Cla009170 (gene) Watermelon (97103) v1

NameCla009170
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionBeta-1 3 glucanase (AHRD V1 ***- Q9M5I9_POPCN); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17
LocationChr1 : 23749669 .. 23749938 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTGATTATGCAATTTTTACTGGGACATCATTGGTTGGAGATGGGCAACTTAATTACCAAAACTTGTTTGATGCCATGTTGGACGTTGTTTACTCTACTTTGGAGAATCGTGGTGGAGGATCATTGGAGATTGTTGTATCCGGGACTGGTTGGCCAACGGATGGTGGAGAGGCGGCAACGATAGACAATGCAAGGACTTACAACAACAATCTAAGTCAACATGTGAAACAAGGGACTGCAAACAAGACAAGGAAGGGTTATTGA

mRNA sequence

ATGGGATTTGATTATGCAATTTTTACTGGGACATCATTGGTTGGAGATGGGCAACTTAATTACCAAAACTTGTTTGATGCCATGTTGGACGTTGTTTACTCTACTTTGGAGAATCGTGGTGGAGGATCATTGGAGATTGTTGTATCCGGGACTGGTTGGCCAACGGATGGTGGAGAGGCGGCAACGATAGACAATGCAAGGACTTACAACAACAATCTAAGTCAACATGTGAAACAAGGGACTGCAAACAAGACAAGGAAGGGTTATTGA

Coding sequence (CDS)

ATGGGATTTGATTATGCAATTTTTACTGGGACATCATTGGTTGGAGATGGGCAACTTAATTACCAAAACTTGTTTGATGCCATGTTGGACGTTGTTTACTCTACTTTGGAGAATCGTGGTGGAGGATCATTGGAGATTGTTGTATCCGGGACTGGTTGGCCAACGGATGGTGGAGAGGCGGCAACGATAGACAATGCAAGGACTTACAACAACAATCTAAGTCAACATGTGAAACAAGGGACTGCAAACAAGACAAGGAAGGGTTATTGA

Protein sequence

MGFDYAIFTGTSLVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAATIDNARTYNNNLSQHVKQGTANKTRKGY
BLAST of Cla009170 vs. Swiss-Prot
Match: BG1_ARATH (Probable glucan endo-1,3-beta-glucosidase BG1 OS=Arabidopsis thaliana GN=BG1 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.7e-22
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 1

Query: 4   DYAIFTGTS-LVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAAT 63
           DYA+FT  S +V D   +YQNLFDAMLD +YS LE  GG SLEIVV+ TGWPT GG    
Sbjct: 215 DYALFTAPSGIVSDPPRSYQNLFDAMLDAMYSALEKSGGASLEIVVAETGWPTGGGTDTN 274

Query: 64  IDNARTYNNNLSQHVKQGTANKTRK 88
           I+NAR YNNNL +HVK GT  +  K
Sbjct: 275 IENARIYNNNLIKHVKNGTPKRPGK 299

BLAST of Cla009170 vs. Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.7e-22
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1

Query: 4   DYAIFTGTSLV-GDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAAT 63
           DYA+FT  S+V  DG   Y+NLFDAMLD VY+ LE  GGGSL++V+S TGWP+  G A T
Sbjct: 227 DYALFTAPSVVVQDGNFGYRNLFDAMLDGVYAALEKAGGGSLKVVISETGWPSAAGTATT 286

Query: 64  IDNARTYNNNLSQHVKQGTANK 85
           IDNART+ +NL QHVK+GT  +
Sbjct: 287 IDNARTFISNLIQHVKEGTPRR 308

BLAST of Cla009170 vs. Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=VIT_06s0061g00120 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-21
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1

Query: 4   DYAIFTGTSLV-GDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAAT 63
           DYA+FT + +V  DG   YQNLFDA+LD +Y+ LE  GG +L+IVVS +GWP++GG AAT
Sbjct: 221 DYALFTASGVVVQDGSYQYQNLFDALLDALYAALEKAGGSNLKIVVSESGWPSEGGTAAT 280

