Cla009311 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009311
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Calcium-dependent lipid-binding domain-containing protein (AHRD V1 **** O23425_ARATH); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting
Location	Chr6 : 5600927 .. 5601193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGGAAATAATTATAGCTTCAGCCACATGCCTTACTACAATTGGCCATACTCCCAACATGAAAATATACGTCGTCGTTTCAATCACCGGCGCCACCGTCAACCAGCAGATCAAGGCTCAGACTGACGTGGACCGACACGGCGGCAGAAATCCTACGTGGAACTTTCCGGTGAAATTTGACGCGGACGATTTAAAACAGGATGTCAAAGCTCGTCTTGTTTCGCTCTTAAGTGCGAGGATGGGAAGGGAAATAAAGATTTAG

mRNA sequence

ATGGCTTTGGAAATAATTATAGCTTCAGCCACATGCCTTACTACAATTGGCCATACTCCCAACATGAAAATATACGTCGTCGTTTCAATCACCGGCGCCACCGTCAACCAGCAGATCAAGGCTCAGACTGACGTGGACCGACACGGCGGCAGAAATCCTACGTGGAACTTTCCGGTGAAATTTGACGCGGACGATTTAAAACAGGATGTCAAAGCTCGTCTTGTTTCGCTCTTAAGTGCGAGGATGGGAAGGGAAATAAAGATTTAG

Coding sequence (CDS)

ATGGCTTTGGAAATAATTATAGCTTCAGCCACATGCCTTACTACAATTGGCCATACTCCCAACATGAAAATATACGTCGTCGTTTCAATCACCGGCGCCACCGTCAACCAGCAGATCAAGGCTCAGACTGACGTGGACCGACACGGCGGCAGAAATCCTACGTGGAACTTTCCGGTGAAATTTGACGCGGACGATTTAAAACAGGATGTCAAAGCTCGTCTTGTTTCGCTCTTAAGTGCGAGGATGGGAAGGGAAATAAAGATTTAG

Protein sequence

MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVKFDADDLKQDVKARLVSLLSARMGREIKI

Homology

[Close]

BLAST of Cla009311 vs. TrEMBL
Match: A0A0A0KEB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194680 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-07
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1  MALEIIIASATCLTTIGH--TPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFP 60
          M+LE+ + SA  L       +  MK+YVVVS+T    ++Q +AQT+VD  GG NP WNFP
Sbjct: 4  MSLEMCVESAEDLKKFDDDLSSKMKVYVVVSVTSGVFSEQ-RAQTNVDMEGGENPRWNFP 63

Query: 61 VKF--DADDLKQDVKARL 75
          +KF  D +  KQD+K+ L
Sbjct: 64 MKFLIDLNAAKQDLKSLL 80

[Close]

BLAST of Cla009311 vs. TrEMBL
Match: B9HSC2_POPTR (Shock protein SRC2 OS=Populus trichocarpa GN=POPTR_0010s02500g PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-07
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIK--AQTDVDRHGGRNPTWNFPVK 62
          LEI + SA  L  + +   M +Y VVSI+G    QQ K   +T VDR GG+NPTWNFP+K
Sbjct: 6  LEINVISARDLKDVNYISKMDVYAVVSISGVDSKQQPKQKTKTPVDRDGGKNPTWNFPIK 65

[Close]

BLAST of Cla009311 vs. TrEMBL
Match: V4LYY3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026991mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.3e-07
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          + LE+ I SA+ L  +     M +Y V++I G    ++ K +TDVD  GG NPTWN  VK
Sbjct: 4  LTLELNINSASNLANVNLISKMDVYAVIAINGDDTQEKQKVKTDVDHSGGSNPTWNHAVK 63

Query: 61 FDADD-LKQDVKARLVSLLSAR 82
          F  ++ L +D ++ LV  L +R
Sbjct: 64 FTVNEGLARDGRSTLVMRLISR 85

[Close]

BLAST of Cla009311 vs. TrEMBL
Match: F6HE67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01400 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVKFD 62
          LEI + SA  L  +     M +YVVVSI G   + + K +T VDR GG NPTWNFP+KF 
Sbjct: 6  LEINVISAKDLKDVNLISKMDVYVVVSING---DSRSKQKTPVDRDGGTNPTWNFPMKFT 65

Query: 63 ADD 66
           D+
Sbjct: 66 VDE 65

[Close]

