WMU08076 (transcribed_cluster) Watermelon (97103) v1

NameWMU08076
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionProtein translocase subunit SecA
LocationChr3 : 27199064 .. 27199784 (-)
Sequence length291
The following sequences are available for this feature:

transcribed_cluster sequence

CTAGGTCAAATTTGGCCAAGAGTGGCCAGATAAGCCGGAATGCTCTCTGTCCTTGCGGTTCAAAGAAGAGATATAAACGGTGCTGCGGGAAGGATCAAACTGTATAAGAAGAGAACTTGCATGTGCCTTTCTTTTGCATGAATAATTGACAATGTATAAGAATTCTTTTGGATTGGTCATTCTATTTTATCTCATCTGGTTTCTGGATTATGATATGTTGAGATTCTTCTTTCAGCGGCTGGATGATCTTTTAATGCATTTTTAATCCTTTATTGAAAAGGGATCTTAACC
BLAST of WMU08076 vs. TAIR10
Match: AT3G04950.1 (AT3G04950.1 SEC-C motif (InterPro:IPR004027))

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-13
Identity = 31/31 (100.00%), Postives = 29/31 (93.55%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKD 62
           RSNLAKSGQISRNALCPCGSKKRYKRCCGKD
Sbjct: 201 RSNLAKSGQISRNALCPCGSKKRYKRCCGKD 231

Query: 63  96
           
Sbjct: 261 231

BLAST of WMU08076 vs. TrEMBL
Match: A0A0A0LWL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573720 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 62
           RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 201 RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

Query: 63  105
           
Sbjct: 261 234

BLAST of WMU08076 vs. TrEMBL
Match: B9REU8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1428920 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-10
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 62
           RSNLAKSGQ+SRNALCPCGSKKRYKRCCGKD+ V
Sbjct: 191 RSNLAKSGQLSRNALCPCGSKKRYKRCCGKDEKV 224

Query: 63  105
           
Sbjct: 251 224

BLAST of WMU08076 vs. TrEMBL
Match: A0A0D2VC29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G122400 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQ 62
           RSN+AKSGQISRNALCPCGSKKRYKRCCGKDQ
Sbjct: 197 RSNMAKSGQISRNALCPCGSKKRYKRCCGKDQ 228

Query: 63  99
           
Sbjct: 257 228

BLAST of WMU08076 vs. TrEMBL
Match: A0A061F2D2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_026433 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQ 62
           RSN+AKSGQISRNALCPCGSKKRYKRCCGKDQ
Sbjct: 206 RSNMAKSGQISRNALCPCGSKKRYKRCCGKDQ 237

Query: 63  99
           
Sbjct: 266 237

BLAST of WMU08076 vs. TrEMBL
Match: A0A061F3F5_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026433 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQ 62
           RSN+AKSGQISRNALCPCGSKKRYKRCCGKDQ
Sbjct: 195 RSNMAKSGQISRNALCPCGSKKRYKRCCGKDQ 226

Query: 63  99
           
Sbjct: 255 226

BLAST of WMU08076 vs. NCBI nr
Match: gi|449435752|ref|XP_004135658.1| (PREDICTED: uncharacterized protein LOC101217561 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 62
           RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 201 RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

Query: 63  105
           
Sbjct: 261 234

BLAST of WMU08076 vs. NCBI nr
Match: gi|659099735|ref|XP_008450751.1| (PREDICTED: uncharacterized protein LOC103492237 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 62
           RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV
Sbjct: 201 RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 234

Query: 63  105
           
Sbjct: 261 234

BLAST of WMU08076 vs. NCBI nr
Match: gi|255542408|ref|XP_002512267.1| (PREDICTED: protein translocase subunit SecA [Ricinus communis])

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-10
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTV 62
           RSNLAKSGQ+SRNALCPCGSKKRYKRCCGKD+ V
Sbjct: 191 RSNLAKSGQLSRNALCPCGSKKRYKRCCGKDEKV 224

Query: 63  105
           
Sbjct: 251 224

BLAST of WMU08076 vs. NCBI nr
Match: gi|823264990|ref|XP_012465235.1| (PREDICTED: uncharacterized protein LOC105784027 [Gossypium raimondii])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQ 62
           RSN+AKSGQISRNALCPCGSKKRYKRCCGKDQ
Sbjct: 197 RSNMAKSGQISRNALCPCGSKKRYKRCCGKDQ 228

Query: 63  99
           
Sbjct: 257 228

BLAST of WMU08076 vs. NCBI nr
Match: gi|728812504|gb|KHG00858.1| (Protein translocase subunit SecA [Gossypium arboreum])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3

Query: 3   RSNLAKSGQISRNALCPCGSKKRYKRCCGKDQ 62
           RSN+AKSGQISRNALCPCGSKKRYKRCCGKDQ
Sbjct: 197 RSNMAKSGQISRNALCPCGSKKRYKRCCGKDQ 228

Query: 63  99
           
Sbjct: 257 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G04950.15.0e-13100.00 SEC-C motif (InterPro:IPR004027)[more]
Match NameE-valueIdentityDescription
A0A0A0LWL6_CUCSA2.3e-11100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573720 PE=4 SV=1[more]
B9REU8_RICCO4.4e-1091.18Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1428920 PE=4 SV=1[more]
A0A0D2VC29_GOSRA4.4e-1096.88Uncharacterized protein OS=Gossypium raimondii GN=B456_013G122400 PE=4 SV=1[more]
A0A061F2D2_THECC4.4e-1096.88Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_026433 PE=4 SV=1[more]
A0A061F3F5_THECC4.4e-1096.88Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026433 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449435752|ref|XP_004135658.1|3.4e-11100.00PREDICTED: uncharacterized protein LOC101217561 [Cucumis sativus][more]
gi|659099735|ref|XP_008450751.1|3.4e-11100.00PREDICTED: uncharacterized protein LOC103492237 [Cucumis melo][more]
gi|255542408|ref|XP_002512267.1|6.3e-1091.18PREDICTED: protein translocase subunit SecA [Ricinus communis][more]
gi|823264990|ref|XP_012465235.1|1.1e-0996.88PREDICTED: uncharacterized protein LOC105784027 [Gossypium raimondii][more]
gi|728812504|gb|KHG00858.1|1.1e-0996.88Protein translocase subunit SecA [Gossypium arboreum][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla011287Cla011287gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0073772S1_0073772EST
S3_0068303S3_0068303EST