Cla010950 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010950
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 31458054 .. 31464916 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCATGGACGGGGGGGTGCAGAATCAGCCTCAGCAGCAACAGCCTCTCCCGGCGCAGCAGGTGGTTGTCGCGGAAAGACTTAACCAGGCAGTACAGCAACAGTTGAACCTAGAGGCTCTGAAGAATCGAGCTACTACTCTATTTAAAGCCATCTCTCGTATCCTCGAAGATTTTGATGTCTACGGTCGCACCAATACCACACCTAAATGGTCTACTTTCATCTTTCGCATTGTTTCCTTTTGTGATATTTTCCAAATTTGCTTGAATTTAAAATTCCTGATCGCCTTTCGATTGATAGAAAAACTAACTTTGTGTTGTTAGAACGCTTAGAATCGTTATCTTTTTTCTTGAGGTTTTGTACGGATGACCTCTTCAAGAGGGCCTTTATGACTAATGACACGTTCCTTATAAACGTAAGAAATCTTACTTCAGATCCCACCACCGCATTTTTACAACATTTTACAACATATAGCTTTAGTGATGACCATATTTAGATGACCATATTTATCATAACCCTAACGTGATCGCGATCAACTTACATTTTCATCACGGATTTCCCATAAATATAAGTGAGATGTTCATGACCGCAGTCTTTATAACGTATCGCGTTAGGGATGGTCATGTGTCGTTCTAACGCGATTATCGCAATATCATTTTTAACGATTTCCCCCTTGAATATAGGGTGAGGAAAACTCAATCACAATCTCGTTATGGCCACAATAAATATGTTATCCCTAATGTGATAAGTTATAAAAAAGCAATAGTGCGGTCACGTCAAAGGTTATATTTCATACATTTGTGTGGGGTGGGTTATCAATCATAAAAGCTCTTGTGAGAGGGTCACCCATACAAAAAACTCTTTTTTCTTTTTGCTGGGTAATAACAGACAATATAATAGGGGGAGGAGGAGGGCTCGAGAGTGTAGCATTTTTTATTTTGCTTTGTCTACACTTCCTATAATAGCCTGTTAGGTGTTAGAAAGTAATTTTCCCCCTATCTTGTGGACTTACATGTACGGATTATTTTTCTAAACATCAAAGCGTCTTAATATCTATCTATCAATCTATCTCTATATATTTCACAATTTTCCTCATCTGGCTGACTGTATAGTTGATTTTTACACCAGGCAAGACATACTGGGGCAATATTCTATGGTGAATCTCGAGCTTTTCAATATTGTTGATGAAATTAAGAAAGTTTCAAAGGCTTTTGTTGTACATCCAAAGAATGTTAATGCAGAGAATTCTACAAGTATGCCCCTGCATCCTTTCCAAGTATTTGATTAAGTAAAAGGAAAAATGATAAGTTTCTGTTCCGCTTGAAATTACTTCATAAAGACATTGGGATAATGTTTGGTTGTTTATTATGAACTCCTTCCTTGAGGGAAGGCAATTAGTTTTTAATTCTTTTTTTTTTTTGTGAGTTGGGAGGTAGTTGTTAAGTCTATCAGCAGAGAGGGTATTTGGAGCTTGGAAACTTGAGACTTCGTAATAAAGCCCTGTTGGCCAAGTGGTTGTGGCACTTTCCTCATGAGCTTGAAGCTTTATGGAGTAGGATTATCGGTAGTGAGTATGGCCCACATCCCTTTGAATGGTTTTTGAGCGGGGTTAAAGGCACACATCGGAATCTATGGAATTGGTATTTCCTTGGAGCATCTTTCTTTCTCTCCTCTCGTCTATTGCGTGGTGGGTGATGGAAAGGAATCGTATTTCTGAGAAGACCAGTGGGTGGGGGATAGATCCCCATGTTGTAGATTTCCTTAGTTATACTGTTTATATTCTCTTAAAATTCATTTTGTGTCTATTTTTTTCAGTGTGGTCGACAAGCTTTGTTTTGTTTTCTTTTGGGATTTGACGAGCGTTGTCTGTTAGGGAAACTGTTGAGATTGTCCTTGATTGGAGAGGTCTCCTTTAGTAGTAGAAGGAGGGATGTTCGTTTATGGAGTCTTGACCCTTTGGAGGGTTTCTCTTATAAATCCTTATTTTGTTTATTATTAGACCTATCTCCCCTTAGCGAGTCTGTCTTTGATTTCTTGTGGAGGATTAGGATACCAAAGAAAGTCATGTTCTTTGTTTGGCAAGTCTGCTTGGCCACGTGAAAATCTTAGTTTGGTTGTCGAGGATGTTGTCTTCGTTAGTGGGTCCTTTTTGTTGTATTCTTTGACGGAAGGCGGAGGAAGACTTGAATCACCTTCTCTTGAGCTGTGAGTTTTCTAGATAAGGTTGGAACTACTTATTTTAGGAGTTTGATTTTGTCTATGCTCGTCAGAGTAGTATTAGATACTTGATCGGGGAGTTCCTTCTCAATCCACTTTTGTTTGGGTAGGGTCACTTGTGGCTCGCTTGAGTGTGCTCTCTTTTATGGGATATTTGGGGGTGAGAGAAATAACGAAGTGTTTAGGAGGGTTAAAAAGGAATTGAGTGATCTCTAGTCTTTGTTGAAGTTTCATATTTCTTCATTTAATTTGCTGGAAAATGGTTTCTCAAGCTCAAAATTCTGGAGATCTTGGTCTTGGAGCTTTGAAACATAGAAATCTTGCCCTTATAGCTAAATGGGGGTGGCGTTTTATTCATGATCCAAATTCTTTATGGAGACAAGTGATAGTGAGTATTCATGGTTCTCAAGACTTCCAATGGCACTCACTTGGGAGAAATAATTTGAGTTTTAGAAGCCCTTGGATGAGCATCTCTAGAACATTGAAAAAAAAGTGGAACATTTGGCCATTTTTATCTCAAGAAATGGTCAACAAATCGACTCTTGGACAGACCCTTGGGCTAATAATTCTTCACTCAAGGTACTTTTTCCTCGTTTATTTGCATTATCTCGCAGTCAAGATGGTTTGGTGTCCTCCTTTTAGGACTTCTCTACCTCTTTCATAGAGTTTTCCATTTCGGTGTTCCTTCAAGGATGACGAGATAGTTAATTTCCAGAATTTAATGCAGTTACTTCCAAGTTTATTGTTTCTATTAATGATGATTCTAAAAAATGGTCCATTGAATCCTCTGGAAATTTCTCACTTAAATCATTGACAGGGTTTTTGGATTCTTCCTCTCCTATGGATAAGGCTTTAGTTGGTGCATTATGAAGGTCCGAAAGGTCAAAGCGTATTAATATTTTGATTTGGATTATGCTCAATGGTAATCTGAATATGGTTGGAATTTTACGGAGAAAATCTGCTTACAAGTGATTACTTCCTTCCATATGCTTCTTGTGTTACAAGGCAGGGGAATCTCTCAATCATCTACTTTTTGAGTGTGTTTATGCTTCTTCATGTTGGTTCAAGCCTTTTCATATCTTCTACATTCATTGGGTCTTCTCAAATATTTTTAAGGACAATGTTCTTCAAGTTCTTACTAGAATTTGGTTAGAACTCTACCTTCTCTCATTTTGATTGTTGGTTCAGCCTCTTATAAACCGTCATCTTGGTGTTGTTTATCATTCCACGGTTACTTAATTCAAGACATTTCGCATTGTTGGGCTCTTCTATCTTTTCTCATTTTTGAAATGTTTTATTTTGTTCTTGTTCTTAACAGGATTTTGGTGTTCCACCTTGTTCTATCTTCTCAATTTGTTCTTTTGGTTCTTTTGCCTTTTGTCCTATTCTTCTTTAGTCTCTTCTCTTTTTCATTTGCTTAATGGAAATCCCGAATCTTTTTCAAAAAAATGTTAGGTACTTAAGTACCTTGGAGAACTACACCCCAAAAGCTAGCTATTGAGGTGGAGAGCCAAGTAACTTAAGTACCATATTGGTCATCCCACTCTAACCAATGTGGGATAAAGATGGCCCATACTACCTTGGTTCCTAACAATCCCCATCCTCGGAAAGCCGACATCTTGGCGACTACTATGACGGTATTTCACTCGGCCACACCTGGTCAGAACCCTCCGTCAGTTCCATTCCGGAACATCAACAACCAACTTTGATACCATTGTTAGGTACTTAAGTACCTTGGAGAACCACACTCTAAAAACTAGCATTGAGGTGGGAGAGCCAAGCCACTTAAGTACCACATTGGTCATCCCATTCTAACCAATGTGGGACAAAGGTAACCCATACTACCTTGGTTCCTAATAAAAAAGTAGAGTTTTGTTCTTACTCTCAAGGCTTTGTAATCCTAGCCTTCCATTCTCCAACGGAGGAATAATAATATTTTCTCATTGAATAAGATGTATACCTGTTCTATCACAATGTCCTTTTCAAAGAAACTTTTAAGAAATGCTCTCCAAGGACTGAATCACCTTGAAAGGCATGACATGAGGAAAACGAGAGATTTAATAGTTTGGCTTATAGCAAGTCTCCCTCCTCATAAAATAGAAAAGTTTTTCCACCTGTTTCTGTAATGCTTGAAAAGGTTTTTGTTGTCTAAAATCAGCCTGCTAAGTATTGCACATGATCCCTCAACTAGTATTTTAAGAGAAAGGAAAATGGAACAATCATTCATTGATTTGTAAAATTTTGATTTCCACTAATTTTTCTTCCTTTTTGTGAGCCCAGTACTACCAGTTATGTTGTCCTCAAAACTATTGCCTGAGATGGAGGTAGAAGACAATTCAAAACGAGAGCAGTTGCTTCTTGGGATGCAAAACATGCCAGTGTCTACTCAGATTGAGAAATTAAAGGTACTAGAAGTTCGTTAAATAACTATAGGCCGTAGAACTCGTTGAGTTCTAAAGAAATTCACTAAATCACATACTTTCTTATGTATCTGGCATTTAGGTTTACTTTTCTTACAGACTAGAATTGAAATGATTGGAGCAGCCTGTGAAAGTGCTGAAAAAATATTAGCTGAAACTCGGAAAGCATATTGTTTCGGGATGCGTCAAGGGCCAGCGATAGCTCCAACTTTAGATAAGGCTCAAGCTGCAAAAATTCAGGAGCAAGAGAATCTACTCCGAGCTGCTGTTAACTTTGGCGAAGGTAATATTTTATTACTTTTATAGTTGTTGATTGATATCTTAGTTTAAATTAGTTGTAGTTCATATATTGTTTAGTACTGTATCATTGATAAAATAAAAAGAGACTAATGCTCAAATTACTACAAAACAATATATACAAAAATATCAAATACAACCAATAATAGCACTTGAAAAAAACATAGAAAGCCTTTGATAACAACTAAGCAGAGAGAACAATAAATAGACAACCAGCAAAGAGAAAAAGTGAACATTGTACAAAGCTCCAAATCAAAGATCTGAAAGCCAGAACAAAAGCTTAGAAAAAACTTGTCAAAGTTGAGCCGACAATGAAGAATGCTAATAAAACACATAAAATGTAGTGTATAAACGGGAGTGTTCTTGAAATTGTTAGAATCACTTTTGCCATGTTACTAATCACTTCTAAACACACCTTTATTCACTCAAAATTAATTTAATATTTAATTTTATACTTCTAAATGCAATTTTCATATTATCCAAATTGGTTTTGAATTATTAACAACATGTTTAGAGTGATTTTGAAAATGGAGTGATTTTAACTATTTCAAAATCATTCTCAAACATGCTTGTTAATAAACGATGGAAGCAATTTTTCCTCTCTACTTCAATCAATGCTCCAAGAACAAAAGACACAATGTCATCCAACAATAGATCTCAGAACTGGTGAGGTAGATGTACAACCTTAAGGGCTTGGGTTGTTCAAAACTTAACACTAGAACCAAGATGTATTTTGGCCACAATTTCCACAGAATTTCTAGCGACCAAACTTGATAAGTTTTTTTTTCTTTCTTTTTATAACTTCAAGTTCAAACATTCAGCTAAAACCTCTGCACCAACTCTTGAAGAAGCACAAACAAACCGAGCTAAAACAAAATGGTCCTTATTCTTAAAGACCAACTCCCATTAGCCAAATGTATGATTTACTCCTTTAAGACCTTCTCAAAATAACAAAATCAGGAATCCTTCAAAGGACTAAATCATCTTAGCTGGCAAAAAGGATGAAAAATAGGGGAGGAAACGGTTCGATTTTGCTATTTTTTAAAAAAATATGTATATATATATTTAATTAAAATGGTTTGGGATGAGGCAAATGTAAGTCTTGTTTAAACTAGCATTGATGATGCCATTCCTAAAGAAATCTTGGAAAACTCTCAAGATATCGGATTTAAGGATGTTTCAAGACTTTTTAAAGAATTCCGTTGTAAAACCGTCCGGTCCCGGTGTTTTGTTCGTCCCCAAATCATGGTCAGCTTGTAAGATTTCTGCCTCTGTGAACTCCTTTTCAAGGTCTTCAGCTTGTTGATTAGAAGGTAGCTTCCCAGTTGAGGTTAGTTGGAATGTACCTGTAACCCTCCATTTTAGTGTATAATTCCTTATAGAATCGAAGGAATTCCCCTTCAATTTCAGAATCTGTAATTAAGCTTTTACATTGTACTTGTTGCTCACTTTTCCTATGTATTTTCTGTTTTCTCCTTTCCTTATTTTTGTTTCCTTAGCATTAATCTCTTTTCATTTTTCTCGATGAAAAGTTTTGTATCCTTTAAAAAAAAAAATCATAAATTTTGTAATTATTTTTAGAAATTAATTAAGAAAATTTTGGATATCAAAGTTTTTCATATTCTCTTACATTTAATTATAATTAACAATGGAATTTCAGTAGTTTTAAATAAGTCTAAAAAGTAAAAGTGTAATTATAAGTCACCACTCAACCATTTATTAATAAAGAAACTCAAATAAGCTTTGTACTTAACTAAAAGGAATGAGTGAAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAAGCTCCTAACGAATTGGAATTCAGAAACCATTCTTTCATTCCCCCTAATCGTCCGAAATTGCTGGCACATTTGGCATCCTTCCTTGAAGATTGTGATCTTGTCTTTGGATAG

