Cla009943 (gene) Watermelon (97103) v1

Overview
NameCla009943
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUbiquitin ligase (AHRD V1 **-- E5GB99_CUCME); contains Interpro domain(s) IPR004162 Seven in absentia protein
LocationChr5 : 33356410 .. 33358487 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACATAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGGTCTGTTGTCATCTTTTTAAGATCTTTTGAATGAAATTGTTTTCTTGTTTAGAGAGAGGGCCTGGGTGAAGTAGGTGGTGTCAATGATGGGCTGATGGAGTTGGTGGTGATGTTAGTTATGGAAAAGGTTTTGGTGGTGGGTTTGGAAGATTTAGGTTGTGTAGTTGAATTTGGTGGTGGGCCAGGCAGGGGATTCTGGTGGAGGAGCAAATGGACATCCCTTAACTTTTGAAAAATCTCTTTAATTAGAATATCAATACAACTTTGTTGTTATTACCACATGAAACTATTCTCATGGTTATGGAAGCGATTACATAAATATCTGTCAAGAGAATAACATAACAAAAACAAAAGCAGAGTGGAAGATGAGAAAGCAACCCACTCTAAACCTCCAATTGGCTTGAATTAAAAGAACTGTATAATTACAACATAAATTGGATACTGATTCCAAATAAGTAATATAATCCTGAACTCTCTTCAAAGAACCTATGAACAATGATCGTTTTCGTTCCACAGGTCACATAGAATTCCTCTAACCTAATTTGTCCACAAGATTTTGGCCTTCAACTTAAAGGCGACTCTGGAAAGCACCAATGTTGGGCAAACATATTCAGCAGTTTAACCAACAACTAGAAGCCATACTATACCTTAGAGAGAGAGATGATTTTGGGTCCTTTTCCTATACGAAATACACCGGTTTCGTTTGGATTAGTATAGCAGGTTAATGAAAAATCTTACTTTCTATTTGGAGGTAGAGAGCTGTTTTCCTCTGTAACCTCGACTAAGTGTTCTCCTTGTGTTTATGAGTAATGTGAAAGCTCTGGATTTTCCCCCCGTATTATTGTGAATACCATTTCTTTCTGGGATATATGACATTATTTTTGTATCTTGTATTCTTATGTCATTTAAAATTCTGTTGTTGCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTACAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAGGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTACTATTATTTTTCGTCTTATTTTGTCATGTTTTGGTTTTTGGCCTGTTGAACCTTGTTCAACATATGTTCAAATGGAAGTTTAATTTTTGATAGAAAAGGCTTTATGAGTTGAGAATAAACAGAATGACAGGGGACATGTCCTTTTTTATTAGATAGGGAGATCGGATTGTATATGTTTCGAATTATGAGAGGTCGGGCATGCAACTGATAACCATTTTTGTTTGATTTCTAGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTTTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA

mRNA sequence

ATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACATAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAGGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTTTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA

Coding sequence (CDS)

ATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACATAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAGGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTTTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA

Protein sequence

MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPFIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ
Homology
[Close]
BLAST of Cla009943 vs. Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 2.0e-93
Identity = 175/277 (63.18%), Postives = 195/277 (70.40%), Query Frame = 1 

Query: 31  ESVSDPARNGGKP--NIAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNR 90
           E+ S P ++G         S+ V ELLECPVC N MYPPIHQC NGHTLCS CK RV N 
Sbjct: 29  EANSKPTKSGSGSIGKFHSSNGVYELLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNT 88

Query: 91  CPTCRHELGNIRCLALEKVAASLELPF------IGDIPFLVAHLKDD------------- 150
           CPTCR+ELGNIRCLALEKVA SLE+P         DI    + LK +             
Sbjct: 89  CPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCQDIFPYYSKLKHEQHCRFRSYSCPYA 148

Query: 151 --------------------HKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYF 210
                               HKVDMH+G TFNHRYVKSNP EVENATWMLTVF+CFG+ F
Sbjct: 149 GSECSVTGDIPTLVDHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQF 208

