Lsi06G001960 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G001960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein translocase subunit SecA
Location	chr06 : 2145551 .. 2150779 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGGCCCGAATATTTGCCGTGAAGCCTCCGGATTGACTAAAACCCTAAACACCAACCGGAAGAAGCCGATAATCAGAACTCTTGTTTTCCCAAAATGCGTTCTTCCTCTCGAGCATTGATCATTTTTTCCAAGAAAAGCACTTGGAAGCCAAATTTGTTCTTTCCCTTTTCTTCTTCCGATCACAGTCCTCGTAACTGTTATTTGACTCCCTTACAGTCCCGATCCATCTTTTCCACGACTCAGCTTCATGGTTCATGGATGGACAAGATCAAGGGAGTCATCGGTGGGAAGAAAAGCGCTTCTGAAGGAACCGAGATCAGCTCCGAGTCCTTTACTCTCCTCCGTACGCCTCATTTCCTATCACTTGCAGTTGCATTTCAATTGCACGATTTTATTCATAAACATGGCGACAGATTCGTCATTTTAAAATTTTTTATCTATTTATTTTTCTCAGGGTTTGCTGATGAGTTGAAAAATGCCCGAAGAGTGGGAGCATTTAAGCAATATATAGTAGGACGAAGTAGTGAAGCAACTTTTGCAGATGCTTTTGAGAAGCAGGAAGCAATTATTCGTTATTTGGGAGGTTTTGATTCCACTGGAGAGGTTGGTTTATTTTTTATTTTTCTTCAATTTGTTTCAACTACAATACTTATTTGTTTGAATTTTAGCGGGGAAGTCATTATGTCTGCTCGTAACGTAATCGTACCGTCCATGTTTGGAGTATTCTAATCTTTACTATCATCTCCATAGATAAAGTCGAAACAAGTGAAGAGAAAAAGGACAATGAGATTAGTTAGTTTAGGAAAAATTTTGGATTGTGTAATGTGTATTTTACTGCTGAACAATTCCACCTGCCTCTGTTTTTTTTTTTCATTCTGCGGATTGAAAACATCTGAACGGGGTCTCCTTTTTCAGTTTTCTTTTTCTTCTCTCAAGCTCCCGACACCGGAAAAAAAAAAAAACTGACTTTCTGTATTTACTTTTTGCATGAAACAAAATTTCATTAATTCAATGAAGTATAGGAAAAGGGAAAGAAAGCTTTCACTGAGCCTAATGTTTTGTTAGCCTAATGGTTGCCTTGGAGGGTTTAGAGATTGGGAATTTAAGGTTCCATTATAAAACTTTGTTAGCCTAATGGTTGTGGCGGTTCTCCCTTAAGTCTAATTCTCTTTAGGATAGGATCATTGCTAGTAAGTTTGGGCCTCATCCTTTTGAATGGTTATCGCATGGAGATGGGGTTAAAGGCACATATCAAAACTTATGGAAGGATATTCCTAAGGTCCCTTTTTTCTCTCATTTGGTCTGTTGTGTGGTGTTTTGTTTGGGGGGGGGGGGGGGGGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCACTTATCTTCCTATATAATTCTTGTGGCATTCGATTTTTTAGTTTGATCGGGAGCTTCTTGTCCCTTTCGTTTGATTTTTGTTACTTTTTGTCTGATAGGGAAGCGATGGATGTGGCCTCTCTTTTGGTCTTGCATGAGGGGGGCTGTCTTTAGACAAAGAAGAAAGGATGCTAGGGTGTGGAGTCCCAATCCTTTGGAGTGATTCTCGTGTAATTCTTTCTTTCGTAGTTGTCTTGATCTTTCTCGTTTAGGTTAGTCGGTTTTTTCTGCTCTAGAGGATTAAGATTCCTAGGAAAGTTAAGTTCTTTGCCTGATAAGTTTTACATGGAAGAGCTAACACTTTGGATTGGCTTTTGAGGAAGATTTCATTGTTAGTTGGTCCATTTTGCAGCATTCCTTGTTGAAAGGTAGAGGAAGACTTGGATCACATTCTTTGGAGTTGTGAGTTCACGAGAGCTATTTGGCATGACTTCTTTCAGACATTTGGTTTCTTGCCAACTTGTCACAAAGATCCTTATGATATGATCAGGGAGTTCAACCATCATGGATTGACCTAGTGGTGAATAAAGGACATGACTTTGGTAGAGGTTATGGGTTCAATCCATGGTGGCCACCTACTTAGGATTTAATATCCTACAAGTTTCCTTGACACCAAAATGTTATAGGGTTAGGCGGGTTGTCCAAAAGGAAAAAAAATATATGATCAGAAAGTTCCTCTGATCATCTGGCCTTACGTGAGAAGGGTCGTTTTCTTTGGCTTTTAGGGTGTGTGCTATTTTGTGGGATCTTGGGGAGAGAGGAAAGGGACCCTAGTGATGTTTGGTCCTTTGTTAGATCTCAACGTTTCCCTCTGTGCTTCGATTTAGAAGATCTTTTGTAATTATTCTATAGGTTTTATTTTGCATAGTTGGGGCCCATTCTTTTAATTGGGCTCCTATTTTGTGGGCTTTGGTGTTTTTTTTGTATGCCCGTGTATTCTATCATTTCTTTTTCAATGAAAGTTGTTATTATCCACACAAAAAAAAAGAAAAAAAAATGAAAATCATATAGAGATTCATTATCTGAGGGTCTATGTGAAGCAATTTTGAAGACTTTCATTTGTCAAAGGGTTCTTTTTTTTTCAAGACATTTCTCTTGCATTTTTCTTTCTTTTGTTATAAACTTATACATCTCACTCCTTTTCGGGGTTTGTATCCTTTGAGGAAAAGGTGCTTTTCTCCAGACATTTCTTTTGTAATTACTTAGCTAAAATTTGAGGTAATTGAATCTCCCTCCTTGAAATCTCTCTCAAGCCCTAATTCACTCACCAAAATATCGCATGTCTCCTCTTTTCTCACTCACTGTATTTATAACCAAACTTCCCCAATAAACTCAACTAATTACTAACATACCCTTAAGAACTACGAACATCTCCATTTCTATCCTACTAGATTCCTATCACGAGTTTAAGAAAAAACTAGCTAGGTTCCTTTTAGTGTTCTTTCACTTTCTTAAAAAATAAATAAATGTGTTCTGCATTCCGCATTCTCTAATCTTTATTTATATCCAACAGTTTCCATATTAATTTGCGCTTCTGGATAAGTTCTCTGATTGTGATCTTAGGCTTCCTGATATTTAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAATTGTAACTGCACGATCGCTGATGTTGAGAATGTGCTGGCGAAATTTATGTGGGCTAAAGAAGCACAAAAGAAGATCGAGAAGTTAAAGGAAGAAGGAAAACCTTTGCCGACAAGCATTGCCGAGGTAGAAATTTAAATATGTAGTTCCCTGTTGTTAAGAACTGAAGTTTACTGTCATGGTTACTTATCTAGCCAAAAAAATGTAATTATTTTATGGATTCATTACAAAATTCTGTCTTTTCTTTATTACTGACCGAGCCTCAGTTTCTTCTGCTTTTATACCCCTGAAGGGCTTGGAGCTTCTTTTCTCCTGCCTCCTGCTTCTTGCATACTCTAATAATTTTATAAATATATGTTTCTTTCTTAAAAAAATGTGACAATGCTCAACTAATCATATCTTTTACAAACTATGTTTATTAGGTCCAGAAACTGGTGGGTTCAAATCCATTGGATCTTGCTAGGTCAAATTTGGCCAAGAGTGGCCAGATAAGCCGGAATGCTCTCTGTCCTTGCGGTTCAAAGAAGAGATATAAACGGTATTTAATTTAGAACCCTTACCTGTTTTCCATTGGTTATTTACTGAATTATAGTATTACCTAAAATGTTTCTTTGTTGAACTTGCTTTTAGTCCTCAATTCATAGCTAAAAACAAATCAAAACCAGAGAATCTGTTGGCGAGCAATTTGTGATTATGAAATATACCCCAAGAGTTGCTATGCTATAGATGAGTACATGCTAGGATAGAGTTTTCGTTGTTTGATGAGAAACTAATCTCAGGAATGTTAATTATTTTTCCTCCGGCATCTCATTATCTTCCTTTAACCGAAAATTTTATTTAGTGAGATGATCCCTGTCACGTGTTTATGAAATGATAATGATATTATTATTCACTTTTCCAAAGCTCGTTAAATATTTGGTTGAAAGATGTTTGATTAGTGCAATTGTCTTTGTTGTTTTGAAGGTGCTGCGGGAAGGATCAAACTGTATAAGAAGAGAACTTGCATGTGCCTTCTTTTTTTTTTTGCATGAATAATTGACAATGTATAAGAAATCTTTTGGATTGGTCATTCTATTATGATACCCTGAGCTAGGGTGAGCTAGGGGTAGGAACCACAGCGAGCTTACTTTTCGAACTGTTGAACCAAGAAGAGGGAAGAGCCTCAGTCATTATGTTTGTCAGCTGTTCTTCAGAGGGAACGAATCGAACACAGAGTTGCTTGTTGGCTATGTTTTCTTTAATAATATGGTTATCAAGTTTGATGTGTTTGGTGCGATTATGAACAGGGTTGGCTGCAATATAAATAGTACTCAGGTTATTGCAAAGCAGAAGAGGAGCAAGGTTTTCGAAACTCGATAAGGATTTGATCTCATTCAGCAGCAACATTAACCATCCCTCTATACTCCGATTCTGCACTTAACGAAACACTACTTTCAGCTTAGATGCATTCCACGAGACCAGACTTGAACCAAAGAATACACAGAAGCCACTTGACTTCTACAGTAATCAAGGCAGCTTGTCCAATTAGTGTCGGTGTAACAAGTTAAAGCACCAAAACTGAACCATTTTTAAAGCTGAAAAAATGCAGTTCGGTCTGGTTTGAAGACATTTTGAAACCCAATTGTTTAGTTCAGTTCGATTTCAATTTTAAAAACTGAATTTGAAACTGAATCGAACCATTTTTAACTTTTATATATATAGATATAAAAATTGAGTATAA