mRNA sequence

ATGGCAACCATGGACGGGGGGGTGCAGAATCAGCCTCAGCAGCAACAGCCTCTCCCGGCGCAGCAGGTGGTTGTCGCGGAAAGACTTAACCAGGCAGTACAGCAACAGTTGAACCTAGAGGCTCTGAAGAATCGAGCTACTACTCTATTTAAAGCCATCTCTCGTATCCTCGAAGATTTTGATGTCTACGGTCGCACCAATACCACACCTAAATGGCAAGACATACTGGGGCAATATTCTATGGTGAATCTCGAGCTTTTCAATATTGTTGATGAAATTAAGAAAGTTTCAAAGGCTTTTGTTGTACATCCAAAGAATGTTAATGCAGAGAATTCTACAATACTACCAGTTATGTTGTCCTCAAAACTATTGCCTGAGATGGAGGTAGAAGACAATTCAAAACGAGAGCAGTTGCTTCTTGGGATGCAAAACATGCCAGTGTCTACTCAGATTGAGAAATTAAAGACTAGAATTGAAATGATTGGAGCAGCCTGTGAAAGTGCTGAAAAAATATTAGCTGAAACTCGGAAAGCATATTGTTTCGGGATGCGTCAAGGGCCAGCGATAGCTCCAACTTTAGATAAGGCTCAAGCTGCAAAAATTCAGGAGCAAGAGAATCTACTCCGAGCTGCTGTTAACTTTGGCGAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAAGCTCCTAACGAATTGGAATTCAGAAACCATTCTTTCATTCCCCCTAATCGTCCGAAATTGCTGGCACATTTGGCATCCTTCCTTGAAGATTGTGATCTTGTCTTTGGATAG

Coding sequence (CDS)

ATGGCAACCATGGACGGGGGGGTGCAGAATCAGCCTCAGCAGCAACAGCCTCTCCCGGCGCAGCAGGTGGTTGTCGCGGAAAGACTTAACCAGGCAGTACAGCAACAGTTGAACCTAGAGGCTCTGAAGAATCGAGCTACTACTCTATTTAAAGCCATCTCTCGTATCCTCGAAGATTTTGATGTCTACGGTCGCACCAATACCACACCTAAATGGCAAGACATACTGGGGCAATATTCTATGGTGAATCTCGAGCTTTTCAATATTGTTGATGAAATTAAGAAAGTTTCAAAGGCTTTTGTTGTACATCCAAAGAATGTTAATGCAGAGAATTCTACAATACTACCAGTTATGTTGTCCTCAAAACTATTGCCTGAGATGGAGGTAGAAGACAATTCAAAACGAGAGCAGTTGCTTCTTGGGATGCAAAACATGCCAGTGTCTACTCAGATTGAGAAATTAAAGACTAGAATTGAAATGATTGGAGCAGCCTGTGAAAGTGCTGAAAAAATATTAGCTGAAACTCGGAAAGCATATTGTTTCGGGATGCGTCAAGGGCCAGCGATAGCTCCAACTTTAGATAAGGCTCAAGCTGCAAAAATTCAGGAGCAAGAGAATCTACTCCGAGCTGCTGTTAACTTTGGCGAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAAGCTCCTAACGAATTGGAATTCAGAAACCATTCTTTCATTCCCCCTAATCGTCCGAAATTGCTGGCACATTTGGCATCCTTCCTTGAAGATTGTGATCTTGTCTTTGGATAG

Protein sequence

MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLSSKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYCFGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGEVTGEDINALFSQNEAPNELEFRNHSFIPPNRPKLLAHLASFLEDCDLVFG

Homology

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BLAST of Cla010950 vs. Swiss-Prot
Match: MED8_ARATH (Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN=MED8 PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-77
Identity = 146/211 (69.19%), Postives = 176/211 (83.41%), Query Frame = 1


Query: 8   VQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDVYGRTN 67
           ++ QPQQ  P P     VAE+LN  ++++LNLE+LK RA +L KAI+RILEDFD YGRTN
Sbjct: 1   METQPQQPPPPP-----VAEKLNPKLEKELNLESLKTRAVSLAKAIARILEDFDAYGRTN 60

Query: 68  TTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLSSKLLPEM 127
           TTPKWQDILGQYSMVNLELFNIV+E+K+VS AFVV PKNVNA N+ ILPVMLSSKLLPEM
Sbjct: 61  TTPKWQDILGQYSMVNLELFNIVEEVKRVSNAFVVLPKNVNAMNAAILPVMLSSKLLPEM 120