Query: 211 CLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKV 267
           CLHFEAFQLGMAPVY+AFLRFMGD+NEAK +SYSLEVG + RK+ WQG+PRSIRDSHRKV
Sbjct: 209 CLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKV 268

[Close]
BLAST of Cla009943 vs. Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 343.2 bits (879), Expect = 2.5e-93
Identity = 182/290 (62.76%), Postives = 205/290 (70.69%), Query Frame = 1 

Query: 18  IDPPQDDDMMDVSESVSDPARNGGKPN-IAVSSSVRELLECPVCLNAMYPPIHQCSNGHT 77
           ID   DDD +      S     GG    I+ ++SV ELLECPVC N+MYPPIHQC NGHT
Sbjct: 6   IDSVIDDDEIHQKHQFSSTKSQGGATVVISPATSVYELLECPVCTNSMYPPIHQCHNGHT 65

Query: 78  LCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP-------FIGDIPFLVAHLKDD 137
           LCS CK RVHNRCPTCR ELG+IRCLALEKVA SLELP        +G  P+  + LK +
Sbjct: 66  LCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYNLGCLGIFPY-YSKLKHE 125

Query: 138 HKVDM------HNGS--------TF-------NH------------RYVKSNPQEVENAT 197
            + +       + GS        TF       +H            RYVKSNP+EVENAT
Sbjct: 126 SQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENAT 185

Query: 198 WMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQ 257
           WMLTVF CFGQYFCLHFEAFQLGMAPVY+AFLRFMGD+++A+NY+YSLEVGG+GRK  W+
Sbjct: 186 WMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWE 245

Query: 258 GVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 267
           G PRS+RDSHRKVRDS DGLIIQRNMALFFSGGD+KELKLRVTGRIWKEQ
Sbjct: 246 GTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQ 294

[Close]
BLAST of Cla009943 vs. Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 6.7e-78
Identity = 135/158 (85.44%), Postives = 144/158 (91.14%), Query Frame = 1 

Query: 109 ASLELPFIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQY 168
           A  E    GDIPFLVAHL+DDHKVDMH+G TFNHRYVKSNP+EVENATWMLTVF CFGQY
Sbjct: 154 AGSECSVTGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQY 213

Query: 169 FCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRK 228
           FCLHFEAFQLGMAPVY+AFLRFMGD+ EA+NY+YSLEVGG GRK++W+G PRS+RDSHRK
Sbjct: 214 FCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRK 273

Query: 229 VRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 267
           VRDS DGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ
Sbjct: 274 VRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 311


HSP 2 Score: 127.1 bits (318), Expect = 2.9e-28
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 1 

Query: 45  IAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLAL 104
           +  ++SV ELLECPVC N+MYPPIHQC NGHTLCS CK RVHNRCPTCR ELG+IRCLAL
Sbjct: 51  LPTTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLAL 110

Query: 105 EKVAASLELP 115
           EKVA SLELP
Sbjct: 111 EKVAESLELP 120

[Close]
BLAST of Cla009943 vs. Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.4e-77
Identity = 134/158 (84.81%), Postives = 144/158 (91.14%), Query Frame = 1 

Query: 109 ASLELPFIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQY 168
           A  E   +GDIPFLVAHL+DDHKVDMH GSTFNHRYVKSNP+EVENATWMLTVF CFGQY
Sbjct: 155 AGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQY 214

Query: 169 FCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRK 228
           FCLHFEAFQLGM PVY+AFLRFMGD+ +A++YSYSLEVGG+GRK+ W+G PRSIRDSHRK
Sbjct: 215 FCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRK 274

Query: 229 VRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 267
           VRDS DGLIIQRNMALFFSGGDRKELKLRVTG+IWKEQ
Sbjct: 275 VRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKEQ 312


HSP 2 Score: 123.6 bits (309), Expect = 3.2e-27
Identity = 57/74 (77.03%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 41  GKPNIAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIR 100
           G    A ++SV ELLECPVC  +MYPPIHQC NGHTLCS CK RVHNRCPTCR ELG+IR
Sbjct: 48  GPTATAPATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIR 107

