Cla010950.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAACCATGGACGGGGGGGTGCAGAATCAGCCTCAGCAGCAACAGCCTCTCCCGGCGCAGCAGGTGGTTGTCGCGGAAAGACTTAACCAGGCAGTACAGCAACAGTTGAACCTAGAGGCTCTGAAGAATCGAGCTACTACTCTATTTAAAGCCATCTCTCGTATCCTCGAAGATTTTGATGTCTACGGTCGCACCAATACCACACCTAAATGGTCTACTTTCATCTTTCGCATTGTTTCCTTTTGTGATATTTTCCAAATTTGCTTGAATTTAAAATTCCTGATCGCCTTTCGATTGATAGAAAAACTAACTTTGTGTTGTTAGAACGCTTAGAATCGTTATCTTTTTTCTTGAGGTTTTGTACGGATGACCTCTTCAAGAGGGCCTTTATGACTAATGACACGTTCCTTATAAACGTAAGAAATCTTACTTCAGATCCCACCACCGCATTTTTACAACATTTTACAACATATAGCTTTAGTGATGACCATATTTAGATGACCATATTTATCATAACCCTAACGTGATCGCGATCAACTTACATTTTCATCACGGATTTCCCATAAATATAAGTGAGATGTTCATGACCGCAGTCTTTATAACGTATCGCGTTAGGGATGGTCATGTGTCGTTCTAACGCGATTATCGCAATATCATTTTTAACGATTTCCCCCTTGAATATAGGGTGAGGAAAACTCAATCACAATCTCGTTATGGCCACAATAAATATGTTATCCCTAATGTGATAAGTTATAAAAAAGCAATAGTGCGGTCACGTCAAAGGTTATATTTCATACATTTGTGTGGGGTGGGTTATCAATCATAAAAGCTCTTGTGAGAGGGTCACCCATACAAAAAACTCTTTTTTCTTTTTGCTGGGTAATAACAGACAATATAATAGGGGGAGGAGGAGGGCTCGAGAGTGTAGCATTTTTTATTTTGCTTTGTCTACACTTCCTATAATAGCCTGTTAGGTGTTAGAAAGTAATTTTCCCCCTATCTTGTGGACTTACATGTACGGATTATTTTTCTAAACATCAAAGCGTCTTAATATCTATCTATCAATCTATCTCTATATATTTCACAATTTTCCTCATCTGGCTGACTGTATAGTTGATTTTTACACCAGGCAAGACATACTGGGGCAATATTCTATGGTGAATCTCGAGCTTTTCAATATTGTTGATGAAATTAAGAAAGTTTCAAAGGCTTTTGTTGTACATCCAAAGAATGTTAATGCAGAGAATTCTACAAGTATGCCCCTGCATCCTTTCCAAGTATTTGATTAAGTAAAAGGAAAAATGATAAGTTTCTGTTCCGCTTGAAATTACTTCATAAAGACATTGGGATAATGTTTGGTTGTTTATTATGAACTCCTTCCTTGAGGGAAGGCAATTAGTTTTTAATTCTTTTTTTTTTTTGTGAGTTGGGAGGTAGTTGTTAAGTCTATCAGCAGAGAGGGTATTTGGAGCTTGGAAACTTGAGACTTCGTAATAAAGCCCTGTTGGCCAAGTGGTTGTGGCACTTTCCTCATGAGCTTGAAGCTTTATGGAGTAGGATTATCGGTAGTGAGTATGGCCCACATCCCTTTGAATGGTTTTTGAGCGGGGTTAAAGGCACACATCGGAATCTATGGAATTGGTATTTCCTTGGAGCATCTTTCTTTCTCTCCTCTCGTCTATTGCGTGGTGGGTGATGGAAAGGAATCGTATTTCTGAGAAGACCAGTGGGTGGGGGATAGATCCCCATGTTGTAGATTTCCTTAGTTATACTGTTTATATTCTCTTAAAATTCATTTTGTGTCTATTTTTTTCAGTGTGGTCGACAAGCTTTGTTTTGTTTTCTTTTGGGATTTGACGAGCGTTGTCTGTTAGGGAAACTGTTGAGATTGTCCTTGATTGGAGAGGTCTCCTTTAGTAGTAGAAGGAGGGATGTTCGTTTATGGAGTCTTGACCCTTTGGAGGGTTTCTCTTATAAATCCTTATTTTGTTTATTATTAGACCTATCTCCCCTTAGCGAGTCTGTCTTTGATTTCTTGTGGAGGATTAGGATACCAAAGAAAGTCATGTTCTTTGTTTGGCAAGTCTGCTTGGCCACGTGAAAATCTTAGTTTGGTTGTCGAGGATGTTGTCTTCGTTAGTGGGTCCTTTTTGTTGTATTCTTTGACGGAAGGCGGAGGAAGACTTGAATCACCTTCTCTTGAGCTGTGAGTTTTCTAGATAAGGTTGGAACTACTTATTTTAGGAGTTTGATTTTGTCTATGCTCGTCAGAGTAGTATTAGATACTTGATCGGGGAGTTCCTTCTCAATCCACTTTTGTTTGGGTAGGGTCACTTGTGGCTCGCTTGAGTGTGCTCTCTTTTATGGGATATTTGGGGGTGAGAGAAATAACGAAGTGTTTAGGAGGGTTAAAAAGGAATTGAGTGATCTCTAGTCTTTGTTGAAGTTTCATATTTCTTCATTTAATTTGCTGGAAAATGGTTTCTCAAGCTCAAAATTCTGGAGATCTTGGTCTTGGAGCTTTGAAACATAGAAATCTTGCCCTTATAGCTAAATGGGGGTGGCGTTTTATTCATGATCCAAATTCTTTATGGAGACAAGTGATAGTGAGTATTCATGGTTCTCAAGACTTCCAATGGCACTCACTTGGGAGAAATAATTTGAGTTTTAGAAGCCCTTGGATGAGCATCTCTAGAACATTGAAAAAAAAGTGGAACATTTGGCCATTTTTATCTCAAGAAATGGTCAACAAATCGACTCTTGGACAGACCCTTGGGCTAATAATTCTTCACTCAAGGTACTTTTTCCTCGTTTATTTGCATTATCTCGCAGTCAAGATGGTTTGGTGTCCTCCTTTTAGGACTTCTCTACCTCTTTCATAGAGTTTTCCATTTCGGTGTTCCTTCAAGGATGACGAGATAGTTAATTTCCAGAATTTAATGCAGTTACTTCCAAGTTTATTGTTTCTATTAATGATGATTCTAAAAAATGGTCCATTGAATCCTCTGGAAATTTCTCACTTAAATCATTGACAGGGTTTTTGGATTCTTCCTCTCCTATGGATAAGGCTTTAGTTGGTGCATTATGAAGGTCCGAAAGGTCAAAGCGTATTAATATTTTGATTTGGATTATGCTCAATGGTAATCTGAATATGGTTGGAATTTTACGGAGAAAATCTGCTTACAAGTGATTACTTCCTTCCATATGCTTCTTGTGTTACAAGGCAGGGGAATCTCTCAATCATCTACTTTTTGAGTGTGTTTATGCTTCTTCATGTTGGTTCAAGCCTTTTCATATCTTCTACATTCATTGGGTCTTCTCAAATATTTTTAAGGACAATGTTCTTCAAGTTCTTACTAGAATTTGGTTAGAACTCTACCTTCTCTCATTTTGATTGTTGGTTCAGCCTCTTATAAACCGTCATCTTGGTGTTGTTTATCATTCCACGGTTACTTAATTCAAGACATTTCGCATTGTTGGGCTCTTCTATCTTTTCTCATTTTTGAAATGTTTTATTTTGTTCTTGTTCTTAACAGGATTTTGGTGTTCCACCTTGTTCTATCTTCTCAATTTGTTCTTTTGGTTCTTTTGCCTTTTGTCCTATTCTTCTTTAGTCTCTTCTCTTTTTCATTTGCTTAATGGAAATCCCGAATCTTTTTCAAAAAAATGTTAGGTACTTAAGTACCTTGGAGAACTACACCCCAAAAGCTAGCTATTGAGGTGGAGAGCCAAGTAACTTAAGTACCATATTGGTCATCCCACTCTAACCAATGTGGGATAAAGATGGCCCATACTACCTTGGTTCCTAACAATCCCCATCCTCGGAAAGCCGACATCTTGGCGACTACTATGACGGTATTTCACTCGGCCACACCTGGTCAGAACCCTCCGTCAGTTCCATTCCGGAACATCAACAACCAACTTTGATACCATTGTTAGGTACTTAAGTACCTTGGAGAACCACACTCTAAAAACTAGCATTGAGGTGGGAGAGCCAAGCCACTTAAGTACCACATTGGTCATCCCATTCTAACCAATGTGGGACAAAGGTAACCCATACTACCTTGGTTCCTAATAAAAAAGTAGAGTTTTGTTCTTACTCTCAAGGCTTTGTAATCCTAGCCTTCCATTCTCCAACGGAGGAATAATAATATTTTCTCATTGAATAAGATGTATACCTGTTCTATCACAATGTCCTTTTCAAAGAAACTTTTAAGAAATGCTCTCCAAGGACTGAATCACCTTGAAAGGCATGACATGAGGAAAACGAGAGATTTAATAGTTTGGCTTATAGCAAGTCTCCCTCCTCATAAAATAGAAAAGTTTTTCCACCTGTTTCTGTAATGCTTGAAAAGGTTTTTGTTGTCTAAAATCAGCCTGCTAAGTATTGCACATGATCCCTCAACTAGTATTTTAAGAGAAAGGAAAATGGAACAATCATTCATTGATTTGTAAAATTTTGATTTCCACTAATTTTTCTTCCTTTTTGTGAGCCCAGTACTACCAGTTATGTTGTCCTCAAAACTATTGCCTGAGATGGAGGTAGAAGACAATTCAAAACGAGAGCAGTTGCTTCTTGGGATGCAAAACATGCCAGTGTCTACTCAGATTGAGAAATTAAAGGTACTAGAAGTTCGTTAAATAACTATAGGCCGTAGAACTCGTTGAGTTCTAAAGAAATTCACTAAATCACATACTTTCTTATGTATCTGGCATTTAGGTTTACTTTTCTTACAGACTAGAATTGAAATGATTGGAGCAGCCTGTGAAAGTGCTGAAAAAATATTAGCTGAAACTCGGAAAGCATATTGTTTCGGGATGCGTCAAGGGCCAGCGATAGCTCCAACTTTAGATAAGGCTCAAGCTGCAAAAATTCAGGAGCAAGAGAATCTACTCCGAGCTGCTGTTAACTTTGGCGAAGGTAATATTTTATTACTTTTATAGTTGTTGATTGATATCTTAGTTTAAATTAGTTGTAGTTCATATATTGTTTAGTACTGTATCATTGATAAAATAAAAAGAGACTAATGCTCAAATTACTACAAAACAATATATACAAAAATATCAAATACAACCAATAATAGCACTTGAAAAAAACATAGAAAGCCTTTGATAACAACTAAGCAGAGAGAACAATAAATAGACAACCAGCAAAGAGAAAAAGTGAACATTGTACAAAGCTCCAAATCAAAGATCTGAAAGCCAGAACAAAAGCTTAGAAAAAACTTGTCAAAGTTGAGCCGACAATGAAGAATGCTAATAAAACACATAAAATGTAGTGTATAAACGGGAGTGTTCTTGAAATTGTTAGAATCACTTTTGCCATGTTACTAATCACTTCTAAACACACCTTTATTCACTCAAAATTAATTTAATATTTAATTTTATACTTCTAAATGCAATTTTCATATTATCCAAATTGGTTTTGAATTATTAACAACATGTTTAGAGTGATTTTGAAAATGGAGTGATTTTAACTATTTCAAAATCATTCTCAAACATGCTTGTTAATAAACGATGGAAGCAATTTTTCCTCTCTACTTCAATCAATGCTCCAAGAACAAAAGACACAATGTCATCCAACAATAGATCTCAGAACTGGTGAGGTAGATGTACAACCTTAAGGGCTTGGGTTGTTCAAAACTTAACACTAGAACCAAGATGTATTTTGGCCACAATTTCCACAGAATTTCTAGCGACCAAACTTGATAAGTTTTTTTTTCTTTCTTTTTATAACTTCAAGTTCAAACATTCAGCTAAAACCTCTGCACCAACTCTTGAAGAAGCACAAACAAACCGAGCTAAAACAAAATGGTCCTTATTCTTAAAGACCAACTCCCATTAGCCAAATGTATGATTTACTCCTTTAAGACCTTCTCAAAATAACAAAATCAGGAATCCTTCAAAGGACTAAATCATCTTAGCTGGCAAAAAGGATGAAAAATAGGGGAGGAAACGGTTCGATTTTGCTATTTTTTAAAAAAATATGTATATATATATTTAATTAAAATGGTTTGGGATGAGGCAAATGTAAGTCTTGTTTAAACTAGCATTGATGATGCCATTCCTAAAGAAATCTTGGAAAACTCTCAAGATATCGGATTTAAGGATGTTTCAAGACTTTTTAAAGAATTCCGTTGTAAAACCGTCCGGTCCCGGTGTTTTGTTCGTCCCCAAATCATGGTCAGCTTGTAAGATTTCTGCCTCTGTGAACTCCTTTTCAAGGTCTTCAGCTTGTTGATTAGAAGGTAGCTTCCCAGTTGAGGTTAGTTGGAATGTACCTGTAACCCTCCATTTTAGTGTATAATTCCTTATAGAATCGAAGGAATTCCCCTTCAATTTCAGAATCTGTAATTAAGCTTTTACATTGTACTTGTTGCTCACTTTTCCTATGTATTTTCTGTTTTCTCCTTTCCTTATTTTTGTTTCCTTAGCATTAATCTCTTTTCATTTTTCTCGATGAAAAGTTTTGTATCCTTTAAAAAAAAAAATCATAAATTTTGTAATTATTTTTAGAAATTAATTAAGAAAATTTTGGATATCAAAGTTTTTCATATTCTCTTACATTTAATTATAATTAACAATGGAATTTCAGTAGTTTTAAATAAGTCTAAAAAGTAAAAGTGTAATTATAAGTCACCACTCAACCATTTATTAATAAAGAAACTCAAATAAGCTTTGTACTTAACTAAAAGGAATGAGTGAAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAAGCTCCTAACGAATTGGAATTCAGAAACCATTCTTTCATTCCCCCTAATCGTCCGAAATTGCTGGCACATTTGGCATCCTTCCTTGAAGATTGTGATCTTGTCTTTGGATAG