Cla010988 (gene) Watermelon (97103) v1

NameCla010988
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSusceptibility homeodomain transcription factor (Fragment) (AHRD V1 *-*- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538
LocationChr1 : 18083278 .. 18083769 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTTGTGACAGAGGAAATCAAAGGCAAAGCAGATGAAGTATACCATGGAGATGAGATGTGCCAAGAGAAATCCAAAGAATTACTGAAAGAAATAGGGCTTCCAAATGGGCTTTTGCCATTGAAAGACATAGAAGAATGTGGGATTGTAAGAGAAACAGGGTTTGTTTGGTTGAAGCAGAAAAAAAGCACAACTCACAAGTTTGAGAAGATTGGGAAGCTTGTTTCTTATGCCACTGAAGTAACAGCCATTGTAGAGCAAAACAAAATCAAGAAACTCACTGGTGTTAAGACCAAGGAGCTTCTGCTTTGGGTTACACTGAGTGATATCTATGTTGATGATCCACCCACTGGAAAAATCACCTTTCAAACACCAGCAGGGCTATTTAGGACTTTTCCAGTCTCAGCTTTTCAGGTTGAAGAGCCAGTAAAGGCAGTGAGTGAGAAGAAGGAACAAGAGGTGGGAACTGTTGAAGTCAAGGAGGTCTAG

mRNA sequence

ATGTCTGTTGTGACAGAGGAAATCAAAGGCAAAGCAGATGAAGTATACCATGGAGATGAGATGTGCCAAGAGAAATCCAAAGAATTACTGAAAGAAATAGGGCTTCCAAATGGGCTTTTGCCATTGAAAGACATAGAAGAATGTGGGATTGTAAGAGAAACAGGGTTTGTTTGGTTGAAGCAGAAAAAAAGCACAACTCACAAGTTTGAGAAGATTGGGAAGCTTGTTTCTTATGCCACTGAAGTAACAGCCATTGTAGAGCAAAACAAAATCAAGAAACTCACTGGTGTTAAGACCAAGGAGCTTCTGCTTTGGGTTACACTGAGTGATATCTATGTTGATGATCCACCCACTGGAAAAATCACCTTTCAAACACCAGCAGGGCTATTTAGGACTTTTCCAGTCTCAGCTTTTCAGGTTGAAGAGCCAGTAAAGGCAGTGAGTGAGAAGAAGGAACAAGAGGTGGGAACTGTTGAAGTCAAGGAGGTCTAG

Coding sequence (CDS)

ATGTCTGTTGTGACAGAGGAAATCAAAGGCAAAGCAGATGAAGTATACCATGGAGATGAGATGTGCCAAGAGAAATCCAAAGAATTACTGAAAGAAATAGGGCTTCCAAATGGGCTTTTGCCATTGAAAGACATAGAAGAATGTGGGATTGTAAGAGAAACAGGGTTTGTTTGGTTGAAGCAGAAAAAAAGCACAACTCACAAGTTTGAGAAGATTGGGAAGCTTGTTTCTTATGCCACTGAAGTAACAGCCATTGTAGAGCAAAACAAAATCAAGAAACTCACTGGTGTTAAGACCAAGGAGCTTCTGCTTTGGGTTACACTGAGTGATATCTATGTTGATGATCCACCCACTGGAAAAATCACCTTTCAAACACCAGCAGGGCTATTTAGGACTTTTCCAGTCTCAGCTTTTCAGGTTGAAGAGCCAGTAAAGGCAGTGAGTGAGAAGAAGGAACAAGAGGTGGGAACTGTTGAAGTCAAGGAGGTCTAG

Protein sequence

MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLKQKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGKITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKEQEVGTVEVKEV
BLAST of Cla010988 vs. TrEMBL
Match: A0A0A0LTC9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181260 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.8e-80
Identity = 151/163 (92.64%), Postives = 159/163 (97.55%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MSVVTEEIKGK +EVYHGDE+CQEKSKELLKEIGLPNGLLPLKDIEECGI+RETGFVWLK
Sbjct: 34  MSVVTEEIKGKTEEVYHGDEICQEKSKELLKEIGLPNGLLPLKDIEECGIIRETGFVWLK 93

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKSTTHKFEKIGKLVSYATEVTA VE+NKIKKLTGVKTKELL+WV+LSDIYVDDPPTGK
Sbjct: 94  QKKSTTHKFEKIGKLVSYATEVTATVEKNKIKKLTGVKTKELLIWVSLSDIYVDDPPTGK 153