Query: 128 EVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYCFGMRQGP 187
           E +DN+KREQLL G+Q++P+  QIE+LK R++MI AACE+AE++LA+TRKAY FG RQGP
Sbjct: 121 ETDDNAKREQLLQGVQSLPIPMQIERLKARMDMIAAACENAERVLADTRKAYGFGTRQGP 180

Query: 188 AIAPTLDKAQAAKIQEQENLLRAAVNFGEVT 219
           ++ PT+DK QAAKIQEQE +LR AVN G+ T
Sbjct: 181 SMLPTMDKGQAAKIQEQEKMLRDAVNDGKGT 206

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BLAST of Cla010950 vs. TrEMBL
Match: A0A0A0L8Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G640620 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 8.5e-112
Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 1   MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60
           MAT+DG VQNQPQQQQPLPAQQVV AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120
           DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS
Sbjct: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120

Query: 121 SKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180
           SKLLPEMEV+DNSKREQLLLGM NMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC
Sbjct: 121 SKLLPEMEVDDNSKREQLLLGMHNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180

Query: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
           FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE
Sbjct: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 216

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BLAST of Cla010950 vs. TrEMBL
Match: A0A061GA94_THECC (Mediator subunit 8 isoform 1 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92
Identity = 179/214 (83.64%), Postives = 192/214 (89.72%), Query Frame = 1


Query: 4   MDGGVQNQPQQQQPLPAQQVVV-AERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDV 63
           M+G +Q+  QQQQ     QVV  AERLNQAVQQQLNLE+LK RA +LFKAISRILEDFD 
Sbjct: 1   MEGMIQDPSQQQQAQQKNQVVAGAERLNQAVQQQLNLESLKTRAISLFKAISRILEDFDA 60

Query: 64  YGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLSSK 123
           Y RTNTTPKW DILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAEN++ILPVMLSSK
Sbjct: 61  YSRTNTTPKWLDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENASILPVMLSSK 120

Query: 124 LLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYCFG 183
           LLPEME EDN KREQLL GMQN+P+ +QIEKLKTRI+MIGAACESAEK+LA+TRKAYCFG
Sbjct: 121 LLPEMETEDNLKREQLLQGMQNLPIPSQIEKLKTRIDMIGAACESAEKVLADTRKAYCFG 180

Query: 184 MRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
            RQGPAI PTLDK QAAKIQEQENLLRAAVNFGE
Sbjct: 181 SRQGPAILPTLDKGQAAKIQEQENLLRAAVNFGE 214

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BLAST of Cla010950 vs. TrEMBL
Match: A0A061G8Z4_THECC (Mediator subunit 8 isoform 3 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92
Identity = 179/214 (83.64%), Postives = 192/214 (89.72%), Query Frame = 1


Query: 4   MDGGVQNQPQQQQPLPAQQVVV-AERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDV 63
           M+G +Q+  QQQQ     QVV  AERLNQAVQQQLNLE+LK RA +LFKAISRILEDFD 
Sbjct: 1   MEGMIQDPSQQQQAQQKNQVVAGAERLNQAVQQQLNLESLKTRAISLFKAISRILEDFDA 60

Query: 64  YGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLSSK 123
           Y RTNTTPKW DILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAEN++ILPVMLSSK
Sbjct: 61  YSRTNTTPKWLDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENASILPVMLSSK 120

Query: 124 LLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYCFG 183
           LLPEME EDN KREQLL GMQN+P+ +QIEKLKTRI+MIGAACESAEK+LA+TRKAYCFG
Sbjct: 121 LLPEMETEDNLKREQLLQGMQNLPIPSQIEKLKTRIDMIGAACESAEKVLADTRKAYCFG 180

Query: 184 MRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
            RQGPAI PTLDK QAAKIQEQENLLRAAVNFGE
Sbjct: 181 SRQGPAILPTLDKGQAAKIQEQENLLRAAVNFGE 214