Query: 64  IDNARTYNNNLSQHVKQGTANKT 86
           +DNARTY  NL  HVK GT  K+
Sbjct: 281 VDNARTYYKNLINHVKGGTPRKS 303

BLAST of Cla009170 vs. Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-21
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1

Query: 1   MGFDYAIFTGTSLV-GDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGE 60
           +  DYA+F   S+V  DG L Y+NLFDA +D VY+ LE  GGGSL IVVS +GWP+ GG 
Sbjct: 220 ISLDYALFRSPSVVVQDGSLGYRNLFDASVDAVYAALEKAGGGSLNIVVSESGWPSSGGT 279

Query: 61  AATIDNARTYNNNLSQHVKQGTANK 85
           A ++DNARTYN NL ++VKQGT  +
Sbjct: 280 ATSLDNARTYNTNLVRNVKQGTPKR 304

BLAST of Cla009170 vs. Swiss-Prot
Match: BG3_ARATH (Probable glucan endo-1,3-beta-glucosidase BG3 OS=Arabidopsis thaliana GN=BG3 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-20
Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 1

Query: 4   DYAIFTGTS-LVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAAT 63
           DY +FT  S +V DGQ  Y+NLF A+LD VY++LE  GGGSLEIVVS +GWPT GG A  
Sbjct: 217 DYTLFTAPSTVVNDGQNQYRNLFHAILDTVYASLEKAGGGSLEIVVSESGWPTAGGAATG 276

Query: 64  IDNARTYNNNLSQHVKQGTANK 85
           +DNARTY NNL Q VK G+  +
Sbjct: 277 VDNARTYVNNLIQTVKNGSPRR 298

BLAST of Cla009170 vs. TrEMBL
Match: A0A0A0LYQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555080 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.2e-31
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 1

Query: 1   MGFDYAIFTGTSLVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEA 60
           M  DYAIFTGTSLV DG+ NYQNLFDA+LD VYS LE  GGGSLE+VVS TGWPT+GGEA
Sbjct: 219 MELDYAIFTGTSLVEDGEFNYQNLFDAILDTVYSALEKNGGGSLEVVVSETGWPTEGGEA 278

Query: 61  ATIDNARTYNNNLSQHVKQGTANK 85
           AT+DNARTYNNNL QHVKQGT  +
Sbjct: 279 ATVDNARTYNNNLIQHVKQGTPKR 302

BLAST of Cla009170 vs. TrEMBL
Match: O80357_CUCSA (Beta-1,3-glucanase (Fragment) OS=Cucumis sativus GN=beta-1,3-glucanase PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-25
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1

Query: 12 SLVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAATIDNARTYNN 71
          SLV DG+ NYQNLFDA+LD VYS LE  GGGSLE+VVS TGWPT+GGEAAT+DNARTYNN
Sbjct: 1  SLVEDGEFNYQNLFDAILDTVYSALEKNGGGSLEVVVSETGWPTEGGEAATVDNARTYNN 60

Query: 72 NLSQHVKQGTANK 85
          NL QHVKQGT  +
Sbjct: 61 NLIQHVKQGTPKR 73

BLAST of Cla009170 vs. TrEMBL
Match: A0A145YQC1_ROSRU (Beta-1,3-glucanase OS=Rosa rugosa GN=Glu PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-24
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1

Query: 4   DYAIFTGTSLV-GDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAAT 63
           DYA+FT  S+V  DGQL Y+NLFDAMLD VYS LE  GGGSLEIVVS +GWPT GG A T
Sbjct: 223 DYALFTAPSVVVQDGQLGYRNLFDAMLDAVYSALEKAGGGSLEIVVSESGWPTAGGTATT 282

Query: 64  IDNARTYNNNLSQHVKQGTANK 85
           +DNARTYN+NL QHVK GT  K
Sbjct: 283 VDNARTYNSNLIQHVKGGTPKK 304

BLAST of Cla009170 vs. TrEMBL
Match: U5FNT7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05780g PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 1