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKEQEVGTVEVKEV 164
           ITFQTPAGL+RTFPVSAFQVEEPVKAVSEKKEQ V TVEVKE+
Sbjct: 154 ITFQTPAGLYRTFPVSAFQVEEPVKAVSEKKEQVVETVEVKEI 196

BLAST of Cla010988 vs. TrEMBL
Match: A0A0D2R658_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G235700 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-66
Identity = 125/155 (80.65%), Postives = 145/155 (93.55%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MS+VTEEIKG A E+YHGDE+CQEKSK LL+E+G+P+GLLPLKDIEECG V++TGFVWLK
Sbjct: 1   MSLVTEEIKGSASEIYHGDEICQEKSKFLLEEMGMPSGLLPLKDIEECGYVKDTGFVWLK 60

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKS THKF+KIGKLVSYATEVTA+VE+NKIKKLTGVKTKELL+W+TLSDIYVDDPPTG 
Sbjct: 61  QKKSITHKFDKIGKLVSYATEVTAVVEKNKIKKLTGVKTKELLVWITLSDIYVDDPPTGN 120

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVK-AVSEKKEQE 155
           ITF+TPAGLFRTFPVSAF+VE  +K AV +KKE++
Sbjct: 121 ITFKTPAGLFRTFPVSAFEVEGELKGAVKDKKEEK 155

BLAST of Cla010988 vs. TrEMBL
Match: W9R2R6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018900 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-66
Identity = 132/172 (76.74%), Postives = 147/172 (85.47%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MS+VTEEIK KA EVYHGDE+C+EKS+ELL E+GLPNGLLPL DI ECGIVRETGFVWLK
Sbjct: 1   MSLVTEEIKAKA-EVYHGDEICKEKSQELLTEVGLPNGLLPLTDILECGIVRETGFVWLK 60

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKS THKF KIGKLVSYATEVTA+ E+NKIKKLTGVKTKELLLW+TLSDI+VDDPPTGK
Sbjct: 61  QKKSITHKFNKIGKLVSYATEVTAVAEKNKIKKLTGVKTKELLLWITLSDIFVDDPPTGK 120

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKE---------QEVGTVEVKEV 164
           ITF+TP GLFR+FPVSAF+VEEP  A +  K+         +E G VEVKEV
Sbjct: 121 ITFKTPTGLFRSFPVSAFEVEEPKAAAAASKDVKENKDATKEENGAVEVKEV 171

BLAST of Cla010988 vs. TrEMBL
Match: A0A067JKM9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23201 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-66
Identity = 129/163 (79.14%), Postives = 145/163 (88.96%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MS+VTEEIK KA EVYHGDE+CQ+K+K LL E+GLPNGLLPL DI ECGIVRETGFVWLK
Sbjct: 1   MSLVTEEIKAKA-EVYHGDEICQDKTKLLLAEVGLPNGLLPLHDILECGIVRETGFVWLK 60

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKS THKFEKIG+L +YA EVTA+VE+ KIKKLTGVKTKELLLWVTLSDIY+DDPPTGK
Sbjct: 61  QKKSITHKFEKIGRLTTYAPEVTAVVEKGKIKKLTGVKTKELLLWVTLSDIYLDDPPTGK 120

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKEQEVGTVEVKEV 164
           ITFQTPAGL+RTFPVSAF+VEEP K V E+ ++    VEVK+V
Sbjct: 121 ITFQTPAGLYRTFPVSAFEVEEPKKDVKEEVKEVKAAVEVKDV 162

BLAST of Cla010988 vs. TrEMBL
Match: A0A0B2Q409_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012021 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-66
Identity = 127/162 (78.40%), Postives = 144/162 (88.89%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MS+VT EIK KA EVYHGDE+CQEKSK LLKE+GLPNGLLPLKDIEECG  R++GFVWLK
Sbjct: 1   MSLVTAEIKAKA-EVYHGDELCQEKSKLLLKEVGLPNGLLPLKDIEECGYERDSGFVWLK 60

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKST HKFEKIGKLVSYA E+TA VE  KIKKLTGVKTKELL+W+TLS+I+VDDPPTGK
Sbjct: 61  QKKSTNHKFEKIGKLVSYAPEITAYVEVGKIKKLTGVKTKELLVWITLSEIFVDDPPTGK 120

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKEQEVGTVEVKE 163
           ITF+TP+GLFRTFPVSAF++EEPVK V EK+E+     +VKE
Sbjct: 121 ITFKTPSGLFRTFPVSAFEIEEPVKEVKEKEEEHKEVKQVKE 161

BLAST of Cla010988 vs. NCBI nr
Match: gi|659128666|ref|XP_008464314.1| (PREDICTED: uncharacterized protein LOC103502227 [Cucumis melo])

HSP 1 Score: 310.1 bits (793), Expect = 2.3e-81
Identity = 153/163 (93.87%), Postives = 159/163 (97.55%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MSVVTEEIKGK +EVYHGDE+CQEKSKELLKEIGLPNGLLPLKDIEECGI+RETGFVWLK
Sbjct: 1   MSVVTEEIKGKTEEVYHGDEICQEKSKELLKEIGLPNGLLPLKDIEECGIIRETGFVWLK 60

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKSTTHKFEKIGKLVSYATEVTA VE+NKIKKLTGVKTKELLLWV+LSDIYVDDPPTGK
Sbjct: 61  QKKSTTHKFEKIGKLVSYATEVTATVEKNKIKKLTGVKTKELLLWVSLSDIYVDDPPTGK 120

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKEQEVGTVEVKEV 164
           ITFQTPAGLFRTFPVSAFQVEEPVKA SEKKEQ VGTVEVKE+
Sbjct: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAASEKKEQVVGTVEVKEI 163

BLAST of Cla010988 vs. NCBI nr
Match: gi|700209917|gb|KGN65013.1| (hypothetical protein Csa_1G181260 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.6e-80
Identity = 151/163 (92.64%), Postives = 159/163 (97.55%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MSVVTEEIKGK +EVYHGDE+CQEKSKELLKEIGLPNGLLPLKDIEECGI+RETGFVWLK
Sbjct: 34  MSVVTEEIKGKTEEVYHGDEICQEKSKELLKEIGLPNGLLPLKDIEECGIIRETGFVWLK 93

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKSTTHKFEKIGKLVSYATEVTA VE+NKIKKLTGVKTKELL+WV+LSDIYVDDPPTGK
Sbjct: 94  QKKSTTHKFEKIGKLVSYATEVTATVEKNKIKKLTGVKTKELLIWVSLSDIYVDDPPTGK 153

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKEQEVGTVEVKEV 164
           ITFQTPAGL+RTFPVSAFQVEEPVKAVSEKKEQ V TVEVKE+
Sbjct: 154 ITFQTPAGLYRTFPVSAFQVEEPVKAVSEKKEQVVETVEVKEI 196

BLAST of Cla010988 vs. NCBI nr
Match: gi|778659689|ref|XP_004139521.2| (PREDICTED: uncharacterized protein LOC101214389 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.6e-80
Identity = 151/163 (92.64%), Postives = 159/163 (97.55%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MSVVTEEIKGK +EVYHGDE+CQEKSKELLKEIGLPNGLLPLKDIEECGI+RETGFVWLK
Sbjct: 1   MSVVTEEIKGKTEEVYHGDEICQEKSKELLKEIGLPNGLLPLKDIEECGIIRETGFVWLK 60

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKSTTHKFEKIGKLVSYATEVTA VE+NKIKKLTGVKTKELL+WV+LSDIYVDDPPTGK
Sbjct: 61  QKKSTTHKFEKIGKLVSYATEVTATVEKNKIKKLTGVKTKELLIWVSLSDIYVDDPPTGK 120

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKEQEVGTVEVKEV 164
           ITFQTPAGL+RTFPVSAFQVEEPVKAVSEKKEQ V TVEVKE+
Sbjct: 121 ITFQTPAGLYRTFPVSAFQVEEPVKAVSEKKEQVVETVEVKEI 163

BLAST of Cla010988 vs. NCBI nr
Match: gi|1009116603|ref|XP_015874863.1| (PREDICTED: uncharacterized protein LOC107411730 [Ziziphus jujuba])

HSP 1 Score: 268.1 bits (684), Expect = 1.0e-68
Identity = 133/165 (80.61%), Postives = 149/165 (90.30%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MS+VTEE K KADE+YHGD++CQEKSK LLKEIGLPNGLLPLKD+EECG V+ETGFVW+K
Sbjct: 1   MSLVTEENKAKADELYHGDDLCQEKSKLLLKEIGLPNGLLPLKDMEECGYVKETGFVWMK 60

