Cla97C06G114700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G114700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein SRC2-like
Location	Cla97Chr06 : 5600994 .. 5601260 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGGAAATAATTATAGCTTCAGCCACATGCCTTACTACAATTGGCCATACTCCCAACATGAAAATATACGTCGTCGTTTCAATCACCGGCGCCACCGTCAACCAGCAGATCAAGGCTCAGACTGACGTGGACCGACACGGCGGCAGAAATCCTACGTGGAACTTTCCGGTGAAATTTGACGCGGACGATTTAAAACAGGATGTCAAAGCTCGTCTTGTTTCGCTCTTAAGTGCGAGGATGGGAAGGGAAATAAAGATTTAG

mRNA sequence

ATGGCTTTGGAAATAATTATAGCTTCAGCCACATGCCTTACTACAATTGGCCATACTCCCAACATGAAAATATACGTCGTCGTTTCAATCACCGGCGCCACCGTCAACCAGCAGATCAAGGCTCAGACTGACGTGGACCGACACGGCGGCAGAAATCCTACGTGGAACTTTCCGGTGAAATTTGACGCGGACGATTTAAAACAGGATGTCAAAGCTCGTCTTGTTTCGCTCTTAAGTGCGAGGATGGGAAGGGAAATAAAGATTTAG

Coding sequence (CDS)

ATGGCTTTGGAAATAATTATAGCTTCAGCCACATGCCTTACTACAATTGGCCATACTCCCAACATGAAAATATACGTCGTCGTTTCAATCACCGGCGCCACCGTCAACCAGCAGATCAAGGCTCAGACTGACGTGGACCGACACGGCGGCAGAAATCCTACGTGGAACTTTCCGGTGAAATTTGACGCGGACGATTTAAAACAGGATGTCAAAGCTCGTCTTGTTTCGCTCTTAAGTGCGAGGATGGGAAGGGAAATAAAGATTTAG

Protein sequence

MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVKFDADDLKQDVKARLVSLLSARMGREIKI

Homology

[Close]

BLAST of Cla97C06G114700 vs. NCBI nr
Match: XP_008458461.1 (PREDICTED: protein SRC2-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          MALEI+IASA CL  I  TPNM++YVVVSITG  VN+QIKAQTDVD+HGG NPTWNF +K
Sbjct: 1  MALEIVIASARCLARINPTPNMRLYVVVSITGTAVNEQIKAQTDVDQHGGGNPTWNFSMK 60

Query: 61 FDADDLKQDVKARLVSLL 79
          FD + LKQD KA +V  L
Sbjct: 61 FDVEGLKQDFKAGIVFAL 78

[Close]

BLAST of Cla97C06G114700 vs. NCBI nr
Match: XP_022930477.1 (protein SRC2-like [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          M L+I I SAT LT +      K+YVVVS  GA VNQQ +A+T+VD+ GG NPTWNF VK
Sbjct: 8  MCLDINIVSATGLTGVDPASKPKLYVVVSFVGAAVNQQ-RARTNVDKDGGGNPTWNFAVK 67

Query: 61 F--DADDLKQDVKARLVSLLSARMGR 85
          F  D + +KQ ++  LV  L    GR
Sbjct: 68 FAVDVEGVKQGIETSLVFALKYEDGR 92

[Close]

BLAST of Cla97C06G114700 vs. NCBI nr
Match: XP_023000192.1 (protein SRC2-like [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          M L+I I SA  LT +      K+YVVVSI GA VNQQ +A+T+VD+ GG NPTWNF VK
Sbjct: 8  MCLDINIVSARGLTGVDPASKPKLYVVVSIIGAAVNQQ-RARTNVDKDGGGNPTWNFAVK 67

Query: 61 F--DADDLKQDVKARLVSLLSARMGR 85
          F  D + +KQ  +  LV  L    GR
Sbjct: 68 FAVDVEGVKQGRETSLVFALKYEDGR 92

[Close]

BLAST of Cla97C06G114700 vs. NCBI nr
Match: XP_023514438.1 (protein SRC2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          M L+I I SA  LT +      K+YVVVS  GA VNQQ +A+T+VD+ GG NPTWNF VK
Sbjct: 8  MCLDINIVSARGLTGVDPASKPKLYVVVSFFGAAVNQQ-RARTNVDKDGGGNPTWNFAVK 67

Query: 61 F--DADDLKQDVKARLVSLLSARMGR 85
          F  D + +KQ ++  LV  L    GR
Sbjct: 68 FAVDVEAVKQGIEGSLVFALKYEDGR 92

[Close]

BLAST of Cla97C06G114700 vs. NCBI nr
Match: XP_023514436.1 (protein SRC2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          M L+I I SA  LT +      K+YVVVS  GA VNQQ +A+T+VD+ GG NPTWNF VK
Sbjct: 1  MCLDINIVSARGLTGVDPASKPKLYVVVSFFGAAVNQQ-RARTNVDKDGGGNPTWNFAVK 60

