Cla010284 (gene) Watermelon (97103) v1

Overview
NameCla010284
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 29885599 .. 29885817 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGCATGGTAGAGTCATGGATGAAGCAGCTTGGAAAGTGGAAGAACAGAGTTGAAGCTCAACGGAAGAAGAAGCCATTGATGTCCAAATCCAACCAATTACTGCCCCCAACACACCTCAAACAAACCACAGATTCCGATTCCGACGACACAGAAACCACCACCCTCTCCGAATCCACCATTTGTTTGCTCATGGATCGCTTTGCTCCCATGTAA

mRNA sequence

ATGTCGGGCATGGTAGAGTCATGGATGAAGCAGCTTGGAAAGTGGAAGAACAGAGTTGAAGCTCAACGGAAGAAGAAGCCATTGATGTCCAAATCCAACCAATTACTGCCCCCAACACACCTCAAACAAACCACAGATTCCGATTCCGACGACACAGAAACCACCACCCTCTCCGAATCCACCATTTGTTTGCTCATGGATCGCTTTGCTCCCATGTAA

Coding sequence (CDS)

ATGTCGGGCATGGTAGAGTCATGGATGAAGCAGCTTGGAAAGTGGAAGAACAGAGTTGAAGCTCAACGGAAGAAGAAGCCATTGATGTCCAAATCCAACCAATTACTGCCCCCAACACACCTCAAACAAACCACAGATTCCGATTCCGACGACACAGAAACCACCACCCTCTCCGAATCCACCATTTGTTTGCTCATGGATCGCTTTGCTCCCATGTAA

Protein sequence

MSGMVESWMKQLGKWKNRVEAQRKKKPLMSKSNQLLPPTHLKQTTDSDSDDTETTTLSESTICLLMDRFAPM
Homology
[Close]
BLAST of Cla010284 vs. TrEMBL
Match: A0A0A0LP24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-17
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 1   MSGMVESWMKQLGKWKNRVEAQ--RKKKPLMSKSNQLLPPTHLKQ---TTDSDSDDTETT 60
           MS MVESWM +LGKW+NRVEAQ    KKPLM KS QL    H KQ   T  +DSDDTET+
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQL-QTDHFKQPAKTHMADSDDTETS 96

Query: 61  TLSESTICLLMDRFAPM 73
            LSESTICLL+DRFAP+
Sbjct: 97  VLSESTICLLIDRFAPL 112

[Close]
BLAST of Cla010284 vs. NCBI nr
Match: gi|700206637|gb|KGN61756.1| (hypothetical protein Csa_2G237740 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-17
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 1   MSGMVESWMKQLGKWKNRVEAQ--RKKKPLMSKSNQLLPPTHLKQ---TTDSDSDDTETT 60
           MS MVESWM +LGKW+NRVEAQ    KKPLM KS QL    H KQ   T  +DSDDTET+
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQL-QTDHFKQPAKTHMADSDDTETS 96

Query: 61  TLSESTICLLMDRFAPM 73
            LSESTICLL+DRFAP+
Sbjct: 97  VLSESTICLLIDRFAPL 112

The following BLAST results are available for this feature:
BLAST of Cla010284 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP24_CUCSA4.8e-1767.53Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237740 PE=4 SV=1[more]
BLAST of Cla010284 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206637|gb|KGN61756.1|6.8e-1767.53hypothetical protein Csa_2G237740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU32968watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010284Cla010284.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU32968WMU32968transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla010284Cla97C09G179110Watermelon (97103) v2wmwmbB042
Cla010284Csa2G237740Cucumber (Chinese Long) v2cuwmB101
Cla010284ClCG09G017710Watermelon (Charleston Gray)wcgwmB008
Cla010284CSPI02G11810Wild cucumber (PI 183967)cpiwmB106
Cla010284Cucsa.109970Cucumber (Gy14) v1cgywmB154
Cla010284CmaCh02G004280Cucurbita maxima (Rimu)cmawmB548
Cla010284CmoCh20G008870Cucurbita moschata (Rifu)cmowmB502
Cla010284Lsi10G003260Bottle gourd (USVL1VR-Ls)lsiwmB043
Cla010284MELO3C034613.2Melon (DHL92) v3.6.1medwmB084
Cla010284CsaV3_2G014320Cucumber (Chinese Long) v3cucwmB113
Cla010284Bhi10G001673Wax gourdwgowmB358
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010284Wax gourdwgowmB250
Cla010284Watermelon (97103) v1wmwmB025
Cla010284Cucumber (Gy14) v1cgywmB131
Cla010284Cucumber (Gy14) v1cgywmB418
Cla010284Cucurbita maxima (Rimu)cmawmB082
Cla010284Cucurbita maxima (Rimu)cmawmB509
Cla010284Cucurbita moschata (Rifu)cmowmB076
Cla010284Cucurbita moschata (Rifu)cmowmB538
Cla010284Wild cucumber (PI 183967)cpiwmB463
Cla010284Wild cucumber (PI 183967)cpiwmB584
Cla010284Melon (DHL92) v3.5.1mewmB085
Cla010284Melon (DHL92) v3.5.1mewmB552
Cla010284Watermelon (Charleston Gray)wcgwmB117
Cla010284Cucumber (Chinese Long) v2cuwmB448
Cla010284Cucurbita pepo (Zucchini)cpewmB273
Cla010284Cucurbita pepo (Zucchini)cpewmB685
Cla010284Bottle gourd (USVL1VR-Ls)lsiwmB088
Cla010284Cucumber (Gy14) v2cgybwmB099
Cla010284Cucumber (Gy14) v2cgybwmB420
Cla010284Cucumber (Gy14) v2cgybwmB527
Cla010284Melon (DHL92) v3.6.1medwmB538
Cla010284Silver-seed gourdcarwmB0794
Cla010284Silver-seed gourdcarwmB0893
Cla010284Cucumber (Chinese Long) v3cucwmB474
Cla010284Watermelon (97103) v2wmwmbB008
Cla010284Watermelon (97103) v2wmwmbB021