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BLAST of Cla010950 vs. TrEMBL
Match: A0A061GGZ8_THECC (Mediator subunit 8 isoform 2 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92
Identity = 179/214 (83.64%), Postives = 192/214 (89.72%), Query Frame = 1


Query: 4   MDGGVQNQPQQQQPLPAQQVVV-AERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDV 63
           M+G +Q+  QQQQ     QVV  AERLNQAVQQQLNLE+LK RA +LFKAISRILEDFD 
Sbjct: 1   MEGMIQDPSQQQQAQQKNQVVAGAERLNQAVQQQLNLESLKTRAISLFKAISRILEDFDA 60

Query: 64  YGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLSSK 123
           Y RTNTTPKW DILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAEN++ILPVMLSSK
Sbjct: 61  YSRTNTTPKWLDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENASILPVMLSSK 120

Query: 124 LLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYCFG 183
           LLPEME EDN KREQLL GMQN+P+ +QIEKLKTRI+MIGAACESAEK+LA+TRKAYCFG
Sbjct: 121 LLPEMETEDNLKREQLLQGMQNLPIPSQIEKLKTRIDMIGAACESAEKVLADTRKAYCFG 180

Query: 184 MRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
            RQGPAI PTLDK QAAKIQEQENLLRAAVNFGE
Sbjct: 181 SRQGPAILPTLDKGQAAKIQEQENLLRAAVNFGE 214

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BLAST of Cla010950 vs. TrEMBL
Match: V4S114_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025265mg PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 9.8e-92
Identity = 177/216 (81.94%), Postives = 192/216 (88.89%), Query Frame = 1


Query: 1   MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60
           +A  D   Q Q QQQQ +P Q V V ERLNQAV QQLNLEA+K RA +LFKAISRILEDF
Sbjct: 7   VAMQDQSQQQQQQQQQLVPPQPVAV-ERLNQAVVQQLNLEAVKTRAISLFKAISRILEDF 66

Query: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120
           D Y RTNTTPKWQDILGQYSMVNLELFNIVDEI+KVSKAFVVHPKNVNAEN+TILPVMLS
Sbjct: 67  DAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLS 126

Query: 121 SKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180
           SKLLPEME++DNSKREQLLLGMQN+P+ +QIEKLK+RI+MIGAACESAEK+LA+TRKAYC
Sbjct: 127 SKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYC 186

Query: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
           FG RQGP I PTLDK QA KIQEQENLLRAAVN GE
Sbjct: 187 FGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGE 221

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BLAST of Cla010950 vs. NCBI nr
Match: gi|449453344|ref|XP_004144418.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111
Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 1   MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60
           MAT+DG VQNQPQQQQPLPAQQVV AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120
           DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS
Sbjct: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120

Query: 121 SKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180
           SKLLPEMEV+DNSKREQLLLGM NMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC
Sbjct: 121 SKLLPEMEVDDNSKREQLLLGMHNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180

Query: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
           FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE
Sbjct: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 216

[Close]

BLAST of Cla010950 vs. NCBI nr
Match: gi|778682360|ref|XP_011651696.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111
Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 1   MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60
           MAT+DG VQNQPQQQQPLPAQQVV AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120
           DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS
Sbjct: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120

Query: 121 SKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180
           SKLLPEMEV+DNSKREQLLLGM NMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC
Sbjct: 121 SKLLPEMEVDDNSKREQLLLGMHNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180

Query: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
           FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE
Sbjct: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 216

[Close]

BLAST of Cla010950 vs. NCBI nr
Match: gi|700203287|gb|KGN58420.1| (hypothetical protein Csa_3G640620 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111
Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1


Query: 1   MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60
           MAT+DG VQNQPQQQQPLPAQQVV AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120
           DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS
Sbjct: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120

Query: 121 SKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180
           SKLLPEMEV+DNSKREQLLLGM NMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC
Sbjct: 121 SKLLPEMEVDDNSKREQLLLGMHNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180