Query: 61 F--DADDLKQDVKARLVSLLSARMGR 85
          F  D + +KQ ++  LV  L    GR
Sbjct: 61 FAVDVEAVKQGIEGSLVFALKYEDGR 85

[Close]

BLAST of Cla97C06G114700 vs. TrEMBL
Match: tr|A0A1S3C7E6|A0A1S3C7E6_CUCME (protein SRC2-like OS=Cucumis melo OX=3656 GN=LOC103497863 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.0e-22
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          MALEI+IASA CL  I  TPNM++YVVVSITG  VN+QIKAQTDVD+HGG NPTWNF +K
Sbjct: 1  MALEIVIASARCLARINPTPNMRLYVVVSITGTAVNEQIKAQTDVDQHGGGNPTWNFSMK 60

Query: 61 FDADDLKQDVKARLVSLL 79
          FD + LKQD KA +V  L
Sbjct: 61 FDVEGLKQDFKAGIVFAL 78

[Close]

BLAST of Cla97C06G114700 vs. TrEMBL
Match: tr|A0A2N9IAP9|A0A2N9IAP9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49360 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-07
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVKFD 62
          LE+ IASA  L  +     M +YVVVS+TG + N + KA+T+V R GG NP+WNFP+KF+
Sbjct: 6  LELNIASAKDLKDVNLISKMDVYVVVSLTGDSHNHKQKAKTNVSRDGGTNPSWNFPMKFN 65

Query: 63 ADD 66
           ++
Sbjct: 66 IEE 68

[Close]

BLAST of Cla97C06G114700 vs. TrEMBL
Match: tr|A0A0A0KEB7|A0A0A0KEB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194680 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1  MALEIIIASATCLTTIGH--TPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFP 60
          M+LE+ + SA  L       +  MK+YVVVS+T    ++Q +AQT+VD  GG NP WNFP
Sbjct: 4  MSLEMCVESAEDLKKFDDDLSSKMKVYVVVSVTSGVFSEQ-RAQTNVDMEGGENPRWNFP 63

Query: 61 VKF--DADDLKQDVKARL 75
          +KF  D +  KQD+K+ L
Sbjct: 64 MKFLIDLNAAKQDLKSLL 80

[Close]

BLAST of Cla97C06G114700 vs. TrEMBL
Match: tr|A0A2P5ES55|A0A2P5ES55_9ROSA (C2 domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_158920 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 2  ALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVKF 61
          +LEI + SA  L  +     M +Y VVSI+G + N Q K +T+VDR  GRNPTWNFP KF
Sbjct: 5  SLEINVISARDLKDVNLMTKMDVYAVVSISGESHNHQ-KTKTNVDRASGRNPTWNFPAKF 64

Query: 62 DADD 66
            D+
Sbjct: 65 TVDE 67

[Close]

BLAST of Cla97C06G114700 vs. TrEMBL
Match: tr|B9HSC2|B9HSC2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G024200v3 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQ--IKAQTDVDRHGGRNPTWNFPVK 62
          LEI + SA  L  + +   M +Y VVSI+G    QQ   K +T VDR GG+NPTWNFP+K
Sbjct: 6  LEINVISARDLKDVNYISKMDVYAVVSISGVDSKQQPKQKTKTPVDRDGGKNPTWNFPIK 65

[Close]

BLAST of Cla97C06G114700 vs. Swiss-Prot
Match: sp|O04133|SRC2_SOYBN (Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 3  LEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVKFD 62
          LE+ I SA  +  +     M +Y  VS++G  ++ Q  A T V +  G NPTWN+PVKF 
Sbjct: 8  LELNIISAKDIKNVNLFSKMDVYAAVSLSGDPLHPQ-GATTHVHKDAGSNPTWNYPVKFS 67

Query: 63 ADD--LKQDVKARLVSLLSAR 82
           ++   K++  +  + L+S R
Sbjct: 68 VNESLAKENRLSLEIKLISDR 87

[Close]

BLAST of Cla97C06G114700 vs. TAIR10
Match: AT4G15755.1 (Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-08
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 1  MALEIIIASATCLTTIGHTPNMKIYVVVSITGATVNQQIKAQTDVDRHGGRNPTWNFPVK 60
          + LE+ I SA  L  +     M ++  ++I G    ++ KA+T VDR+GG NPTWN  +K
Sbjct: 4  LTLELNINSARNLLNVNLITKMNVFTAITINGENTRKKQKAKTTVDRYGGSNPTWNQTIK 63

Query: 61 FDADD 66
          F  D+
Sbjct: 64 FSVDE 68

The following BLAST results are available for this feature:

BLAST of Cla97C06G114700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458461.1	7.5e-22	70.51	PREDICTED: protein SRC2-like [Cucumis melo]	[more]
XP_022930477.1	1.3e-10	51.16	protein SRC2-like [Cucurbita moschata]	[more]
XP_023000192.1	1.5e-09	51.16	protein SRC2-like [Cucurbita maxima]	[more]
XP_023514438.1	1.5e-09	50.00	protein SRC2-like [Cucurbita pepo subsp. pepo]	[more]
XP_023514436.1	1.5e-09	50.00	protein SRC2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C06G114700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C7E6\|A0A1S3C7E6_CUCME	5.0e-22	70.51	protein SRC2-like OS=Cucumis melo OX=3656 GN=LOC103497863 PE=4 SV=1	[more]
tr\|A0A2N9IAP9\|A0A2N9IAP9_FAGSY	3.5e-07	49.21	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49360 PE=4 SV=1	[more]
tr\|A0A0A0KEB7\|A0A0A0KEB7_CUCSA	1.0e-06	46.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194680 PE=4 SV=1	[more]
tr\|A0A2P5ES55\|A0A2P5ES55_9ROSA	2.2e-06	50.00	C2 domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_158920 P...	[more]
tr\|B9HSC2\|B9HSC2_POPTR	3.8e-06	50.82	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G024200v3 PE=...	[more]

BLAST of Cla97C06G114700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04133\|SRC2_SOYBN	2.8e-04	34.57	Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1	[more]

BLAST of Cla97C06G114700 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15755.1	5.8e-08	38.46	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom
IPR035892	C2_domain_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G114700.1	Cla97C06G114700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035892	C2 domain superfamily	GENE3D	G3DSA:2.60.40.150		coord: 1..77 e-value: 4.7E-6 score: 28.4
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 3..68 e-value: 1.4E-5 score: 25.2
None	No IPR available	PANTHER	PTHR32246	FAMILY NOT NAMED	coord: 2..74
None	No IPR available	PANTHER	PTHR32246:SF18	C2 DOMAIN-CONTAINING PROTEIN-RELATED	coord: 2..74
None	No IPR available	SUPERFAMILY	SSF49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 2..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G114700	Cla009311	Watermelon (97103) v1	wmwmbB406
Cla97C06G114700	Lsi09G014210	Bottle gourd (USVL1VR-Ls)	lsiwmbB026

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G114700	Wax gourd	wgowmbB088
Cla97C06G114700	Wax gourd	wgowmbB203
Cla97C06G114700	Watermelon (97103) v2	wmbwmbB137
Cla97C06G114700	Watermelon (97103) v2	wmbwmbB162
Cla97C06G114700	Silver-seed gourd	carwmbB0070
Cla97C06G114700	Silver-seed gourd	carwmbB0114
Cla97C06G114700	Silver-seed gourd	carwmbB0632
Cla97C06G114700	Silver-seed gourd	carwmbB0735
Cla97C06G114700	Silver-seed gourd	carwmbB0868
Cla97C06G114700	Cucumber (Gy14) v2	cgybwmbB222
Cla97C06G114700	Cucumber (Gy14) v2	cgybwmbB448
Cla97C06G114700	Cucumber (Gy14) v1	cgywmbB312
Cla97C06G114700	Cucumber (Gy14) v1	cgywmbB453
Cla97C06G114700	Cucurbita maxima (Rimu)	cmawmbB266
Cla97C06G114700	Cucurbita maxima (Rimu)	cmawmbB270
Cla97C06G114700	Cucurbita maxima (Rimu)	cmawmbB374
Cla97C06G114700	Cucurbita maxima (Rimu)	cmawmbB377
Cla97C06G114700	Cucurbita maxima (Rimu)	cmawmbB865
Cla97C06G114700	Cucurbita maxima (Rimu)	cmawmbB921
Cla97C06G114700	Cucurbita moschata (Rifu)	cmowmbB246
Cla97C06G114700	Cucurbita moschata (Rifu)	cmowmbB359
Cla97C06G114700	Cucurbita moschata (Rifu)	cmowmbB361
Cla97C06G114700	Cucurbita moschata (Rifu)	cmowmbB837
Cla97C06G114700	Cucurbita moschata (Rifu)	cmowmbB896
Cla97C06G114700	Wild cucumber (PI 183967)	cpiwmbB239
Cla97C06G114700	Wild cucumber (PI 183967)	cpiwmbB497
Cla97C06G114700	Cucumber (Chinese Long) v3	cucwmbB233
Cla97C06G114700	Cucumber (Chinese Long) v3	cucwmbB489
Cla97C06G114700	Cucumber (Chinese Long) v2	cuwmbB231
Cla97C06G114700	Cucumber (Chinese Long) v2	cuwmbB470
Cla97C06G114700	Cucumber (Chinese Long) v2	cuwmbB478
Cla97C06G114700	Bottle gourd (USVL1VR-Ls)	lsiwmbB198
Cla97C06G114700	Bottle gourd (USVL1VR-Ls)	lsiwmbB344
Cla97C06G114700	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G114700	Melon (DHL92) v3.6.1	medwmbB442
Cla97C06G114700	Melon (DHL92) v3.5.1	mewmbB128
Cla97C06G114700	Melon (DHL92) v3.5.1	mewmbB448
Cla97C06G114700	Watermelon (Charleston Gray)	wcgwmbB026
Cla97C06G114700	Watermelon (Charleston Gray)	wcgwmbB238
Cla97C06G114700	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G114700	Watermelon (97103) v1	wmwmbB030
Cla97C06G114700	Watermelon (97103) v1	wmwmbB217