mRNA sequence

TCCGGCCCGAATATTTGCCGTGAAGCCTCCGGATTGACTAAAACCCTAAACACCAACCGGAAGAAGCCGATAATCAGAACTCTTGTTTTCCCAAAATGCGTTCTTCCTCTCGAGCATTGATCATTTTTTCCAAGAAAAGCACTTGGAAGCCAAATTTGTTCTTTCCCTTTTCTTCTTCCGATCACAGTCCTCGTAACTGTTATTTGACTCCCTTACAGTCCCGATCCATCTTTTCCACGACTCAGCTTCATGGTTCATGGATGGACAAGATCAAGGGAGTCATCGGTGGGAAGAAAAGCGCTTCTGAAGGAACCGAGATCAGCTCCGAGTCCTTTACTCTCCTCCGGTTTGCTGATGAGTTGAAAAATGCCCGAAGAGTGGGAGCATTTAAGCAATATATAGTAGGACGAAGTAGTGAAGCAACTTTTGCAGATGCTTTTGAGAAGCAGGAAGCAATTATTCGTTATTTGGGAGGTTTTGATTCCACTGGAGAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAATTGTAACTGCACGATCGCTGATGTTGAGAATGTGCTGGCGAAATTTATGTGGGCTAAAGAAGCACAAAAGAAGATCGAGAAGTTAAAGGAAGAAGGAAAACCTTTGCCGACAAGCATTGCCGAGGTCCAGAAACTGGTGGGTTCAAATCCATTGGATCTTGCTAGGTCAAATTTGGCCAAGAGTGGCCAGATAAGCCGGAATGCTCTCTGTCCTTGCGGTTCAAAGAAGAGATATAAACGGTGCTGCGGGAAGGATCAAACTGTATAAGAAGAGAACTTGCATGTGCCTTCTTTTTTTTTTTGCATGAATAATTGACAATGTATAAGAAATCTTTTGGATTGGTCATTCTATTATGATACCCTGAGCTAGGGTGAGCTAGGGGTAGGAACCACAGCGAGCTTACTTTTCGAACTGTTGAACCAAGAAGAGGGAAGAGCCTCAGTCATTATGTTTGTCAGCTGTTCTTCAGAGGGAACGAATCGAACACAGAGTTGCTTGTTGGCTATGTTTTCTTTAATAATATGGTTATCAAGTTTGATGTGTTTGGTGCGATTATGAACAGGGTTGGCTGCAATATAAATAGTACTCAGGTTATTGCAAAGCAGAAGAGGAGCAAGGTTTTCGAAACTCGATAAGGATTTGATCTCATTCAGCAGCAACATTAACCATCCCTCTATACTCCGATTCTGCACTTAACGAAACACTACTTTCAGCTTAGATGCATTCCACGAGACCAGACTTGAACCAAAGAATACACAGAAGCCACTTGACTTCTACAGTAATCAAGGCAGCTTGTCCAATTAGTGTCGGTGTAACAAGTTAAAGCACCAAAACTGAACCATTTTTAAAGCTGAAAAAATGCAGTTCGGTCTGGTTTGAAGACATTTTGAAACCCAATTGTTTAGTTCAGTTCGATTTCAATTTTAAAAACTGAATTTGAAACTGAATCGAACCATTTTTAACTTTTATATATATAGATATAAAAATTGAGTATAA