ATGGCAACCATGGACGGGGGGGTGCAGAATCAGCCTCAGCAGCAACAGCCTCTCCCGGCGCAGCAGGTGGTTGTCGCGGAAAGACTTAACCAGGCAGTACAGCAACAGTTGAACCTAGAGGCTCTGAAGAATCGAGCTACTACTCTATTTAAAGCCATCTCTCGTATCCTCGAAGATTTTGATGTCTACGGTCGCACCAATACCACACCTAAATGGCAAGACATACTGGGGCAATATTCTATGGTGAATCTCGAGCTTTTCAATATTGTTGATGAAATTAAGAAAGTTTCAAAGGCTTTTGTTGTACATCCAAAGAATGTTAATGCAGAGAATTCTACAATACTACCAGTTATGTTGTCCTCAAAACTATTGCCTGAGATGGAGGTAGAAGACAATTCAAAACGAGAGCAGTTGCTTCTTGGGATGCAAAACATGCCAGTGTCTACTCAGATTGAGAAATTAAAGACTAGAATTGAAATGATTGGAGCAGCCTGTGAAAGTGCTGAAAAAATATTAGCTGAAACTCGGAAAGCATATTGTTTCGGGATGCGTCAAGGGCCAGCGATAGCTCCAACTTTAGATAAGGCTCAAGCTGCAAAAATTCAGGAGCAAGAGAATCTACTCCGAGCTGCTGTTAACTTTGGCGAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAAGCTCCTAACGAATTGGAATTCAGAAACCATTCTTTCATTCCCCCTAATCGTCCGAAATTGCTGGCACATTTGGCATCCTTCCTTGAAGATTGTGATCTTGTCTTTGGATAG ATGGCAACCATGGACGGGGGGGTGCAGAATCAGCCTCAGCAGCAACAGCCTCTCCCGGCGCAGCAGGTGGTTGTCGCGGAAAGACTTAACCAGGCAGTACAGCAACAGTTGAACCTAGAGGCTCTGAAGAATCGAGCTACTACTCTATTTAAAGCCATCTCTCGTATCCTCGAAGATTTTGATGTCTACGGTCGCACCAATACCACACCTAAATGGCAAGACATACTGGGGCAATATTCTATGGTGAATCTCGAGCTTTTCAATATTGTTGATGAAATTAAGAAAGTTTCAAAGGCTTTTGTTGTACATCCAAAGAATGTTAATGCAGAGAATTCTACAATACTACCAGTTATGTTGTCCTCAAAACTATTGCCTGAGATGGAGGTAGAAGACAATTCAAAACGAGAGCAGTTGCTTCTTGGGATGCAAAACATGCCAGTGTCTACTCAGATTGAGAAATTAAAGACTAGAATTGAAATGATTGGAGCAGCCTGTGAAAGTGCTGAAAAAATATTAGCTGAAACTCGGAAAGCATATTGTTTCGGGATGCGTCAAGGGCCAGCGATAGCTCCAACTTTAGATAAGGCTCAAGCTGCAAAAATTCAGGAGCAAGAGAATCTACTCCGAGCTGCTGTTAACTTTGGCGAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAAGCTCCTAACGAATTGGAATTCAGAAACCATTCTTTCATTCCCCCTAATCGTCCGAAATTGCTGGCACATTTGGCATCCTTCCTTGAAGATTGTGATCTTGTCTTTGGATAG MATMDGGVQNQPQQQQPLPAQQVVVAERLNQAVQQQLNLEALKNRATTLFKAISRILEDFDVYGRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTILPVMLSSKLLPEMEVEDNSKREQLLLGMQNMPVSTQIEKLKTRIEMIGAACESAEKILAETRKAYCFGMRQGPAIAPTLDKAQAAKIQEQENLLRAAVNFGEVTGEDINALFSQNEAPNELEFRNHSFIPPNRPKLLAHLASFLEDCDLVFG
BLAST of Cla010950 vs. Swiss-Prot
Match: MED8_ARATH (Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN=MED8 PE=1 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 1.1e-77 Identity = 146/211 (69.19%), Postives = 176/211 (83.41%), Query Frame = 1
BLAST of Cla010950 vs. TrEMBL
