Cla009179 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009179
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cyclin family protein (AHRD V1 ***- D7MKU7_ARALL); contains Interpro domain(s) IPR015429 Transcription regulator cyclin
Location	Chr1 : 23912876 .. 23913106 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGACTTCTGCCATTTGAGTCTACACATCATAGAATATCTGATGGTGGGTCCTCAAAGAGTTCTCAAGAAAAGCAAGATGAAGCAGGTCGTTGGTATATGTCCAGAAAGGAAATTGAAGAAAATTCCCCATCAAGAAGAGATGGTATTGACTTGAAGAAGGAGACTTATTTACGGAAGTCATACTGCACATTTTTGCAAGATCTGGGCATGAGGCTCAAAGTGTAA

mRNA sequence

ATGTCTGGACTTCTGCCATTTGAGTCTACACATCATAGAATATCTGATGGTGGGTCCTCAAAGAGTTCTCAAGAAAAGCAAGATGAAGCAGGTCGTTGGTATATGTCCAGAAAGGAAATTGAAGAAAATTCCCCATCAAGAAGAGATGGTATTGACTTGAAGAAGGAGACTTATTTACGGAAGTCATACTGCACATTTTTGCAAGATCTGGGCATGAGGCTCAAAGTGTAA

Coding sequence (CDS)

ATGTCTGGACTTCTGCCATTTGAGTCTACACATCATAGAATATCTGATGGTGGGTCCTCAAAGAGTTCTCAAGAAAAGCAAGATGAAGCAGGTCGTTGGTATATGTCCAGAAAGGAAATTGAAGAAAATTCCCCATCAAGAAGAGATGGTATTGACTTGAAGAAGGAGACTTATTTACGGAAGTCATACTGCACATTTTTGCAAGATCTGGGCATGAGGCTCAAAGTGTAA

Protein sequence

MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKV

Homology

[Close]

BLAST of Cla009179 vs. Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-23
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          M+G+L  E ++        S++S EKQ+E  RWY  RKEIEENSPSR DGIDLKKETYLR
Sbjct: 1  MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-22
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 4  LLPFESTHHRISDGGSSKSSQEKQDEAGR----WYMSRKEIEENSPSRRDGIDLKKETYL 63
          ++P +S+HH I +    +++Q + +E G     WY SRKEIEENSPSRRDGIDLKKE+YL
Sbjct: 3  MMPSDSSHHGIVENSPYRTTQGRNEETGELGASWYFSRKEIEENSPSRRDGIDLKKESYL 62

Query: 64 RKSYCTFLQDLGMRLKV 77
          RKSYCTFLQDLGMRLKV
Sbjct: 63 RKSYCTFLQDLGMRLKV 79

[Close]

BLAST of Cla009179 vs. Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.4e-22
Identity = 51/76 (67.11%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          M+G+L  + +         S++S EKQDE  RWY  RKEIEENSPSR D IDLKKETYLR
Sbjct: 1  MAGVLAGDCSFGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-20
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGR----WYMSRKEIEENSPSRRDGIDLKKE 60
          M G+   +S+HH I +    ++  ++  E G+    WY SRKEIEENS SRRDGIDLKKE
Sbjct: 1  MDGIQTSDSSHHGIVENSPYRTPYDRYAEGGQLGASWYFSRKEIEENSLSRRDGIDLKKE 60

Query: 61 TYLRKSYCTFLQDLGMRLKV 77
          +YLRKSYCTFLQDLGMRLKV
Sbjct: 61 SYLRKSYCTFLQDLGMRLKV 80

[Close]

BLAST of Cla009179 vs. Swiss-Prot
Match: CCT12_ARATH (Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 39/58 (67.24%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 19 SSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKV 77
          SS +S    DE   W+ SR+EIE NSPSRRDGIDLK ET LR SYCTFL+ LG RLKV
Sbjct: 17 SSVASNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKV 74

[Close]

