WMU57289 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU57289
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cyclin-T1-like protein
Location	Chr1 : 23912926 .. 23922159 (+)
Sequence length	229

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGGTCCTCAAAGAGTTCTCTAAGTAAAAGTCAAGATGAAGCAGGTCGTTGGTATATGTCCAGAAAGGAAATTGAAGAAAATTCCCCATCAAGAAGAGATGGTATTGACTTGAAGAAGGAGACTTATTTACGGAAGTCATACTGCACATTTTTGCAAGATCTGGGGCATGAGGCTCAAAGTGCCTCAAGTAACGATAGCCACAGCAATAATATTCTGTCATCGATTCTT

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU57289 vs. TAIR10
Match: AT5G45190.2 (AT5G45190.2 Cyclin family protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-17
Identity = 39/45 (86.67%), Postives = 38/45 (84.44%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           Q+E  RWY  RKEIEENSPSR DGIDLKKETYLRKSYCTFLQDLG
Sbjct: 27  QEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLG 71

Query: 92   151
           
Sbjct: 87   71

Query: 152  167
           
Sbjct: 147  71

HSP 2 Score: 32.3 bits (72), Expect = 1.5e-01
Identity = 19/37 (51.35%), Postives = 19/37 (51.35%), Query Frame = 3


Query: 150 FCKIWGMRLKVP-----------QVTIATAIIFCHRF 209
           F +  GMRLK+             VTIATAIIFCHRF
Sbjct: 66  FLQDLGMRLKLAWFLDIIAYVCTDVTIATAIIFCHRF 102

Query: 210  228
           
Sbjct: 126  102

[Close]

BLAST of WMU57289 vs. TAIR10
Match: AT4G19600.1 (AT4G19600.1 Cyclin family protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-17
Identity = 39/45 (86.67%), Postives = 37/45 (82.22%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           QDE  RWY  RKEIEENSPSR D IDLKKETYLRKSYCTFLQDLG
Sbjct: 27  QDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLG 71

Query: 92   151
           
Sbjct: 87   71

Query: 152  167
           
Sbjct: 147  71

HSP 2 Score: 47.0 bits (110), Expect = 6.0e-06
Identity = 22/26 (84.62%), Postives = 21/26 (80.77%), Query Frame = 3


Query: 150 FCKIWGMRLKVPQVTIATAIIFCHRF 209
           F +  GMRLKVPQVTIATAIIFCHRF
Sbjct: 66  FLQDLGMRLKVPQVTIATAIIFCHRF 91

Query: 210  228
           
Sbjct: 126  91

[Close]

BLAST of WMU57289 vs. TAIR10
Match: AT1G27630.1 (AT1G27630.1 cyclin T 1;3)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-12
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           Q E  +WY SR+EIE  SPSR+DGIDL KE++LR SYCTFLQ LG
Sbjct: 28  QCETSKWYFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLG 72

Query: 92   151
           
Sbjct: 88   72

Query: 152  167
           
Sbjct: 148  72

[Close]

BLAST of WMU57289 vs. TAIR10
Match: AT4G19560.1 (AT4G19560.1 Cyclin family protein)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-12
Identity = 32/44 (72.73%), Postives = 33/44 (75.00%), Query Frame = 2


Query: 35  DEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 94
           DE   W+ SR+EIE NSPSRRDGIDLK ET LR SYCTFL+ LG
Sbjct: 26  DEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILG 69

Query: 95   154
           
Sbjct: 86   69

Query: 155  167
           
Sbjct: 146  69

HSP 2 Score: 45.4 bits (106), Expect = 1.7e-05
Identity = 21/26 (80.77%), Postives = 20/26 (76.92%), Query Frame = 3


Query: 150 FCKIWGMRLKVPQVTIATAIIFCHRF 209
           F +I G RLKVPQVTIATAI FCHRF
Sbjct: 64  FLEILGERLKVPQVTIATAIFFCHRF 89

Query: 210  228
           
Sbjct: 124  89

[Close]

BLAST of WMU57289 vs. TAIR10
Match: AT1G35440.1 (AT1G35440.1 cyclin T1;1)

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-08
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 2


Query: 38  EAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 97
           E   WY +R+ IE+ SPSR DGI+LK+ET+ R SY +FLQ+LG
Sbjct: 3   ETKNWYNTREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELG 45

