CmaCh02G004280 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G004280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 2167646 .. 2167870 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAATGGTAGAATCATGGATGAGCGAGCTGGGGAAATGGAAGAACAGAGTCGAAGCTCAAAAGAAGAAGCCATTGATGTCCAAATCCAAGCTTTGTCACCAGCGAGACCTCAAAGAATCCGAAAACAACGTTGTCGTCTCTGCAGATTCCGATGACCGAGAAGCAACCTTGTCGGATTCCACCATTTGTTTGCTCATCGATCGCTTTGCTCCCTTGTGA

mRNA sequence

ATGGCAGCAATGGTAGAATCATGGATGAGCGAGCTGGGGAAATGGAAGAACAGAGTCGAAGCTCAAAAGAAGAAGCCATTGATGTCCAAATCCAAGCTTTGTCACCAGCGAGACCTCAAAGAATCCGAAAACAACGTTGTCGTCTCTGCAGATTCCGATGACCGAGAAGCAACCTTGTCGGATTCCACCATTTGTTTGCTCATCGATCGCTTTGCTCCCTTGTGA

Coding sequence (CDS)

ATGGCAGCAATGGTAGAATCATGGATGAGCGAGCTGGGGAAATGGAAGAACAGAGTCGAAGCTCAAAAGAAGAAGCCATTGATGTCCAAATCCAAGCTTTGTCACCAGCGAGACCTCAAAGAATCCGAAAACAACGTTGTCGTCTCTGCAGATTCCGATGACCGAGAAGCAACCTTGTCGGATTCCACCATTTGTTTGCTCATCGATCGCTTTGCTCCCTTGTGA

Protein sequence

MAAMVESWMSELGKWKNRVEAQKKKPLMSKSKLCHQRDLKESENNVVVSADSDDREATLSDSTICLLIDRFAPL
Homology
[Close]
BLAST of CmaCh02G004280 vs. TrEMBL
Match: A0A0A0LP24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-12
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 1   MAAMVESWMSELGKWKNRVEAQ---KKKPLMSKSKLCHQRDLKESENNVVVSADSDDRE- 60
           M+AMVESWM+ELGKW+NRVEAQ    KKPLM KSK       K+     +  ADSDD E 
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQLQTDHFKQPAKTHM--ADSDDTET 96

Query: 61  ATLSDSTICLLIDRFAPL 75
           + LS+STICLLIDRFAPL
Sbjct: 97  SVLSESTICLLIDRFAPL 112

[Close]
BLAST of CmaCh02G004280 vs. NCBI nr
Match: gi|700206637|gb|KGN61756.1| (hypothetical protein Csa_2G237740 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 1   MAAMVESWMSELGKWKNRVEAQ---KKKPLMSKSKLCHQRDLKESENNVVVSADSDDRE- 60
           M+AMVESWM+ELGKW+NRVEAQ    KKPLM KSK       K+     +  ADSDD E 
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQLQTDHFKQPAKTHM--ADSDDTET 96

Query: 61  ATLSDSTICLLIDRFAPL 75
           + LS+STICLLIDRFAPL
Sbjct: 97  SVLSESTICLLIDRFAPL 112

The following BLAST results are available for this feature:
BLAST of CmaCh02G004280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G004280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP24_CUCSA1.6e-1262.82Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237740 PE=4 SV=1[more]
BLAST of CmaCh02G004280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G004280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206637|gb|KGN61756.1|2.3e-1262.82hypothetical protein Csa_2G237740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G004280.1CmaCh02G004280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G004280Cucsa.109970Cucumber (Gy14) v1cgycmaB0254
CmaCh02G004280Cla010284Watermelon (97103) v1cmawmB548
CmaCh02G004280Csa2G237740Cucumber (Chinese Long) v2cmacuB588
CmaCh02G004280ClCG09G017720Watermelon (Charleston Gray)cmawcgB510
CmaCh02G004280CSPI02G11810Wild cucumber (PI 183967)cmacpiB593
CmaCh02G004280CmoCh20G008870Cucurbita moschata (Rifu)cmacmoB606
CmaCh02G004280CmoCh02G004290Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G004280Lsi10G003260Bottle gourd (USVL1VR-Ls)cmalsiB548
CmaCh02G004280Cp4.1LG05g12250Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G004280MELO3C034613.2Melon (DHL92) v3.6.1cmamedB614
CmaCh02G004280CsaV3_2G014320Cucumber (Chinese Long) v3cmacucB0701
CmaCh02G004280Cla97C09G179110Watermelon (97103) v2cmawmbB663
CmaCh02G004280Bhi10G001673Wax gourdcmawgoB0745
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G004280Cucumber (Chinese Long) v3cmacucB0751
CmaCh02G004280Watermelon (97103) v2cmawmbB619
CmaCh02G004280Wax gourdcmawgoB0739
CmaCh02G004280Wax gourdcmawgoB0762
CmaCh02G004280Cucurbita maxima (Rimu)cmacmaB469
CmaCh02G004280Cucurbita maxima (Rimu)cmacmaB510
CmaCh02G004280Cucumber (Gy14) v1cgycmaB0230
CmaCh02G004280Cucurbita moschata (Rifu)cmacmoB599
CmaCh02G004280Wild cucumber (PI 183967)cmacpiB634
CmaCh02G004280Cucumber (Chinese Long) v2cmacuB629
CmaCh02G004280Melon (DHL92) v3.5.1cmameB534
CmaCh02G004280Melon (DHL92) v3.5.1cmameB586
CmaCh02G004280Watermelon (Charleston Gray)cmawcgB531
CmaCh02G004280Watermelon (97103) v1cmawmB572
CmaCh02G004280Watermelon (97103) v1cmawmB586
CmaCh02G004280Cucurbita pepo (Zucchini)cmacpeB616
CmaCh02G004280Cucurbita pepo (Zucchini)cmacpeB626
CmaCh02G004280Bottle gourd (USVL1VR-Ls)cmalsiB562
CmaCh02G004280Cucumber (Gy14) v2cgybcmaB229
CmaCh02G004280Silver-seed gourdcarcmaB1105
CmaCh02G004280Silver-seed gourdcarcmaB1233