Query: 101 CLALEKVAASLELP 115
           CLALEKVA SLELP
Sbjct: 108 CLALEKVAESLELP 121

[Close]
BLAST of Cla009943 vs. Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.7e-73
Identity = 129/158 (81.65%), Postives = 140/158 (88.61%), Query Frame = 1 

Query: 109 ASLELPFIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQY 168
           A  E    GDIP LV HLKDDHKVDMH+G TFNHRYVKSNP EVENATWMLTVF+CFG+ 
Sbjct: 151 AGSECSVTGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQ 210

Query: 169 FCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRK 228
           FCLHFEAFQLGMAPVY+AFLRFMGD+NEAK +SYSLEVG +GRK+ WQG+PRSIRDSHRK
Sbjct: 211 FCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPRSIRDSHRK 270

Query: 229 VRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 267
           VRDS DGLII RN+AL+FSGGDR+ELKLRVTGRIWKE+
Sbjct: 271 VRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308


HSP 2 Score: 122.9 bits (307), Expect = 5.4e-27
Identity = 56/74 (75.68%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 41  GKPNIAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIR 100
           GK  I  ++ V ELLECPVC N MYPPIHQC NGHTLCS CK RV N CPTCR+ELGNIR
Sbjct: 44  GKYGIHSNNGVYELLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIR 103

Query: 101 CLALEKVAASLELP 115
           CLALEKVA SLE+P
Sbjct: 104 CLALEKVAESLEVP 117

[Close]
BLAST of Cla009943 vs. TrEMBL
Match: A0A0L9V270_PHAAN (E3 ubiquitin-protein ligase OS=Phaseolus angularis GN=LR48_Vigan08g005200 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 7.6e-137
Identity = 237/273 (86.81%), Postives = 251/273 (91.94%), Query Frame = 1 

Query: 1   MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVC 60
           M+S+N +FDDIR+K +V DPPQ+++  DV E V+DP +   KPN  VSSSVRELLECPVC
Sbjct: 1   MASSNLFFDDIRSKVDV-DPPQNEESTDVGELVNDPGQTTLKPNGTVSSSVRELLECPVC 60

Query: 61  LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP------ 120
           LNAMYPPIHQCSNGHT+CSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP      
Sbjct: 61  LNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQEC 120

Query: 121 -FIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHF 180
             +GDIP+LVAHLKDDHKVDMHNGSTFNHRYVKSNP EVENATWMLTVFSCFGQYFCLHF
Sbjct: 121 SIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHF 180

Query: 181 EAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSF 240
           EAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKM+WQGVPRSIRDSHRKVRDSF
Sbjct: 181 EAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSF 240

Query: 241 DGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 267
           DGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ
Sbjct: 241 DGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 272

[Close]
BLAST of Cla009943 vs. TrEMBL
Match: A0A0D9X2G7_9ORYZ (E3 ubiquitin-protein ligase OS=Leersia perrieri PE=3 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.6e-118
Identity = 219/304 (72.04%), Postives = 236/304 (77.63%), Query Frame = 1 

Query: 3   SANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVCLN 62
           S+  Y DD R+  E+IDPP++++M+DV+E V D A+   KPN  VS +VRELLECPVCLN
Sbjct: 2   SSTTYLDDARS--EIIDPPKNEEMLDVTELVGDHAQLSPKPNAMVSGNVRELLECPVCLN 61

Query: 63  AMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP-------F 122
           AMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP        
Sbjct: 62  AMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNFGC 121

Query: 123 IGDIPFLVAHLKDDHKV---------------------------------DMHNGSTFNH 182
           +G  P+    LK + +                                  DMHNGSTFNH
Sbjct: 122 LGIYPY-YCKLKHESQCQYRPYTCPYAGSECTVAGDIQYLVSHLKDDHKVDMHNGSTFNH 181

Query: 183 RYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSY 242
           RYVKSNP EVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDD EAKNYSY
Sbjct: 182 RYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKNYSY 241