Query: 98   157
           
Sbjct: 63   45

Query: 158  167
           
Sbjct: 123  45

HSP 2 Score: 32.3 bits (72), Expect = 1.5e-01
Identity = 15/26 (57.69%), Postives = 15/26 (57.69%), Query Frame = 3


Query: 150 FCKIWGMRLKVPQVTIATAIIFCHRF 209
           F +  G RL  PQ TIATAI+ C RF
Sbjct: 40  FLQELGQRLNNPQKTIATAIVLCQRF 65

Query: 210  228
           
Sbjct: 100  65

[Close]

BLAST of WMU57289 vs. Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-16
Identity = 39/45 (86.67%), Postives = 38/45 (84.44%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           Q+E  RWY  RKEIEENSPSR DGIDLKKETYLRKSYCTFLQDLG
Sbjct: 27  QEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLG 71

Query: 92   151
           
Sbjct: 87   71

Query: 152  167
           
Sbjct: 147  71

HSP 2 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 22/26 (84.62%), Postives = 21/26 (80.77%), Query Frame = 3


Query: 150 FCKIWGMRLKVPQVTIATAIIFCHRF 209
           F +  GMRLKVPQVTIATAIIFCHRF
Sbjct: 66  FLQDLGMRLKVPQVTIATAIIFCHRF 91

Query: 210  228
           
Sbjct: 126  91

[Close]

BLAST of WMU57289 vs. Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.6e-16
Identity = 39/45 (86.67%), Postives = 37/45 (82.22%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           QDE  RWY  RKEIEENSPSR D IDLKKETYLRKSYCTFLQDLG
Sbjct: 27  QDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLG 71

Query: 92   151
           
Sbjct: 87   71

Query: 152  167
           
Sbjct: 147  71

HSP 2 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 22/26 (84.62%), Postives = 21/26 (80.77%), Query Frame = 3


Query: 150 FCKIWGMRLKVPQVTIATAIIFCHRF 209
           F +  GMRLKVPQVTIATAIIFCHRF
Sbjct: 66  FLQDLGMRLKVPQVTIATAIIFCHRF 91

Query: 210  228
           
Sbjct: 126  91

[Close]

BLAST of WMU57289 vs. Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15
Identity = 37/39 (94.87%), Postives = 36/39 (92.31%), Query Frame = 2


Query: 50  WYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 109
           WY SRKEIEENSPSRRDGIDLKKE+YLRKSYCTFLQDLG
Sbjct: 36  WYFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLG 74

Query: 110  167
           
Sbjct: 96   74

HSP 2 Score: 46.6 bits (109), Expect = 1.4e-04
Identity = 21/26 (80.77%), Postives = 21/26 (80.77%), Query Frame = 3


Query: 150 FCKIWGMRLKVPQVTIATAIIFCHRF 209
           F +  GMRLKVPQVTIATAI+FCHRF
Sbjct: 69  FLQDLGMRLKVPQVTIATAIVFCHRF 94

Query: 210  228
           
Sbjct: 129  94

[Close]

BLAST of WMU57289 vs. Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-14
Identity = 36/39 (92.31%), Postives = 35/39 (89.74%), Query Frame = 2


Query: 50  WYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 109
           WY SRKEIEENS SRRDGIDLKKE+YLRKSYCTFLQDLG
Sbjct: 37  WYFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLG 75

Query: 110  167
           
Sbjct: 97   75

HSP 2 Score: 46.6 bits (109), Expect = 1.4e-04
Identity = 21/26 (80.77%), Postives = 21/26 (80.77%), Query Frame = 3


Query: 150 FCKIWGMRLKVPQVTIATAIIFCHRF 209
           F +  GMRLKVPQVTIATAI+FCHRF
Sbjct: 70  FLQDLGMRLKVPQVTIATAIVFCHRF 95

Query: 210  228
           
Sbjct: 130  95

[Close]

BLAST of WMU57289 vs. Swiss-Prot
Match: CCT13_ARATH (Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-11
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           Q E  +WY SR+EIE  SPSR+DGIDL KE++LR SYCTFLQ LG
Sbjct: 28  QCETSKWYFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLG 72

