WMU66645 (transcribed_cluster) Watermelon (97103) v1

NameWMU66645
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Descriptionmediator subunit 8
LocationChr7 : 31464586 .. 31465033 (-)
Sequence length445
The following sequences are available for this feature:

transcribed_cluster sequence

ATCAATCGGAGCACCGCAGCAAGCCTGGCCTTGCAGCCAGACCCCGAGCAAGATCTACACTCGCCGTTATCGTTGCATGCTATTGGCATCAAACAGGGCAACTGGTGTCTTTAGCTAATGGCAACCATGGACGGGGGGGTGCAGAATCAGCCTCAGCAGCAACAGCCTCTCCCGGCGCAGCAGGTGGTTGTCGCGGAAAGACTTAACCAGGCAGTACAGCAACAGTTGAACCTAGAGGCTCTGAAGAATCGAGCTACTACTCTATTTAAAGCCATCTCTCGTATCCTCGAAGATTTTGATGTCTACGGTCGCACCAATACCACACCCAAATGGTCTACTTTCATCTTTCGCATTGTTTCCTTTTGTGATATTTTCCAAATTTGCTTGAATTTAAAATTCCTGATCGCCTTTCGATTGATAGAAAACTACTTGTGTTGTTAGAACG
BLAST of WMU66645 vs. TAIR10
Match: AT2G03070.1 (AT2G03070.1 mediator subunit 8)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1

Query: 193 AERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDVYGRTNTTPKWSTFI 252
           AE+LN  ++++LNLE+LK RA +L KAI+RILEDFD YGRTNTTPKW   +
Sbjct: 14  AEKLNPKLEKELNLESLKTRAVSLAKAIARILEDFDAYGRTNTTPKWQDIL 64

Query: 253 312
           
Sbjct: 74  64

Query: 313 346
           
Sbjct: 134 64

BLAST of WMU66645 vs. Swiss-Prot
Match: MED8_ARATH (Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN=MED8 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1

Query: 193 AERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDVYGRTNTTPKWSTFI 252
           AE+LN  ++++LNLE+LK RA +L KAI+RILEDFD YGRTNTTPKW   +
Sbjct: 14  AEKLNPKLEKELNLESLKTRAVSLAKAIARILEDFDAYGRTNTTPKWQDIL 64

Query: 253 312
           
Sbjct: 74  64

Query: 313 346
           
Sbjct: 134 64

BLAST of WMU66645 vs. NCBI nr
Match: gi|449453344|ref|XP_004144418.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 52/76 (68.42%), Postives = 54/76 (71.05%), Query Frame = 1

Query: 118 MATMDGGXXXXXXXXXXXXXXXXXXAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 177
           MAT+DG                   AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 178 DVYGRTNTTPKWSTFI 237
           DVYGRTNTTPKW   +
Sbjct: 61  DVYGRTNTTPKWQDIL 76

Query: 238 297
           
Sbjct: 121 76

Query: 298 346
           
Sbjct: 181 76

BLAST of WMU66645 vs. NCBI nr
Match: gi|778682360|ref|XP_011651696.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 52/76 (68.42%), Postives = 54/76 (71.05%), Query Frame = 1

Query: 118 MATMDGGXXXXXXXXXXXXXXXXXXAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 177
           MAT+DG                   AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 178 DVYGRTNTTPKWSTFI 237
           DVYGRTNTTPKW   +
Sbjct: 61  DVYGRTNTTPKWQDIL 76

Query: 238 297
           
Sbjct: 121 76

Query: 298 346
           
Sbjct: 181 76

BLAST of WMU66645 vs. NCBI nr
Match: gi|700203287|gb|KGN58420.1| (hypothetical protein Csa_3G640620 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 52/76 (68.42%), Postives = 54/76 (71.05%), Query Frame = 1

Query: 118 MATMDGGXXXXXXXXXXXXXXXXXXAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 177
           MAT+DG                   AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 178 DVYGRTNTTPKWSTFI 237
           DVYGRTNTTPKW   +
Sbjct: 61  DVYGRTNTTPKWQDIL 76

Query: 238 297
           
Sbjct: 121 76

Query: 298 346
           
Sbjct: 181 76

BLAST of WMU66645 vs. NCBI nr
Match: gi|659130303|ref|XP_008465098.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 52/76 (68.42%), Postives = 54/76 (71.05%), Query Frame = 1

Query: 118 MATMDGGXXXXXXXXXXXXXXXXXXAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 177
           MAT+DG                   AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 178 DVYGRTNTTPKWSTFI 237
           DVYGRTNTTPKW   +
Sbjct: 61  DVYGRTNTTPKWQDIL 76

Query: 238 297
           
Sbjct: 121 76

Query: 298 346
           
Sbjct: 181 76

BLAST of WMU66645 vs. NCBI nr
Match: gi|659130301|ref|XP_008465097.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 52/76 (68.42%), Postives = 54/76 (71.05%), Query Frame = 1

Query: 118 MATMDGGXXXXXXXXXXXXXXXXXXAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 177
           MAT+DG                   AERLNQAVQQQLNLEALKNRATTLFKAISRILEDF
Sbjct: 1   MATIDGAVQNQPQQQQPLPAQQVVFAERLNQAVQQQLNLEALKNRATTLFKAISRILEDF 60

Query: 178 DVYGRTNTTPKWSTFI 237
           DVYGRTNTTPKW   +
Sbjct: 61  DVYGRTNTTPKWQDIL 76

Query: 238 297
           
Sbjct: 121 76

Query: 298 346
           
Sbjct: 181 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT2G03070.11.2e-1364.71 mediator subunit 8[more]
Match NameE-valueIdentityDescription
MED8_ARATH2.1e-1264.71Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
gi|449453344|ref|XP_004144418.1|3.3e-1868.42PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cuc... [more]
gi|778682360|ref|XP_011651696.1|3.3e-1868.42PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cuc... [more]
gi|700203287|gb|KGN58420.1|3.3e-1868.42hypothetical protein Csa_3G640620 [Cucumis sativus][more]
gi|659130303|ref|XP_008465098.1|3.3e-1868.42PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cuc... [more]
gi|659130301|ref|XP_008465097.1|3.3e-1868.42PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cuc... [more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla010950Cla010950gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0149737S2_0149737EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 64..84
scor