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKS THKF+KIGKLVSYA EVTA VEQNKIKKLTGVKTKELL+W+TLSDIYVDDPPTGK
Sbjct: 61  QKKSHTHKFDKIGKLVSYAPEVTAYVEQNKIKKLTGVKTKELLVWITLSDIYVDDPPTGK 120

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKEQE--VGTVEVKEV 164
           ITF+TP+GL R+FPVSAF+VEEPVK V E +E +   G VEVKEV
Sbjct: 121 ITFKTPSGLSRSFPVSAFEVEEPVKDVKENQEVKGVSGAVEVKEV 165

BLAST of Cla010988 vs. NCBI nr
Match: gi|703086280|ref|XP_010092963.1| (hypothetical protein L484_018900 [Morus notabilis])

HSP 1 Score: 260.0 bits (663), Expect = 2.8e-66
Identity = 132/172 (76.74%), Postives = 147/172 (85.47%), Query Frame = 1

Query: 1   MSVVTEEIKGKADEVYHGDEMCQEKSKELLKEIGLPNGLLPLKDIEECGIVRETGFVWLK 60
           MS+VTEEIK KA EVYHGDE+C+EKS+ELL E+GLPNGLLPL DI ECGIVRETGFVWLK
Sbjct: 1   MSLVTEEIKAKA-EVYHGDEICKEKSQELLTEVGLPNGLLPLTDILECGIVRETGFVWLK 60

Query: 61  QKKSTTHKFEKIGKLVSYATEVTAIVEQNKIKKLTGVKTKELLLWVTLSDIYVDDPPTGK 120
           QKKS THKF KIGKLVSYATEVTA+ E+NKIKKLTGVKTKELLLW+TLSDI+VDDPPTGK
Sbjct: 61  QKKSITHKFNKIGKLVSYATEVTAVAEKNKIKKLTGVKTKELLLWITLSDIFVDDPPTGK 120

Query: 121 ITFQTPAGLFRTFPVSAFQVEEPVKAVSEKKE---------QEVGTVEVKEV 164
           ITF+TP GLFR+FPVSAF+VEEP  A +  K+         +E G VEVKEV
Sbjct: 121 ITFKTPTGLFRSFPVSAFEVEEPKAAAAASKDVKENKDATKEENGAVEVKEV 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LTC9_CUCSA1.8e-8092.64Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181260 PE=4 SV=1[more]
A0A0D2R658_GOSRA1.9e-6680.65Uncharacterized protein OS=Gossypium raimondii GN=B456_004G235700 PE=4 SV=1[more]
W9R2R6_9ROSA1.9e-6676.74Uncharacterized protein OS=Morus notabilis GN=L484_018900 PE=4 SV=1[more]
A0A067JKM9_JATCU2.5e-6679.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23201 PE=4 SV=1[more]
A0A0B2Q409_GLYSO2.5e-6678.40Uncharacterized protein OS=Glycine soja GN=glysoja_012021 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659128666|ref|XP_008464314.1|2.3e-8193.87PREDICTED: uncharacterized protein LOC103502227 [Cucumis melo][more]
gi|700209917|gb|KGN65013.1|2.6e-8092.64hypothetical protein Csa_1G181260 [Cucumis sativus][more]
gi|778659689|ref|XP_004139521.2|2.6e-8092.64PREDICTED: uncharacterized protein LOC101214389 [Cucumis sativus][more]
gi|1009116603|ref|XP_015874863.1|1.0e-6880.61PREDICTED: uncharacterized protein LOC107411730 [Ziziphus jujuba][more]
gi|703086280|ref|XP_010092963.1|2.8e-6676.74hypothetical protein L484_018900 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007493DUF538
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU21510watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU76587watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010988Cla010988.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU21510WMU21510transcribed_cluster
WMU76587WMU76587transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007493Protein of unknown function DUF538GENE3DG3DSA:2.30.240.10coord: 12..142
score: 6.7
IPR007493Protein of unknown function DUF538PFAMPF04398DUF538coord: 27..139
score: 7.1
IPR007493Protein of unknown function DUF538unknownSSF141562At5g01610-likecoord: 14..143
score: 3.92
NoneNo IPR availablePANTHERPTHR31676FAMILY NOT NAMEDcoord: 1..142
score: 6.5
NoneNo IPR availablePANTHERPTHR31676:SF10SUBFAMILY NOT NAMEDcoord: 1..142
score: 6.5