Coding sequence (CDS)

ATGCGTTCTTCCTCTCGAGCATTGATCATTTTTTCCAAGAAAAGCACTTGGAAGCCAAATTTGTTCTTTCCCTTTTCTTCTTCCGATCACAGTCCTCGTAACTGTTATTTGACTCCCTTACAGTCCCGATCCATCTTTTCCACGACTCAGCTTCATGGTTCATGGATGGACAAGATCAAGGGAGTCATCGGTGGGAAGAAAAGCGCTTCTGAAGGAACCGAGATCAGCTCCGAGTCCTTTACTCTCCTCCGGTTTGCTGATGAGTTGAAAAATGCCCGAAGAGTGGGAGCATTTAAGCAATATATAGTAGGACGAAGTAGTGAAGCAACTTTTGCAGATGCTTTTGAGAAGCAGGAAGCAATTATTCGTTATTTGGGAGGTTTTGATTCCACTGGAGAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAATTGTAACTGCACGATCGCTGATGTTGAGAATGTGCTGGCGAAATTTATGTGGGCTAAAGAAGCACAAAAGAAGATCGAGAAGTTAAAGGAAGAAGGAAAACCTTTGCCGACAAGCATTGCCGAGGTCCAGAAACTGGTGGGTTCAAATCCATTGGATCTTGCTAGGTCAAATTTGGCCAAGAGTGGCCAGATAAGCCGGAATGCTCTCTGTCCTTGCGGTTCAAAGAAGAGATATAAACGGTGCTGCGGGAAGGATCAAACTGTATAA

Protein sequence

MRSSSRALIIFSKKSTWKPNLFFPFSSSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIKGVIGGKKSASEGTEISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVLAKFMWAKEAQKKIEKLKEEGKPLPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV

Homology

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BLAST of Lsi06G001960 vs. TrEMBL
Match: A0A0A0LWL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573720 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 1.1e-118
Identity = 216/234 (92.31%), Postives = 227/234 (97.01%), Query Frame = 1


Query: 1   MRSSSRALIIFSKKSTWKPNLFFPFSSSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIK 60
           MRSSSRALI FSK++TW PNLFFPFSSSDH+P NCYLT LQSRSIFSTTQLHGSWMDKIK
Sbjct: 1   MRSSSRALINFSKRTTWNPNLFFPFSSSDHNPHNCYLTLLQSRSIFSTTQLHGSWMDKIK 60

Query: 61  GVIGGKKSASEGTEISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GVI GKK+++EGT+ISSESFTLLRFADELKNARRVGA KQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GVISGKKNSTEGTDISSESFTLLRFADELKNARRVGALKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVLAKFMWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDSTGENIQTSQKQEAAKNCNCTIA+VEN L+KF+WAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDSTGENIQTSQKQEAAKNCNCTIAEVENALSKFLWAKEAQKKIEKLKEEGKP 180

Query: 181 LPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 235
           LPT+IAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 181 LPTNIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

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BLAST of Lsi06G001960 vs. TrEMBL
Match: M5VZX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010950mg PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 3.3e-83
Identity = 165/233 (70.82%), Postives = 188/233 (80.69%), Query Frame = 1


Query: 1   MRSSSRALIIFSKKSTWKPNLFFPFSSSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIK 60
           M +SSR L      +  K N     S   +S  +C+L PL  RSIFSTT L  SW++KIK
Sbjct: 1   MHNSSRIL----SNTLCKKNSNLLLSFIGYSYNDCHLAPLFCRSIFSTTHLDNSWVNKIK 60

Query: 61  GVIGGKKSASEGTEISS--ESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQ 120
           GV  G K++S+ T   S  ESFTLLRFADE+KNARR+GAFKQYIVGRSSEATFADAFEKQ
Sbjct: 61  GVFTGNKTSSDETNPGSSPESFTLLRFADEMKNARRIGAFKQYIVGRSSEATFADAFEKQ 120

Query: 121 EAIIRYLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVLAKFMWAKEAQKKIEKLKEEG 180
           EAIIRYLGGFDSTGEN+  +QKQEAAK+CNCTIADVEN LAKF WA+EAQKK+E L++EG
Sbjct: 121 EAIIRYLGGFDSTGENLNVTQKQEAAKHCNCTIADVENALAKFTWAREAQKKMENLQKEG 180