Query: 4   DYAIFTGTS-LVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAAT 63
           DYA+FT  S LV D  LNYQNLFDA+LD VY+ LE  GGGSLEIVVS +GWPT GG   +
Sbjct: 204 DYALFTAPSPLVSDPPLNYQNLFDALLDTVYAALEKSGGGSLEIVVSESGWPTAGGTGTS 263

Query: 64  IDNARTYNNNLSQHVKQGTANKTRK 88
           +DNARTYNNNL QHVK+GT  +  K
Sbjct: 264 VDNARTYNNNLVQHVKKGTPKRPGK 288

BLAST of Cla009170 vs. TrEMBL
Match: E9N6U2_9ROSI (1,3-beta-D-glucanase GH17_101 OS=Populus tremula x Populus tremuloides PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.2e-23
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1

Query: 4   DYAIFTG-TSLVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAAT 63
           DYA+FT  +SLV D  LNYQNLFDA+LD VY+ LE  GGGSL+IVVS +GWPT GG   +
Sbjct: 220 DYALFTAPSSLVSDPPLNYQNLFDAILDTVYAALEKSGGGSLDIVVSESGWPTAGGTGTS 279

Query: 64  IDNARTYNNNLSQHVKQGTANKTRK 88
           +DNAR YNNNL QHVK+GT  K  K
Sbjct: 280 VDNARIYNNNLVQHVKRGTPKKPGK 304

BLAST of Cla009170 vs. NCBI nr
Match: gi|778662097|ref|XP_011659353.1| (PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-30
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 1

Query: 1   MGFDYAIFTGTSLVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEA 60
           M  DYAIFTGTSLV DG+ NYQNLFDA+LD VYS LE  GGGSLE+VVS TGWPT+GGEA
Sbjct: 219 MELDYAIFTGTSLVEDGEFNYQNLFDAILDTVYSALEKNGGGSLEVVVSETGWPTEGGEA 278

Query: 61  ATIDNARTYNNNLSQHVKQGTANK 85
           AT+DNARTYNNNL QHVKQGT  +
Sbjct: 279 ATVDNARTYNNNLIQHVKQGTPKR 302

BLAST of Cla009170 vs. NCBI nr
Match: gi|700210876|gb|KGN65972.1| (hypothetical protein Csa_1G555080 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-30
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 1

Query: 1   MGFDYAIFTGTSLVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEA 60
           M  DYAIFTGTSLV DG+ NYQNLFDA+LD VYS LE  GGGSLE+VVS TGWPT+GGEA
Sbjct: 219 MELDYAIFTGTSLVEDGEFNYQNLFDAILDTVYSALEKNGGGSLEVVVSETGWPTEGGEA 278

Query: 61  ATIDNARTYNNNLSQHVKQGTANK 85
           AT+DNARTYNNNL QHVKQGT  +
Sbjct: 279 ATVDNARTYNNNLIQHVKQGTPKR 302

BLAST of Cla009170 vs. NCBI nr
Match: gi|659118414|ref|XP_008459107.1| (PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 9.6e-29
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 1

Query: 1   MGFDYAIFTGTSLVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEA 60
           M  DYAIFTGTSLV DG+ NYQNLF A+LD VYS LE  GGGSLEIVVS TGWPTDGGEA
Sbjct: 219 MELDYAIFTGTSLVVDGEFNYQNLFHAILDTVYSALEKNGGGSLEIVVSETGWPTDGGEA 278

Query: 61  ATIDNARTYNNNLSQHVKQGTANK 85
           AT+DNARTY NNL Q VKQGT  +
Sbjct: 279 ATVDNARTYTNNLIQRVKQGTPKR 302

BLAST of Cla009170 vs. NCBI nr
Match: gi|3273194|dbj|BAA31142.1| (beta-1,3-glucanase [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-25
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1

Query: 12 SLVGDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAATIDNARTYNN 71
          SLV DG+ NYQNLFDA+LD VYS LE  GGGSLE+VVS TGWPT+GGEAAT+DNARTYNN
Sbjct: 1  SLVEDGEFNYQNLFDAILDTVYSALEKNGGGSLEVVVSETGWPTEGGEAATVDNARTYNN 60