Query: 243 SLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRI 267
           SLEVGG+GRKM WQGVPRSIRDSHRKVRDS+DGLIIQRNMALFFSGGDRKELKLRVTGRI
Sbjct: 242 SLEVGGSGRKMTWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGDRKELKLRVTGRI 301

[Close]
BLAST of Cla009943 vs. TrEMBL
Match: A0A0E0LPB8_ORYPU (E3 ubiquitin-protein ligase OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 1.8e-117
Identity = 219/306 (71.57%), Postives = 237/306 (77.45%), Query Frame = 1 

Query: 1   MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVC 60
           M+SA  Y DD  +  EVIDPP++++M+DV+E V D  ++  KPN  VS +VRELLECPVC
Sbjct: 90  MASAT-YLDDAHS--EVIDPPKNEEMLDVTELVGDHTQHSPKPNAMVSGNVRELLECPVC 149

Query: 61  LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP------ 120
           LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP      
Sbjct: 150 LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNF 209

Query: 121 -FIGDIPFLVAHLKDDHKV---------------------------------DMHNGSTF 180
             +G  P+    LK + +                                  DMHNGSTF
Sbjct: 210 GCLGIYPY-YCKLKHESQCQYRPYTCPYAGSECTVAGDIQYLVSHLKDDHKVDMHNGSTF 269

Query: 181 NHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNY 240
           NHRYVKSNP EVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDD EAKNY
Sbjct: 270 NHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKNY 329

Query: 241 SYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTG 267
           SYSLEVGG+GRKM WQGVPRSIRDSHRKVRDS+DGLIIQRNMALFFSGGD+KELKLRVTG
Sbjct: 330 SYSLEVGGSGRKMTWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGDKKELKLRVTG 389

[Close]
BLAST of Cla009943 vs. TrEMBL
Match: A0A022RVJ7_ERYGU (E3 ubiquitin-protein ligase OS=Erythranthe guttata GN=MIMGU_mgv1a010565mg PE=3 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 1.8e-117
Identity = 215/306 (70.26%), Postives = 239/306 (78.10%), Query Frame = 1 

Query: 1   MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVC 60
           M++ N YF+D+R KPE+IDPP++DD++DV E+V++ + +  KPN+A+SS+VRELLECPVC
Sbjct: 4   MANGNSYFNDLRIKPEIIDPPENDDILDVGENVNEASESALKPNVAISSNVRELLECPVC 63

Query: 61  LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP------ 120
           LNAMYPPIHQCSNGHTLCSGCKPRV NRCPTCRHELGNIRCLALEKVAASLELP      
Sbjct: 64  LNAMYPPIHQCSNGHTLCSGCKPRVQNRCPTCRHELGNIRCLALEKVAASLELPCKYQTF 123

Query: 121 -FIGDIPFLVAHLKDD----------------------------HKVDMHNGSTFN---- 180
             +G  P+  + LK +                            H  D H     +    
Sbjct: 124 GCVGIYPY-YSKLKHESQCTYRPYNCPYAGSECSVVGDIPFLVSHLKDDHKVDMHSGTTF 183

Query: 181 -HRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNY 240
            HRYVKS+P EVENATWMLTVFSCFGQYFCLHFEAFQLGMA VYIAFLRFMGDD+EAKNY
Sbjct: 184 NHRYVKSDPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMASVYIAFLRFMGDDSEAKNY 243

Query: 241 SYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTG 267
           SYSLEVGGNGRKM WQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTG
Sbjct: 244 SYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTG 303

[Close]
BLAST of Cla009943 vs. TrEMBL
Match: B8B5J4_ORYSI (E3 ubiquitin-protein ligase OS=Oryza sativa subsp. indica GN=OsI_27193 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 3.0e-117
Identity = 216/300 (72.00%), Postives = 233/300 (77.67%), Query Frame = 1 

Query: 7   YFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVCLNAMYP 66
           Y DD  +  EVIDPP++++M+DV+E V D  ++  KPN  VS +VRELLECPVCLNAMYP
Sbjct: 6   YLDDAHS--EVIDPPKNEEMLDVTELVDDHTQHSPKPNAMVSGNVRELLECPVCLNAMYP 65