Query: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
           FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE
Sbjct: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 216

[Close]

BLAST of Cla010950 vs. NCBI nr
Match: gi|659130301|ref|XP_008465097.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo])

HSP 1 Score: 409.8 bits (1052), Expect = 3.5e-111
Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 1   MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60
           MAT+DG VQNQPQQQQPLPAQQVV AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120
           DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS
Sbjct: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120

Query: 121 SKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180
           SKLLPEMEV+DNSKREQLLLGM NMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC
Sbjct: 121 SKLLPEMEVDDNSKREQLLLGMHNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180

Query: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
           FGMRQGPAI PTLDKAQAAKIQEQENLLRAAVNFGE
Sbjct: 181 FGMRQGPAITPTLDKAQAAKIQEQENLLRAAVNFGE 216

[Close]

BLAST of Cla010950 vs. NCBI nr
Match: gi|659130303|ref|XP_008465098.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis melo])

HSP 1 Score: 409.8 bits (1052), Expect = 3.5e-111
Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 1   MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60
           MAT+DG VQNQPQQQQPLPAQQVV AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120
           DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS
Sbjct: 61  DVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLS 120

Query: 121 SKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180
           SKLLPEMEV+DNSKREQLLLGM NMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC
Sbjct: 121 SKLLPEMEVDDNSKREQLLLGMHNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYC 180

Query: 181 FGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGE 217
           FGMRQGPAI PTLDKAQAAKIQEQENLLRAAVNFGE
Sbjct: 181 FGMRQGPAITPTLDKAQAAKIQEQENLLRAAVNFGE 216

The following BLAST results are available for this feature:

BLAST of Cla010950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED8_ARATH	1.1e-77	69.19	Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cla010950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8Z2_CUCSA	8.5e-112	97.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G640620 PE=4 SV=1	[more]
A0A061GA94_THECC	1.5e-92	83.64	Mediator subunit 8 isoform 1 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1	[more]
A0A061G8Z4_THECC	1.5e-92	83.64	Mediator subunit 8 isoform 3 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1	[more]
A0A061GGZ8_THECC	1.5e-92	83.64	Mediator subunit 8 isoform 2 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1	[more]
V4S114_9ROSI	9.8e-92	81.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025265mg PE=4 SV=1	[more]

BLAST of Cla010950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453344\|ref\|XP_004144418.1\|	1.2e-111	97.69	PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cuc...	[more]
gi\|778682360\|ref\|XP_011651696.1\|	1.2e-111	97.69	PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cuc...	[more]
gi\|700203287\|gb\|KGN58420.1\|	1.2e-111	97.69	hypothetical protein Csa_3G640620 [Cucumis sativus]	[more]
gi\|659130301\|ref\|XP_008465097.1\|	3.5e-111	97.22	PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cuc...	[more]
gi\|659130303\|ref\|XP_008465098.1\|	3.5e-111	97.22	PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cuc...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU50474	watermelon EST collection version 2.0	transcribed_cluster
WMU66645	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010950	Cla010950.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU50474	WMU50474	transcribed_cluster
WMU66645	WMU66645	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 25..45 scor
None	No IPR available	PANTHER	PTHR35552	FAMILY NOT NAMED	coord: 1..235 score: 2.7
None	No IPR available	PANTHER	PTHR35552:SF1	SUBFAMILY NOT NAMED	coord: 1..235 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010950	Lsi07G006760	Bottle gourd (USVL1VR-Ls)	lsiwmB444

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010950	Cucurbita maxima (Rimu)	cmawmB234
Cla010950	Cucurbita moschata (Rifu)	cmowmB220
Cla010950	Watermelon (Charleston Gray)	wcgwmB372
Cla010950	Cucurbita pepo (Zucchini)	cpewmB602
Cla010950	Watermelon (97103) v2	wmwmbB174
Cla010950	Wax gourd	wgowmB191