BLAST of Cla009179 vs. TrEMBL
Match: A0A0A0M1B5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714690 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          MSGLLPFESTHHRISD GSSK+SQE QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1  MSGLLPFESTHHRISDSGSSKNSQENQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. TrEMBL
Match: A0A0D2VID7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G051300 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-28
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          M+G+LP +S+HH  SD G S++SQEKQ+E GRWY SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1  MAGMLPGDSSHHSTSDTGPSRNSQEKQEEVGRWYFSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. TrEMBL
Match: A0A061GC57_THECC (Cyclin family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_029312 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-28
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          M+G+LP +S+HH  S+ G S++SQEKQ+E GRWY SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1  MAGMLPGDSSHHSTSESGPSRNSQEKQEEVGRWYFSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. TrEMBL
Match: A0A0B2S8F2_GLYSO (Cyclin-T1-5 OS=Glycine soja GN=glysoja_007496 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-26
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEA-GRWYMSRKEIEENSPSRRDGIDLKKETYL 60
          M+GL+P E +HH  SDG S KSS EKQ+E+ GRWYMSRKEIEE+SPSR+DGIDLKKETYL
Sbjct: 1  MAGLMPGELSHHGTSDGNSGKSSIEKQEESLGRWYMSRKEIEEHSPSRKDGIDLKKETYL 60

Query: 61 RKSYCTFLQDLGMRLKV 77
          RKSYCTFLQDLGMRLKV
Sbjct: 61 RKSYCTFLQDLGMRLKV 77

[Close]

BLAST of Cla009179 vs. TrEMBL
Match: K7L395_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G223700 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-26
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEA-GRWYMSRKEIEENSPSRRDGIDLKKETYL 60
          M+GL+P E +HH  SDG S KSS EKQ+E+ GRWYMSRKEIEE+SPSR+DGIDLKKETYL
Sbjct: 1  MAGLMPGELSHHGTSDGNSGKSSIEKQEESLGRWYMSRKEIEEHSPSRKDGIDLKKETYL 60

Query: 61 RKSYCTFLQDLGMRLKV 77
          RKSYCTFLQDLGMRLKV
Sbjct: 61 RKSYCTFLQDLGMRLKV 77

[Close]

BLAST of Cla009179 vs. NCBI nr
Match: gi|659118350|ref|XP_008459075.1| (PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-5 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          MSGLLPFESTHHRIS+ GSSK+SQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1  MSGLLPFESTHHRISESGSSKNSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. NCBI nr
Match: gi|778664653|ref|XP_011660325.1| (PREDICTED: cyclin-T1-3 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          MSGLLPFESTHHRISD GSSK+SQE QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1  MSGLLPFESTHHRISDSGSSKNSQENQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. NCBI nr
Match: gi|823245164|ref|XP_012455251.1| (PREDICTED: cyclin-T1-4 [Gossypium raimondii])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-28
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          M+G+LP +S+HH  SD G S++SQEKQ+E GRWY SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1  MAGMLPGDSSHHSTSDTGPSRNSQEKQEEVGRWYFSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. NCBI nr
Match: gi|590621708|ref|XP_007024847.1| (Cyclin family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 132.1 bits (331), Expect = 4.1e-28
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLR 60
          M+G+LP +S+HH  S+ G S++SQEKQ+E GRWY SRKEIEENSPSRRDGIDLKKETYLR
Sbjct: 1  MAGMLPGDSSHHSTSESGPSRNSQEKQEEVGRWYFSRKEIEENSPSRRDGIDLKKETYLR 60

Query: 61 KSYCTFLQDLGMRLKV 77
          KSYCTFLQDLGMRLKV
Sbjct: 61 KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Cla009179 vs. NCBI nr
Match: gi|356521602|ref|XP_003529443.1| (PREDICTED: cyclin-T1-3-like isoform X1 [Glycine max])

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-26
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MSGLLPFESTHHRISDGGSSKSSQEKQDEA-GRWYMSRKEIEENSPSRRDGIDLKKETYL 60
          M+GL+P E +HH  SDG S KSS EKQ+E+ GRWYMSRKEIEE+SPSR+DGIDLKKETYL
Sbjct: 1  MAGLMPGELSHHGTSDGNSGKSSIEKQEESLGRWYMSRKEIEEHSPSRKDGIDLKKETYL 60

Query: 61 RKSYCTFLQDLGMRLKV 77
          RKSYCTFLQDLGMRLKV
Sbjct: 61 RKSYCTFLQDLGMRLKV 77

The following BLAST results are available for this feature:

BLAST of Cla009179 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCT15_ARATH	5.2e-23	68.42	Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2	[more]
CCT14_ORYSJ	2.6e-22	64.94	Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1	[more]
CCT14_ARATH	7.4e-22	67.11	Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1	[more]
CCT13_ORYSJ	4.1e-20	61.25	Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2	[more]
CCT12_ARATH	1.7e-13	67.24	Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2	[more]

BLAST of Cla009179 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B5_CUCSA	2.7e-34	96.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714690 PE=3 SV=1	[more]
A0A0D2VID7_GOSRA	1.7e-28	81.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G051300 PE=3 SV=1	[more]
A0A061GC57_THECC	2.8e-28	80.26	Cyclin family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_029312 PE=3 ...	[more]
A0A0B2S8F2_GLYSO	1.6e-26	80.52	Cyclin-T1-5 OS=Glycine soja GN=glysoja_007496 PE=3 SV=1	[more]
K7L395_SOYBN	1.6e-26	80.52	Uncharacterized protein OS=Glycine max GN=GLYMA_07G223700 PE=3 SV=1	[more]

BLAST of Cla009179 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118350\|ref\|XP_008459075.1\|	2.9e-34	96.05	PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-5 [Cucumis melo]	[more]
gi\|778664653\|ref\|XP_011660325.1\|	3.8e-34	96.05	PREDICTED: cyclin-T1-3 [Cucumis sativus]	[more]
gi\|823245164\|ref\|XP_012455251.1\|	2.4e-28	81.58	PREDICTED: cyclin-T1-4 [Gossypium raimondii]	[more]
gi\|590621708\|ref\|XP_007024847.1\|	4.1e-28	80.26	Cyclin family protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|356521602\|ref\|XP_003529443.1\|	2.2e-26	80.52	PREDICTED: cyclin-T1-3-like isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0008150	biological_process
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:1901409	positive regulation of phosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0032786	positive regulation of DNA-templated transcription, elongation
cellular_component	GO:0008024	cyclin/CDK positive transcription elongation factor complex
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU57289	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009179	Cla009179.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU57289	WMU57289	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013763	Cyclin-like	GENE3D	G3DSA:1.10.472.10		coord: 21..75 score: 1.
IPR013763	Cyclin-like	unknown	SSF47954	Cyclin-like	coord: 29..75 score: 1.8
None	No IPR available	PANTHER	PTHR10026	CYCLIN	coord: 32..76 score: 3.3
None	No IPR available	PANTHER	PTHR10026:SF75	SUBFAMILY NOT NAMED	coord: 32..76 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009179	Cla97C01G009250	Watermelon (97103) v2	wmwmbB237
Cla009179	Csa1G714690	Cucumber (Chinese Long) v2	cuwmB056
Cla009179	ClCG01G008990	Watermelon (Charleston Gray)	wcgwmB144
Cla009179	CSPI01G34830	Wild cucumber (PI 183967)	cpiwmB059
Cla009179	Cucsa.236640	Cucumber (Gy14) v1	cgywmB442
Cla009179	CmaCh18G005360	Cucurbita maxima (Rimu)	cmawmB380
Cla009179	CmaCh13G004480	Cucurbita maxima (Rimu)	cmawmB203
Cla009179	CmoCh18G005150	Cucurbita moschata (Rifu)	cmowmB373
Cla009179	CmoCh13G004830	Cucurbita moschata (Rifu)	cmowmB190
Cla009179	Lsi02G010130	Bottle gourd (USVL1VR-Ls)	lsiwmB202
Cla009179	Cp4.1LG20g05940	Cucurbita pepo (Zucchini)	cpewmB514
Cla009179	CsGy1G033330	Cucumber (Gy14) v2	cgybwmB056
Cla009179	MELO3C021786.2	Melon (DHL92) v3.6.1	medwmB153
Cla009179	Carg21433	Silver-seed gourd	carwmB0395
Cla009179	Carg25401	Silver-seed gourd	carwmB0447
Cla009179	CsaV3_1G046690	Cucumber (Chinese Long) v3	cucwmB062
Cla009179	Bhi08G000782	Wax gourd	wgowmB508

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009179	Melon (DHL92) v3.5.1	mewmB158
Cla009179	Cucurbita pepo (Zucchini)	cpewmB040