Query: 67  PIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP-------FIGDI 126
           PIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP        +G  
Sbjct: 66  PIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNFGCLGIY 125

Query: 127 PFLVAHLKDDHKV---------------------------------DMHNGSTFNHRYVK 186
           P+    LK + +                                  DMHNGSTFNHRYVK
Sbjct: 126 PY-YCKLKHESQCQYRPYTCPYAGSECTVAGDIQYLVSHLKDDHKVDMHNGSTFNHRYVK 185

Query: 187 SNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEV 246
           SNP EVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDD EAKNYSYSLEV
Sbjct: 186 SNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKNYSYSLEV 245

Query: 247 GGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 267
           GG+GRKM WQGVPRSIRDSHRKVRDS+DGLIIQRNMALFFSGGD+KELKLRVTGRIWKEQ
Sbjct: 246 GGSGRKMTWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQ 302

[Close]
BLAST of Cla009943 vs. NCBI nr
Match: gi|920707228|gb|KOM49225.1| (hypothetical protein LR48_Vigan08g005200 [Vigna angularis])

HSP 1 Score: 494.6 bits (1272), Expect = 1.1e-136
Identity = 237/273 (86.81%), Postives = 251/273 (91.94%), Query Frame = 1 

Query: 1   MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVC 60
           M+S+N +FDDIR+K +V DPPQ+++  DV E V+DP +   KPN  VSSSVRELLECPVC
Sbjct: 1   MASSNLFFDDIRSKVDV-DPPQNEESTDVGELVNDPGQTTLKPNGTVSSSVRELLECPVC 60

Query: 61  LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP------ 120
           LNAMYPPIHQCSNGHT+CSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP      
Sbjct: 61  LNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQEC 120

Query: 121 -FIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHF 180
             +GDIP+LVAHLKDDHKVDMHNGSTFNHRYVKSNP EVENATWMLTVFSCFGQYFCLHF
Sbjct: 121 SIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHF 180

Query: 181 EAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSF 240
           EAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKM+WQGVPRSIRDSHRKVRDSF
Sbjct: 181 EAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSF 240

Query: 241 DGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 267
           DGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ
Sbjct: 241 DGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 272

[Close]
BLAST of Cla009943 vs. NCBI nr
Match: gi|1000979551|ref|XP_015570745.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X2 [Ricinus communis])

HSP 1 Score: 483.8 bits (1244), Expect = 1.9e-133
Identity = 228/266 (85.71%), Postives = 239/266 (89.85%), Query Frame = 1 

Query: 1   MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVC 60
           M+S NP+FDD+R+KPEVIDPP  +DMMDV ESV+DPA+   KPN+ VSSSVRELLECPVC
Sbjct: 1   MASGNPFFDDLRSKPEVIDPPPSEDMMDVGESVNDPAQTAMKPNVTVSSSVRELLECPVC 60

Query: 61  LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPFIGDIP 120
           LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHEL               E   IGDIP
Sbjct: 61  LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHEL---------------ECTVIGDIP 120

Query: 121 FLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGM 180
           +LVAHLKDDHKVDMHNGSTFNHRYVKSNP EVENATWMLTVFSCFGQYFCLHFEAFQLGM
Sbjct: 121 YLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGM 180

Query: 181 APVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQR 240
           APVYIAFLRFMGDDNEAKNY+YSLEVGGNGRKM+WQGVPRSIRDSHRKVRDSFDGLIIQR
Sbjct: 181 APVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQR 240

Query: 241 NMALFFSGGDRKELKLRVTGRIWKEQ 267
           NMALFFSGGDRKELKLRVTGRIWKEQ
Sbjct: 241 NMALFFSGGDRKELKLRVTGRIWKEQ 251

[Close]
BLAST of Cla009943 vs. NCBI nr
Match: gi|672126880|ref|XP_008786899.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X2 [Phoenix dactylifera])

HSP 1 Score: 438.3 bits (1126), Expect = 9.3e-120
Identity = 205/257 (79.77%), Postives = 230/257 (89.49%), Query Frame = 1 