BLAST of Cla009311 vs. TrEMBL
Match: B9N523_POPTR (Shock protein SRC2 OS=Populus trichocarpa GN=POPTR_0034s00240g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIK--AQTDVDRHGGRNPTWNFPVK 62
          LEI + SA  L  + +   M +Y VVSI+G    Q+ K   +T VDR GG+NPTWNFP+K
Sbjct: 6  LEINVISARGLKDVNYISKMDVYAVVSISGDDSKQKPKQKTKTPVDRAGGKNPTWNFPIK 65

[Close]

BLAST of Cla009311 vs. NCBI nr
Match: gi|659117176|ref|XP_008458461.1| (PREDICTED: SH3 domain-containing protein C23A1.17-like [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 7.8e-23
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          MALEI+IASA CL  I  TPNM++YVVVSITG  VN+QIKAQTDVD+HGG NPTWNF +K
Sbjct: 1  MALEIVIASARCLARINPTPNMRLYVVVSITGTAVNEQIKAQTDVDQHGGGNPTWNFSMK 60

Query: 61 FDADDLKQDVKARLVSLL 79
          FD + LKQD KA +V  L
Sbjct: 61 FDVEGLKQDFKAGIVFAL 78

[Close]

BLAST of Cla009311 vs. NCBI nr
Match: gi|700191980|gb|KGN47184.1| (hypothetical protein Csa_6G194680 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1  MALEIIIASATCLTTIGH--TPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFP 60
          M+LE+ + SA  L       +  MK+YVVVS+T    ++Q +AQT+VD  GG NP WNFP
Sbjct: 4  MSLEMCVESAEDLKKFDDDLSSKMKVYVVVSVTSGVFSEQ-RAQTNVDMEGGENPRWNFP 63

Query: 61 VKF--DADDLKQDVKARL 75
          +KF  D +  KQD+K+ L
Sbjct: 64 MKFLIDLNAAKQDLKSLL 80

[Close]

BLAST of Cla009311 vs. NCBI nr
Match: gi|224110568|ref|XP_002315561.1| (shock protein SRC2 [Populus trichocarpa])

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-07
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIK--AQTDVDRHGGRNPTWNFPVK 62
          LEI + SA  L  + +   M +Y VVSI+G    QQ K   +T VDR GG+NPTWNFP+K
Sbjct: 6  LEINVISARDLKDVNYISKMDVYAVVSISGVDSKQQPKQKTKTPVDRDGGKNPTWNFPIK 65

[Close]

BLAST of Cla009311 vs. NCBI nr
Match: gi|743902368|ref|XP_011044520.1| (PREDICTED: actin cytoskeleton-regulatory complex protein pan-1-like [Populus euphratica])

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-07
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIK--AQTDVDRHGGRNPTWNFPVK 62
          LEI + SA  L  + +   M +Y VVSI+G    QQ K   +T VDR GG+NPTWNFP+K
Sbjct: 6  LEINVISARDLKDVNYISKMDVYAVVSISGVDSKQQPKQKTKTPVDRAGGKNPTWNFPIK 65

[Close]

BLAST of Cla009311 vs. NCBI nr
Match: gi|697167288|ref|XP_009592495.1| (PREDICTED: cytokinesis protein sepA [Nicotiana tomentosiformis])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 30/63 (47.62%), Postives = 36/63 (57.14%), Query Frame = 1


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVKFD 62
          LEI + S   L  +     M +YVVVSI+GA      K +T VD  G  NPTWNFP+KF 
Sbjct: 6  LEINVMSGKDLNKVNLITKMDVYVVVSISGADDRSDQKTKTHVDHDGDNNPTWNFPIKFT 65

Query: 63 ADD 66
           DD
Sbjct: 66 IDD 68

The following BLAST results are available for this feature:

BLAST of Cla009311 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEB7_CUCSA	1.1e-07	46.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194680 PE=4 SV=1	[more]
B9HSC2_POPTR	4.2e-07	50.82	Shock protein SRC2 OS=Populus trichocarpa GN=POPTR_0010s02500g PE=4 SV=1	[more]
V4LYY3_EUTSA	9.3e-07	39.02	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026991mg PE=4 SV=1	[more]
F6HE67_VITVI	2.1e-06	49.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01400 PE=4 SV=...	[more]
B9N523_POPTR	2.7e-06	49.18	Shock protein SRC2 OS=Populus trichocarpa GN=POPTR_0034s00240g PE=4 SV=1	[more]