Query: 92   151
           
Sbjct: 88   72

Query: 152  167
           
Sbjct: 148  72

[Close]

BLAST of WMU57289 vs. NCBI nr
Match: gi|778664653|ref|XP_011660325.1| (PREDICTED: cyclin-T1-3 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG
Sbjct: 27  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 71

Query: 92   151
           
Sbjct: 87   71

Query: 152  167
           
Sbjct: 147  71

[Close]

BLAST of WMU57289 vs. NCBI nr
Match: gi|659118350|ref|XP_008459075.1| (PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-5 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG
Sbjct: 27  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 71

Query: 92   151
           
Sbjct: 87   71

Query: 152  167
           
Sbjct: 147  71

[Close]

BLAST of WMU57289 vs. NCBI nr
Match: gi|823245164|ref|XP_012455251.1| (PREDICTED: cyclin-T1-4 [Gossypium raimondii])

HSP 1 Score: 91.7 bits (226), Expect = 6.1e-16
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           Q+E GRWY SRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG
Sbjct: 27  QEEVGRWYFSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 71

Query: 92   151
           
Sbjct: 87   71

Query: 152  167
           
Sbjct: 147  71

[Close]

BLAST of WMU57289 vs. NCBI nr
Match: gi|590621708|ref|XP_007024847.1| (Cyclin family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 6.1e-16
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 2


Query: 32  QDEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 91
           Q+E GRWY SRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG
Sbjct: 27  QEEVGRWYFSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 71

Query: 92   151
           
Sbjct: 87   71

Query: 152  167
           
Sbjct: 147  71

[Close]

BLAST of WMU57289 vs. NCBI nr
Match: gi|296082684|emb|CBI21689.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 2


Query: 35  DEAGRWYMSRKEIEENSPSRRDGIDLKKETYLRKSYCTFLQDLG 94
           +E GRWY+SRKEIEENSPS+RDGIDLKKETYLRKSYCTFLQDLG
Sbjct: 28  EEGGRWYLSRKEIEENSPSKRDGIDLKKETYLRKSYCTFLQDLG 71

Query: 95   154
           
Sbjct: 88   71

Query: 155  167
           
Sbjct: 148  71

The following BLAST results are available for this feature:

BLAST of WMU57289 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45190.2	1.2e-17	86.67	Cyclin family protein	[more]
AT4G19600.1	2.0e-17	86.67	Cyclin family protein	[more]
AT1G27630.1	2.5e-12	68.89	cyclin T 1;3	[more]
AT4G19560.1	4.3e-12	72.73	Cyclin family protein	[more]
AT1G35440.1	2.2e-08	58.14	cyclin T1;1	[more]

BLAST of WMU57289 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCT15_ARATH	2.1e-16	86.67	Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2	[more]
CCT14_ARATH	3.6e-16	86.67	Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1	[more]
CCT14_ORYSJ	3.0e-15	94.87	Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1	[more]
CCT13_ORYSJ	4.4e-14	92.31	Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2	[more]
CCT13_ARATH	4.5e-11	68.89	Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2	[more]

BLAST of WMU57289 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664653\|ref\|XP_011660325.1\|	1.9e-17	100.00	PREDICTED: cyclin-T1-3 [Cucumis sativus]	[more]
gi\|659118350\|ref\|XP_008459075.1\|	1.9e-17	100.00	PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-5 [Cucumis melo]	[more]
gi\|823245164\|ref\|XP_012455251.1\|	6.1e-16	93.33	PREDICTED: cyclin-T1-4 [Gossypium raimondii]	[more]
gi\|590621708\|ref\|XP_007024847.1\|	6.1e-16	93.33	Cyclin family protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|296082684\|emb\|CBI21689.3\|	2.3e-15	90.91	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla009179	Cla009179	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0144009	S1_0144009	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013763	Cyclin-like	GENE3D	G3DSA:1.10.472.10		coord: 6..58 score: 1.
IPR013763	Cyclin-like	unknown	SSF47954	Cyclin-like	coord: 14..58 score: 4.6
None	No IPR available	PANTHER	PTHR10026	CYCLIN	coord: 17..56 score: 1.6
None	No IPR available	PANTHER	PTHR10026:SF75	SUBFAMILY NOT NAMED	coord: 17..56 score: 1.6