Query: 181 KPLPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 232
           KP+P +I EVQKL+GS P DLA+SNLAKSGQISRNALCPCGSKKRYKRCCGKD
Sbjct: 181 KPMPKNINEVQKLMGSTPFDLAKSNLAKSGQISRNALCPCGSKKRYKRCCGKD 229

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BLAST of Lsi06G001960 vs. TrEMBL
Match: A0A061F3F5_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026433 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.3e-83
Identity = 162/229 (70.74%), Postives = 186/229 (81.22%), Query Frame = 1


Query: 4   SSRALIIFSKKSTWKPNLFFPFSSSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIKGVI 63
           SSR L   SK+     +    ++  +H     +L   Q RSIF+T+ +H SWMD IKGV 
Sbjct: 3   SSRILNNISKRMPSSSSFSLGYAYPEH-----HLVLPQHRSIFTTSPVHASWMDSIKGVF 62

Query: 64  GGKKSASEGTEISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIR 123
            GKK++++  + S+ESFTLLRFADELKNAR++G FKQYIVGRSSEATFADAFEKQEAIIR
Sbjct: 63  TGKKTSTDDPKTSAESFTLLRFADELKNARKLGTFKQYIVGRSSEATFADAFEKQEAIIR 122

Query: 124 YLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVLAKFMWAKEAQKKIEKLKEEGKPLPT 183
           YLGG D TGEN+QTSQK+EAAK C+CTIADVEN LAKF WAKEA KK+ KLK EGKP+P 
Sbjct: 123 YLGGCDPTGENLQTSQKKEAAKQCDCTIADVENALAKFTWAKEAHKKMAKLKAEGKPMPK 182

Query: 184 SIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQ 233
           SIAEVQKL+GS PLDLARSN+AKSGQISRNALCPCGSKKRYKRCCGKDQ
Sbjct: 183 SIAEVQKLMGSTPLDLARSNMAKSGQISRNALCPCGSKKRYKRCCGKDQ 226

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BLAST of Lsi06G001960 vs. TrEMBL
Match: V4V388_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002483mg PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.4e-81
Identity = 155/198 (78.28%), Postives = 170/198 (85.86%), Query Frame = 1


Query: 34  NCYLTPLQSRSIFSTTQLHGSWMDKIKGVIGGKKSASEGTEISSESFTLLRFADELKNAR 93
           N +LT  Q RSIF+T  L GSWMD IKGV  GKKS+SE   +SSESFTLLRFADELK AR
Sbjct: 13  NHHLTLSQYRSIFTTRTLQGSWMDSIKGVFTGKKSSSEDGSVSSESFTLLRFADELKKAR 72

Query: 94  RVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGGFDSTGENIQTSQKQEAAKNCNCTIAD 153
           ++G  KQYIVGRSS  TFAD FEKQEA++R LG FD  GEN+Q SQKQEAAK CNCTIA+
Sbjct: 73  KLGTLKQYIVGRSSATTFADTFEKQEAVLRCLGAFDPNGENLQVSQKQEAAKQCNCTIAE 132

Query: 154 VENVLAKFMWAKEAQKKIEKLKEEGKPLPTSIAEVQKLVGSNPLDLARSNLAKSGQISRN 213
           VEN LAKF WAKEAQKKIEKLKEEGKP+P S+AE+QKL+GS+PLDLARSNLAKSGQISRN
Sbjct: 133 VENTLAKFTWAKEAQKKIEKLKEEGKPMPKSMAEIQKLMGSSPLDLARSNLAKSGQISRN 192

Query: 214 ALCPCGSKKRYKRCCGKD 232
           ALCPCGSKKRYKRCCGKD
Sbjct: 193 ALCPCGSKKRYKRCCGKD 210

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BLAST of Lsi06G001960 vs. TrEMBL
Match: A0A059D2G7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01740 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80
Identity = 148/193 (76.68%), Postives = 171/193 (88.60%), Query Frame = 1


Query: 39  PLQSRSIFSTTQLHGSWMDKIKGVIGGKKSASEGTEISSESFTLLRFADELKNARRVGAF 98
           PL  RSI ST  L  SWMDKIKGV  GKK++ E   +++ESFTLLRFAD++KNARR+G F
Sbjct: 29  PLSRRSISSTAMLQNSWMDKIKGVFAGKKTSPEEAPVAAESFTLLRFADQMKNARRLGTF 88

Query: 99  KQYIVGRSSEATFADAFEKQEAIIRYLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVL 158
           K+Y+VGRSSEATFADAFEKQEAI+RYLGG D +GE++QT+QKQEAAKNCNC+IADVEN L
Sbjct: 89  KKYMVGRSSEATFADAFEKQEAILRYLGGLDPSGEHLQTNQKQEAAKNCNCSIADVENAL 148