Match: A0A0A0L8Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G640620 PE=4 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 8.5e-112 Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1
BLAST of Cla010950 vs. TrEMBL
Match: A0A061GA94_THECC (Mediator subunit 8 isoform 1 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92 Identity = 179/214 (83.64%), Postives = 192/214 (89.72%), Query Frame = 1
BLAST of Cla010950 vs. TrEMBL
Match: A0A061G8Z4_THECC (Mediator subunit 8 isoform 3 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92 Identity = 179/214 (83.64%), Postives = 192/214 (89.72%), Query Frame = 1
BLAST of Cla010950 vs. TrEMBL
Match: A0A061GGZ8_THECC (Mediator subunit 8 isoform 2 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92 Identity = 179/214 (83.64%), Postives = 192/214 (89.72%), Query Frame = 1
BLAST of Cla010950 vs. TrEMBL
Match: V4S114_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025265mg PE=4 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 9.8e-92 Identity = 177/216 (81.94%), Postives = 192/216 (88.89%), Query Frame = 1
BLAST of Cla010950 vs. NCBI nr
Match: gi|449453344|ref|XP_004144418.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis sativus]) HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111 Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1
BLAST of Cla010950 vs. NCBI nr
Match: gi|778682360|ref|XP_011651696.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis sativus]) HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111 Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1
BLAST of Cla010950 vs. NCBI nr
Match: gi|700203287|gb|KGN58420.1| (hypothetical protein Csa_3G640620 [Cucumis sativus]) HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111 Identity = 211/216 (97.69%), Postives = 213/216 (98.61%), Query Frame = 1
BLAST of Cla010950 vs. NCBI nr
Match: gi|659130301|ref|XP_008465097.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo]) HSP 1 Score: 409.8 bits (1052), Expect = 3.5e-111 Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 1
BLAST of Cla010950 vs. NCBI nr
Match: gi|659130303|ref|XP_008465098.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis melo]) HSP 1 Score: 409.8 bits (1052), Expect = 3.5e-111 Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
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