Query: 15  PEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVCLNAMYPPIHQCSNG 74
           PE  DP   +DMMD++E   D A++  KP+++V+SSV ELLECPVCLNAMYPPIHQCSNG
Sbjct: 6   PESSDPQNIEDMMDINEDADDYAQHLSKPSVSVASSVYELLECPVCLNAMYPPIHQCSNG 65

Query: 75  HTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPF----IGDIPFLVAHLKDDH 134
           HTLCSGCK RV N+CPTCRHELGNIRCLALEKVAASLELP      GDIP LV+HLKDDH
Sbjct: 66  HTLCSGCKSRVFNKCPTCRHELGNIRCLALEKVAASLELPCKYQSFGDIPHLVSHLKDDH 125

Query: 135 KVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRF 194
           KVDMHNGS+FNHRYV+SNP EVENATWMLTVFSCFGQYFCLHFEAFQ+ MAPVY AFLRF
Sbjct: 126 KVDMHNGSSFNHRYVRSNPDEVENATWMLTVFSCFGQYFCLHFEAFQMAMAPVYTAFLRF 185

Query: 195 MGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFS-GG 254
           MGD++EAKNYSYSLEVGGNGRK++WQGVPRSIRDSH+KVRDS+DGL++ RNMALFFS GG
Sbjct: 186 MGDESEAKNYSYSLEVGGNGRKIIWQGVPRSIRDSHKKVRDSYDGLVVHRNMALFFSGGG 245

Query: 255 DRKELKLRVTGRIWKEQ 267
           D +ELKL+VTG+IWKEQ
Sbjct: 246 DSRELKLKVTGKIWKEQ 262

[Close]
BLAST of Cla009943 vs. NCBI nr
Match: gi|848859646|ref|XP_012830697.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Erythranthe guttata])

HSP 1 Score: 430.3 bits (1105), Expect = 2.5e-117
Identity = 215/306 (70.26%), Postives = 239/306 (78.10%), Query Frame = 1 

Query: 1   MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVC 60
           M++ N YF+D+R KPE+IDPP++DD++DV E+V++ + +  KPN+A+SS+VRELLECPVC
Sbjct: 4   MANGNSYFNDLRIKPEIIDPPENDDILDVGENVNEASESALKPNVAISSNVRELLECPVC 63

Query: 61  LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP------ 120
           LNAMYPPIHQCSNGHTLCSGCKPRV NRCPTCRHELGNIRCLALEKVAASLELP      
Sbjct: 64  LNAMYPPIHQCSNGHTLCSGCKPRVQNRCPTCRHELGNIRCLALEKVAASLELPCKYQTF 123

Query: 121 -FIGDIPFLVAHLKDD----------------------------HKVDMHNGSTFN---- 180
             +G  P+  + LK +                            H  D H     +    
Sbjct: 124 GCVGIYPY-YSKLKHESQCTYRPYNCPYAGSECSVVGDIPFLVSHLKDDHKVDMHSGTTF 183

Query: 181 -HRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNY 240
            HRYVKS+P EVENATWMLTVFSCFGQYFCLHFEAFQLGMA VYIAFLRFMGDD+EAKNY
Sbjct: 184 NHRYVKSDPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMASVYIAFLRFMGDDSEAKNY 243

Query: 241 SYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTG 267
           SYSLEVGGNGRKM WQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTG
Sbjct: 244 SYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTG 303

[Close]
BLAST of Cla009943 vs. NCBI nr
Match: gi|1002280965|ref|XP_015644782.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Oryza sativa Japonica Group])

HSP 1 Score: 429.5 bits (1103), Expect = 4.3e-117
Identity = 216/300 (72.00%), Postives = 233/300 (77.67%), Query Frame = 1 

Query: 7   YFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVCLNAMYP 66
           Y DD  +  EVIDPP++++M+DV+E V D  ++  KPN  VS +VRELLECPVCLNAMYP
Sbjct: 6   YLDDAHS--EVIDPPKNEEMLDVTELVDDHTQHSPKPNAMVSGNVRELLECPVCLNAMYP 65