Query: 159 AKFMWAKEAQKKIEKLKEEGKPLPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPC 218
           AKF WAKEA+ K+ KLKEEGKP+P S+AEVQKL+GS PLD+ARSNLAKSGQISRNA+CPC
Sbjct: 149 AKFTWAKEAENKLMKLKEEGKPMPKSLAEVQKLMGSTPLDVARSNLAKSGQISRNAMCPC 208

Query: 219 GSKKRYKRCCGKD 232
           GSKKRYKRCCGKD
Sbjct: 209 GSKKRYKRCCGKD 221

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BLAST of Lsi06G001960 vs. TAIR10
Match: AT3G04950.1 (AT3G04950.1 SEC-C motif (InterPro:IPR004027))

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-75
Identity = 140/192 (72.92%), Postives = 161/192 (83.85%), Query Frame = 1


Query: 41  QSRSIFSTTQLHGSWMDKIKGVIGGKKSAS-EGTEISSESFTLLRFADELKNARRVGAFK 100
           Q RSI ST  L+G WMD IKGV  G K    E + +  E+FTLLRFADELKNARR+G FK
Sbjct: 41  QQRSITSTAPLNG-WMDSIKGVFTGNKDTPLEESNLPVEAFTLLRFADELKNARRLGKFK 100

Query: 101 QYIVGRSSEATFADAFEKQEAIIRYLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVLA 160
           QYIVGRSSEATFADAFEKQEA+IRYLG  D+TGEN+Q SQKQ+AAK+C CTI DVEN L+
Sbjct: 101 QYIVGRSSEATFADAFEKQEAVIRYLGALDATGENLQASQKQDAAKHCKCTITDVENTLS 160

Query: 161 KFMWAKEAQKKIEKLKEEGKPLPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCG 220
           KF WA++A KK+ +LKE GKPLP ++ E+QK++GS P+DLARSNLAKSGQISRNALCPCG
Sbjct: 161 KFTWARQAHKKMTELKEGGKPLPKNMGELQKMMGSTPMDLARSNLAKSGQISRNALCPCG 220

Query: 221 SKKRYKRCCGKD 232
           SKKRYKRCCGKD
Sbjct: 221 SKKRYKRCCGKD 231

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BLAST of Lsi06G001960 vs. NCBI nr
Match: gi|449435752|ref|XP_004135658.1| (PREDICTED: uncharacterized protein LOC101217561 [Cucumis sativus])

HSP 1 Score: 434.1 bits (1115), Expect = 1.5e-118
Identity = 216/234 (92.31%), Postives = 227/234 (97.01%), Query Frame = 1


Query: 1   MRSSSRALIIFSKKSTWKPNLFFPFSSSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIK 60
           MRSSSRALI FSK++TW PNLFFPFSSSDH+P NCYLT LQSRSIFSTTQLHGSWMDKIK
Sbjct: 1   MRSSSRALINFSKRTTWNPNLFFPFSSSDHNPHNCYLTLLQSRSIFSTTQLHGSWMDKIK 60

Query: 61  GVIGGKKSASEGTEISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GVI GKK+++EGT+ISSESFTLLRFADELKNARRVGA KQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GVISGKKNSTEGTDISSESFTLLRFADELKNARRVGALKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVLAKFMWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDSTGENIQTSQKQEAAKNCNCTIA+VEN L+KF+WAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDSTGENIQTSQKQEAAKNCNCTIAEVENALSKFLWAKEAQKKIEKLKEEGKP 180

Query: 181 LPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 235
           LPT+IAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 181 LPTNIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

[Close]

BLAST of Lsi06G001960 vs. NCBI nr
Match: gi|659099735|ref|XP_008450751.1| (PREDICTED: uncharacterized protein LOC103492237 [Cucumis melo])

HSP 1 Score: 433.0 bits (1112), Expect = 3.4e-118
Identity = 217/234 (92.74%), Postives = 225/234 (96.15%), Query Frame = 1


Query: 1   MRSSSRALIIFSKKSTWKPNLFFPFSSSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIK 60
           MRSSSRALI  SKK+TW PNLFFP SSSDH+P NCYLT LQSRSIFSTTQLHGSWMDKIK
Sbjct: 1   MRSSSRALIKLSKKTTWNPNLFFPVSSSDHNPHNCYLTLLQSRSIFSTTQLHGSWMDKIK 60

Query: 61  GVIGGKKSASEGTEISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GVI GKK+ +EGT+ISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GVITGKKTTTEGTDISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVLAKFMWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFD+TGENIQTSQKQEAAKNCNCTIADVEN L+KF+WAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDATGENIQTSQKQEAAKNCNCTIADVENALSKFLWAKEAQKKIEKLKEEGKP 180

Query: 181 LPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 235
           LPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 181 LPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

[Close]

BLAST of Lsi06G001960 vs. NCBI nr
Match: gi|1009117737|ref|XP_015875477.1| (PREDICTED: protein translocase subunit SecA isoform X1 [Ziziphus jujuba])

HSP 1 Score: 326.2 bits (835), Expect = 4.5e-86
Identity = 169/210 (80.48%), Postives = 183/210 (87.14%), Query Frame = 1


Query: 21  LFFPFSSSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIKGVIGGKKSASEGTEISSESF 80
           LF  FS S  +  +C       RSIF T QL  SWMDKIKGVI GKK++ E T ISS+SF
Sbjct: 20  LFSSFSFSAFASSHC-------RSIFYTAQLQNSWMDKIKGVITGKKTSQEDTLISSDSF 79

Query: 81  TLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGGFDSTGENIQTSQK 140
           TLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGG DSTGENIQTSQK
Sbjct: 80  TLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGGLDSTGENIQTSQK 139

Query: 141 QEAAKNCNCTIADVENVLAKFMWAKEAQKKIEKLKEEGKPLPTSIAEVQKLVGSNPLDLA 200
           QEAAK+CNC+IADVEN L+KFMWA+EAQKK+E LK+EGKP+P SIAEVQKL+GS+PLDLA
Sbjct: 140 QEAAKHCNCSIADVENALSKFMWAREAQKKLESLKKEGKPMPKSIAEVQKLMGSSPLDLA 199

Query: 201 RSNLAKSGQISRNALCPCGSKKRYKRCCGK 231
           RSNLAKSGQISRNALCPCGSKKRYK CCGK
Sbjct: 200 RSNLAKSGQISRNALCPCGSKKRYKWCCGK 222

[Close]

BLAST of Lsi06G001960 vs. NCBI nr
Match: gi|645222458|ref|XP_008218173.1| (PREDICTED: uncharacterized protein LOC103318555 [Prunus mume])

HSP 1 Score: 322.4 bits (825), Expect = 6.5e-85
Identity = 167/233 (71.67%), Postives = 190/233 (81.55%), Query Frame = 1


Query: 1   MRSSSRALIIFSKKSTWKPNLFFPFSSSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIK 60
           M  SSR L      +  K N     S +DHS  +C+L PL  RSIFSTT L  SW++KIK
Sbjct: 1   MHHSSRIL----SNTLCKKNSNLLLSFTDHSYNDCHLAPLFCRSIFSTTHLDNSWVNKIK 60

Query: 61  GVIGGKKSASEGTEISS--ESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQ 120
           GV  G K++S+ T+  S  ESFTLLRFADE+KNARR+GAFKQYIVGRSSEATFADAFEKQ
Sbjct: 61  GVFTGNKTSSDDTKPGSGPESFTLLRFADEMKNARRIGAFKQYIVGRSSEATFADAFEKQ 120

Query: 121 EAIIRYLGGFDSTGENIQTSQKQEAAKNCNCTIADVENVLAKFMWAKEAQKKIEKLKEEG 180
           EAIIRYLGGFDSTGEN+  +QKQEAAK+CNCTIADVEN LAKF WA+EAQKK+E L++EG
Sbjct: 121 EAIIRYLGGFDSTGENLNVTQKQEAAKHCNCTIADVENALAKFTWAREAQKKMENLQKEG 180

Query: 181 KPLPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 232
           KP+P +I EVQKL+GS P DLA+SNLAKSGQISRNALCPCGSKKRYKRCCGKD
Sbjct: 181 KPMPKNINEVQKLMGSTPFDLAKSNLAKSGQISRNALCPCGSKKRYKRCCGKD 229

[Close]

BLAST of Lsi06G001960 vs. NCBI nr
Match: gi|720085603|ref|XP_010243567.1| (PREDICTED: uncharacterized protein LOC104587595 [Nelumbo nucifera])

HSP 1 Score: 318.2 bits (814), Expect = 1.2e-83
Identity = 159/207 (76.81%), Postives = 182/207 (87.92%), Query Frame = 1


