WMU76587 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU76587
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein of unknown function, DUF538
Location	Chr1 : 18083615 .. 18083828 (-)
Sequence length	217

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Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TATTCATATCAAAAGGTTGATTCAGAAACAAGAAGCAAAAAGCAAAAAAGAAAGAGAAAAATGTCTGTTGTGACAGAGGAAATCAAAAGGCAAAGCAGATGAAGTACACCATGGAGATGAGATGTGCCAAGAGAAATCCAAAAGAATTACTGAAAGAAATAGGGCTTCCAAATGGGCTTTTGCCATTGAAAGACATAGAAGAATGTGGGATTGTAAG

Library


Library category	ESTs
watermelon fruit 34d library	1

Homology

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BLAST of WMU76587 vs. TAIR10
Match: AT1G56580.1 (AT1G56580.1 Protein of unknown function, DUF538)

HSP 1 Score: 47.8 bits (112), Expect = 3.3e-06
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 3


Query: 87  KAKQMKYTMEMRCAKRNPKELLKEIGLPNGLLPLKDIEECG 146
           +A+  KYT +  C ++  KE LKE+ +PNGLLPLKDIEE G
Sbjct: 9   RARAEKYTGDEICREKT-KEFLKEVSMPNGLLPLKDIEEVG 48

Query: 147  206
           
Sbjct: 69   48

Query: 207  210
           
Sbjct: 129  48

The following BLAST results are available for this feature:

BLAST of WMU76587 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56580.1	3.3e-06	56.10	Protein of unknown function, DUF538	[more]

BLAST of WMU76587 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR007493	DUF538

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla010988	Cla010988	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S4_0101659	S4_0101659	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007493	Protein of unknown function DUF538	GENE3D	G3DSA:2.30.240.10		coord: 7..34 score: 2.
IPR007493	Protein of unknown function DUF538	unknown	SSF141562	At5g01610-like	coord: 9..35 score: 2.8