cluster
WMU49740	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011287	Cla011287.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU08076	WMU08076	transcribed_cluster
WMU49740	WMU49740	transcribed_cluster
WMU40855	WMU40855	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004027	SEC-C motif	PFAM	PF02810	SEC-C	coord: 353..371 score: 1.
None	No IPR available	PANTHER	PTHR36750	FAMILY NOT NAMED	coord: 274..375 score: 3.6
None	No IPR available	PANTHER	PTHR36750:SF1	SUBFAMILY NOT NAMED	coord: 274..375 score: 3.6
None	No IPR available	unknown	SSF103642	Sec-C motif	coord: 351..371 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla011287	Cla97C03G066650	Watermelon (97103) v2	wmwmbB125
Cla011287	Csa1G573720	Cucumber (Chinese Long) v2	cuwmB020
Cla011287	MELO3C015384	Melon (DHL92) v3.5.1	mewmB271
Cla011287	ClCG03G016340	Watermelon (Charleston Gray)	wcgwmB224
Cla011287	CSPI01G27310	Wild cucumber (PI 183967)	cpiwmB022
Cla011287	Cucsa.289060	Cucumber (Gy14) v1	cgywmB531
Cla011287	CmaCh11G009910	Cucurbita maxima (Rimu)	cmawmB102
Cla011287	CmoCh11G010090	Cucurbita moschata (Rifu)	cmowmB092
Cla011287	Lsi06G001960	Bottle gourd (USVL1VR-Ls)	lsiwmB396
Cla011287	Cp4.1LG04g01850	Cucurbita pepo (Zucchini)	cpewmB649
Cla011287	CsGy1G026520	Cucumber (Gy14) v2	cgybwmB022
Cla011287	MELO3C015384.2	Melon (DHL92) v3.6.1	medwmB262
Cla011287	Carg16489	Silver-seed gourd	carwmB0911
Cla011287	CsaV3_1G039620	Cucumber (Chinese Long) v3	cucwmB025
Cla011287	Bhi02G001660	Wax gourd	wgowmB653

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011287	Cucurbita moschata (Rifu)	cmowmB047
Cla011287	Cucurbita pepo (Zucchini)	cpewmB359