Query: 27  SSDHSPRNCYLTPLQSRSIFSTTQLHGSWMDKIKGVIGGKKSASEGTEISSESFTLLRFA 86
           SS     +C  +  Q+RSIFST+QL GSWMDKIKGV  G+K+  E ++++SESFTLLRFA
Sbjct: 18  SSSRPQLHCRFSLSQTRSIFSTSQLDGSWMDKIKGVFTGQKTTPE-SQVTSESFTLLRFA 77

Query: 87  DELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGGFDSTGENIQTSQKQEAAKN 146
           DELK AR+ G+FK +IVGRSSEATFAD+FEKQEAIIRYLGGFD TGEN+Q+SQKQEAAK+
Sbjct: 78  DELKTARKAGSFKNFIVGRSSEATFADSFEKQEAIIRYLGGFDPTGENLQSSQKQEAAKH 137

Query: 147 CNCTIADVENVLAKFMWAKEAQKKIEKLKEEGKPLPTSIAEVQKLVGSNPLDLARSNLAK 206
           CNCTIA+VE+ LAKF WAKEAQKKIEKLK EGKP+P S+AEVQKL+GS PLDLARSNLAK
Sbjct: 138 CNCTIAEVESALAKFTWAKEAQKKIEKLKAEGKPMPKSLAEVQKLMGSTPLDLARSNLAK 197

Query: 207 SGQISRNALCPCGSKKRYKRCCGKDQT 234
           SGQISRNALCPCGSKKRYKRCCGKD +
Sbjct: 198 SGQISRNALCPCGSKKRYKRCCGKDSS 223

The following BLAST results are available for this feature:

BLAST of Lsi06G001960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G001960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWL6_CUCSA	1.1e-118	92.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573720 PE=4 SV=1	[more]
M5VZX4_PRUPE	3.3e-83	70.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010950mg PE=4 SV=1	[more]
A0A061F3F5_THECC	7.3e-83	70.74	Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026433 PE=4 SV=1	[more]
V4V388_9ROSI	1.4e-81	78.28	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002483mg PE=4 SV=1	[more]
A0A059D2G7_EUCGR	1.2e-80	76.68	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01740 PE=4 SV=1	[more]

BLAST of Lsi06G001960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04950.1	1.3e-75	72.92	SEC-C motif (InterPro:IPR004027)	[more]

BLAST of Lsi06G001960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435752\|ref\|XP_004135658.1\|	1.5e-118	92.31	PREDICTED: uncharacterized protein LOC101217561 [Cucumis sativus]	[more]
gi\|659099735\|ref\|XP_008450751.1\|	3.4e-118	92.74	PREDICTED: uncharacterized protein LOC103492237 [Cucumis melo]	[more]
gi\|1009117737\|ref\|XP_015875477.1\|	4.5e-86	80.48	PREDICTED: protein translocase subunit SecA isoform X1 [Ziziphus jujuba]	[more]
gi\|645222458\|ref\|XP_008218173.1\|	6.5e-85	71.67	PREDICTED: uncharacterized protein LOC103318555 [Prunus mume]	[more]
gi\|720085603\|ref\|XP_010243567.1\|	1.2e-83	76.81	PREDICTED: uncharacterized protein LOC104587595 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004027	SEC_C_motif

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G001960.1	Lsi06G001960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004027	SEC-C motif	PFAM	PF02810	SEC-C	coord: 212..230 score: 9.
None	No IPR available	PANTHER	PTHR36750	FAMILY NOT NAMED	coord: 4..234 score: 4.8E
None	No IPR available	unknown	SSF103642	Sec-C motif	coord: 210..230 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G001960	Csa1G573720	Cucumber (Chinese Long) v2	culsiB058
Lsi06G001960	CSPI01G27310	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G001960	Cucsa.289060	Cucumber (Gy14) v1	cgylsiB471
Lsi06G001960	CmaCh11G009910	Cucurbita maxima (Rimu)	cmalsiB139
Lsi06G001960	CmoCh11G010090	Cucurbita moschata (Rifu)	cmolsiB125
Lsi06G001960	Cla011287	Watermelon (97103) v1	lsiwmB396
Lsi06G001960	MELO3C015384	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G001960	ClCG03G016340	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G001960	MELO3C015384.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G001960	Cla97C03G066650	Watermelon (97103) v2	lsiwmbB365
Lsi06G001960	Bhi02G001660	Wax gourd	lsiwgoB517
Lsi06G001960	Cp4.1LG04g01850	Cucurbita pepo (Zucchini)	cpelsiB561
Lsi06G001960	CsGy1G026520	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G001960	Carg16489	Silver-seed gourd	carlsiB831
Lsi06G001960	CsaV3_1G039620	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G001960	Cucurbita moschata (Rifu)	cmolsiB057