Query: 67  PIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP-------FIGDI 126
           PIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELP        +G  
Sbjct: 66  PIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNFGCLGIY 125

Query: 127 PFLVAHLKDDHKV---------------------------------DMHNGSTFNHRYVK 186
           P+    LK + +                                  DMHNGSTFNHRYVK
Sbjct: 126 PY-YCKLKHESQCQYRPYTCPYAGSECTVAGDIQYLVSHLKDDHKVDMHNGSTFNHRYVK 185

Query: 187 SNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEV 246
           SNP EVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDD EAKNYSYSLEV
Sbjct: 186 SNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKNYSYSLEV 245

Query: 247 GGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 267
           GG+GRKM WQGVPRSIRDSHRKVRDS+DGLIIQRNMALFFSGGD+KELKLRVTGRIWKEQ
Sbjct: 246 GGSGRKMTWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQ 302

The following BLAST results are available for this feature:
BLAST of Cla009943 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SINA1_ARATH2.0e-9363.18Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE... [more]
SINA5_ARATH2.5e-9362.76E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2[more]
SINA3_ARATH6.7e-7885.44E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1[more]
SINA4_ARATH4.4e-7784.81E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1[more]
SINA2_ARATH1.7e-7381.65E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1[more]
BLAST of Cla009943 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0L9V270_PHAAN7.6e-13786.81E3 ubiquitin-protein ligase OS=Phaseolus angularis GN=LR48_Vigan08g005200 PE=3 S... [more]
A0A0D9X2G7_9ORYZ1.6e-11872.04E3 ubiquitin-protein ligase OS=Leersia perrieri PE=3 SV=1[more]
A0A0E0LPB8_ORYPU1.8e-11771.57E3 ubiquitin-protein ligase OS=Oryza punctata PE=3 SV=1[more]
A0A022RVJ7_ERYGU1.8e-11770.26E3 ubiquitin-protein ligase OS=Erythranthe guttata GN=MIMGU_mgv1a010565mg PE=3 S... [more]
B8B5J4_ORYSI3.0e-11772.00E3 ubiquitin-protein ligase OS=Oryza sativa subsp. indica GN=OsI_27193 PE=3 SV=1[more]
BLAST of Cla009943 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|920707228|gb|KOM49225.1|1.1e-13686.81hypothetical protein LR48_Vigan08g005200 [Vigna angularis][more]
gi|1000979551|ref|XP_015570745.1|1.9e-13385.71PREDICTED: E3 ubiquitin-protein ligase SINAT3 isoform X2 [Ricinus communis][more]
gi|672126880|ref|XP_008786899.1|9.3e-12079.77PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X2 [Phoenix dactylife... [more]
gi|848859646|ref|XP_012830697.1|2.5e-11770.26PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Erythranthe guttata][more]
gi|1002280965|ref|XP_015644782.1|4.3e-11772.00PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Oryza sativa Japonica Group][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR004162SINA-like
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
IPR0181217-in-absentia-prot_TRAF-dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0007275multicellular organism development
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006915 apoptotic process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0042787 protein ubiquitination involved in ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0046872 metal ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU56756watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009943Cla009943.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU56756WMU56756transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 57..93
score: 9
IPR004162E3 ubiquitin-protein ligase SIN-likePANTHERPTHR10315SEVEN IN ABSENTIA HOMOLOGcoord: 1..266
score: 1.8E
IPR008974TRAF-likeGENE3DG3DSA:2.60.210.10coord: 137..263
score: 6.0
IPR008974TRAF-likeunknownSSF49599TRAF domain-likecoord: 114..263
score: 1.31
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 41..112
score: 2.7
IPR018121Seven-in-absentia protein, TRAF-like domainPFAMPF03145Sinacoord: 116..259
score: 2.4
NoneNo IPR availablePANTHERPTHR10315:SF29SUBFAMILY NOT NAMEDcoord: 1..266
score: 1.8E
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 49..96
score: 1.8