Query: 72 NLSQHVKQGTANK 85
          NL QHVKQGT  +
Sbjct: 61 NLIQHVKQGTPKR 73

BLAST of Cla009170 vs. NCBI nr
Match: gi|1015887691|gb|AMW88247.1| (beta-1,3-glucanase [Rosa rugosa])

HSP 1 Score: 118.6 bits (296), Expect = 5.5e-24
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1

Query: 4   DYAIFTGTSLV-GDGQLNYQNLFDAMLDVVYSTLENRGGGSLEIVVSGTGWPTDGGEAAT 63
           DYA+FT  S+V  DGQL Y+NLFDAMLD VYS LE  GGGSLEIVVS +GWPT GG A T
Sbjct: 223 DYALFTAPSVVVQDGQLGYRNLFDAMLDAVYSALEKAGGGSLEIVVSESGWPTAGGTATT 282

Query: 64  IDNARTYNNNLSQHVKQGTANK 85
           +DNARTYN+NL QHVK GT  K
Sbjct: 283 VDNARTYNSNLIQHVKGGTPKK 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
BG1_ARATH6.7e-2261.18Probable glucan endo-1,3-beta-glucosidase BG1 OS=Arabidopsis thaliana GN=BG1 PE=... [more]
E13B_PRUPE8.7e-2260.98Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 S... [more]
E13B_VITVI1.1e-2159.04Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=VIT_06s0061g00120 PE=1 SV=... [more]
E13A_SOYBN2.5e-2157.65Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1[more]
BG3_ARATH1.3e-2060.98Probable glucan endo-1,3-beta-glucosidase BG3 OS=Arabidopsis thaliana GN=BG3 PE=... [more]
Match NameE-valueIdentityDescription
A0A0A0LYQ8_CUCSA7.2e-3178.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555080 PE=3 SV=1[more]
O80357_CUCSA1.5e-2578.08Beta-1,3-glucanase (Fragment) OS=Cucumis sativus GN=beta-1,3-glucanase PE=2 SV=1[more]
A0A145YQC1_ROSRU3.8e-2471.95Beta-1,3-glucanase OS=Rosa rugosa GN=Glu PE=2 SV=1[more]
U5FNT7_POPTR1.9e-2367.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05780g PE=3 SV=1[more]
E9N6U2_9ROSI7.2e-2365.881,3-beta-D-glucanase GH17_101 OS=Populus tremula x Populus tremuloides PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|778662097|ref|XP_011659353.1|1.0e-3078.57PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis sativus... [more]
gi|700210876|gb|KGN65972.1|1.0e-3078.57hypothetical protein Csa_1G555080 [Cucumis sativus][more]
gi|659118414|ref|XP_008459107.1|9.6e-2977.38PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Cucumis melo][more]
gi|3273194|dbj|BAA31142.1|2.2e-2578.08beta-1,3-glucanase [Cucumis sativus][more]
gi|1015887691|gb|AMW88247.1|5.5e-2471.95beta-1,3-glucanase [Rosa rugosa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000490Glyco_hydro_17
IPR013781Glycoside hydrolase, catalytic domain
IPR017853Glycoside_hydrolase_SF
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0030488 tRNA methylation
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0008152 metabolic process
cellular_component GO:0031515 tRNA (m1A) methyltransferase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0005618 cell wall
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0016429 tRNA (adenine-N1-)-methyltransferase activity
molecular_function GO:0042973 glucan endo-1,3-beta-D-glucosidase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009170Cla009170.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000490Glycoside hydrolase family 17PFAMPF00332Glyco_hydro_17coord: 3..85
score: 8.0
IPR013781Glycoside hydrolase, catalytic domainGENE3DG3DSA:3.20.20.80coord: 3..86
score: 3.5
IPR017853Glycoside hydrolase superfamilyunknownSSF51445(Trans)glycosidasescoord: 3..82
score: 6.32
NoneNo IPR availablePANTHERPTHR32227FAMILY NOT NAMEDcoord: 7..81
score: 6.4
NoneNo IPR availablePANTHERPTHR32227:SF49BETA-1,3-GLUCANASE 1-RELATEDcoord: 7..81
score: 6.4