BLAST of Cla009311 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117176\|ref\|XP_008458461.1\|	7.8e-23	70.51	PREDICTED: SH3 domain-containing protein C23A1.17-like [Cucumis melo]	[more]
gi\|700191980\|gb\|KGN47184.1\|	1.6e-07	46.15	hypothetical protein Csa_6G194680 [Cucumis sativus]	[more]
gi\|224110568\|ref\|XP_002315561.1\|	6.0e-07	50.82	shock protein SRC2 [Populus trichocarpa]	[more]
gi\|743902368\|ref\|XP_011044520.1\|	7.8e-07	50.82	PREDICTED: actin cytoskeleton-regulatory complex protein pan-1-like [Populus eup...	[more]
gi\|697167288\|ref\|XP_009592495.1\|	1.0e-06	47.62	PREDICTED: cytokinesis protein sepA [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009311	Cla009311.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000008	C2 domain	GENE3D	G3DSA:2.60.40.150		coord: 3..68 score: 1.
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 3..68 score: 1.
IPR000008	C2 domain	unknown	SSF49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 2..64 score: 3.2
None	No IPR available	PANTHER	PTHR32246	FAMILY NOT NAMED	coord: 1..65 score: 2.4
None	No IPR available	PANTHER	PTHR32246:SF18	C2 DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..65 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009311	Cla97C06G114700	Watermelon (97103) v2	wmwmbB406
Cla009311	CSPI06G14780	Wild cucumber (PI 183967)	cpiwmB560
Cla009311	Cucsa.172210	Cucumber (Gy14) v1	cgywmB329
Cla009311	Lsi09G014210	Bottle gourd (USVL1VR-Ls)	lsiwmB040
Cla009311	Cp4.1LG17g00870	Cucurbita pepo (Zucchini)	cpewmB340
Cla009311	CsGy6G014640	Cucumber (Gy14) v2	cgybwmB506
Cla009311	CsaV3_6G017230	Cucumber (Chinese Long) v3	cucwmB566

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009311	Cucumber (Gy14) v1	cgywmB483
Cla009311	Cucurbita maxima (Rimu)	cmawmB250
Cla009311	Cucurbita maxima (Rimu)	cmawmB357
Cla009311	Cucurbita maxima (Rimu)	cmawmB358
Cla009311	Cucurbita maxima (Rimu)	cmawmB811
Cla009311	Cucurbita maxima (Rimu)	cmawmB878
Cla009311	Cucurbita moschata (Rifu)	cmowmB239
Cla009311	Cucurbita moschata (Rifu)	cmowmB353
Cla009311	Cucurbita moschata (Rifu)	cmowmB802
Cla009311	Cucurbita moschata (Rifu)	cmowmB867
Cla009311	Melon (DHL92) v3.5.1	mewmB141
Cla009311	Melon (DHL92) v3.5.1	mewmB486
Cla009311	Watermelon (Charleston Gray)	wcgwmB311
Cla009311	Watermelon (Charleston Gray)	wcgwmB344
Cla009311	Cucumber (Chinese Long) v2	cuwmB279
Cla009311	Cucumber (Chinese Long) v2	cuwmB541
Cla009311	Cucumber (Chinese Long) v2	cuwmB550
Cla009311	Cucurbita pepo (Zucchini)	cpewmB160
Cla009311	Cucurbita pepo (Zucchini)	cpewmB161
Cla009311	Cucurbita pepo (Zucchini)	cpewmB623
Cla009311	Cucurbita pepo (Zucchini)	cpewmB853
Cla009311	Bottle gourd (USVL1VR-Ls)	lsiwmB226
Cla009311	Bottle gourd (USVL1VR-Ls)	lsiwmB384
Cla009311	Cucumber (Gy14) v2	cgybwmB262
Cla009311	Cucumber (Gy14) v2	cgybwmB576
Cla009311	Melon (DHL92) v3.6.1	medwmB139
Cla009311	Melon (DHL92) v3.6.1	medwmB474
Cla009311	Silver-seed gourd	carwmB0073
Cla009311	Silver-seed gourd	carwmB0604
Cla009311	Silver-seed gourd	carwmB0701
Cla009311	Silver-seed gourd	carwmB0835
Cla009311	Cucumber (Chinese Long) v3	cucwmB288
Cla009311	Cucumber (Chinese Long) v3	cucwmB376
Cla009311	Watermelon (97103) v2	wmwmbB402
Cla009311	Watermelon (97103) v2	wmwmbB419
Cla009311	Wax gourd	wgowmB095
Cla009311	Wax gourd	wgowmB238
Cla009311	Watermelon (97103) v1	wmwmB037
Cla009311	Watermelon (97103) v1	wmwmB138