Cla008944 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008944
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	High mobility group protein (AHRD V1 **-- Q4ZH67_CUCSA); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2
Location	Chr10 : 1988125 .. 1989197 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACTAAGTGAGTTCATCGATAACTTTTAATTTTTTTATGTGTATTTTTATCTATATGATAGTATGTTTAGGAGTAGGCAGTTGGATCGGACGCGTTCGTTTTGTTATCTTTGGTTCTGTTCTCAGTTATTTATTATGTATTTTGTTATTTGATTTTTACTAGATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGTACATCTCTCTCTCTTTCTCTCTCAAACTTATCCTTTTCTTTATCGATTTTCAGATCCGTGTAATTATGGATTTTTTACTGGTTCGATTTCTTTGTTGATGAACATATAGGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGTAAGTAGTTTTAGATCTGTGCATTGTTTTTCTTTTCGTTGTTCTGTTGGAGATTCTTAGGTTTTTAAAGCGTGCTCGTTCGGTCAAATGAACAGGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGTAAGTAATTACATGGAACTTGGTGTTTGCTTGCTCTGTGCTGTGGAAATTGCATAAAAGAACTCATTTGCTCGTATGTGTGCTTTGTTTTTCAGGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGTAAGTTCTCTTATGTTATTTCATTTTCTAATAGTATTTATACACATCATTATTCTCAACCGTTCTAATCATGTGCCATACTGTTAGGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGTTCGTTTACAAGTTATGCCTCAAATATGTAATTCTAGCTATAAAACAAAATAATAACCTTTTGACAATCTTTGGTTTTGAATTGCAGGAAGACGATGATGAGTAA

mRNA sequence

ATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACTAAATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGAAGACGATGATGAGTAA

Coding sequence (CDS)

ATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACTAAATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGAAGACGATGATGAGTAA

Protein sequence

MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE

Homology

[Close]

BLAST of Cla008944 vs. Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-41
Identity = 93/147 (63.27%), Postives = 106/147 (72.11%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLK-SKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSKA   K+D KL   K A  +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  HPNNKSV---------------AAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEE 120
           HPNNKSV               AAEKAP+I+KAEKRK EY K++QAYNK+ A G   AEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 121 EESDKSKSEVNDDDEDDDESGEEDDDE 132
           EESDKS+SEVNDDDED D SGE+D ++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSED 142

[Close]

BLAST of Cla008944 vs. Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.5e-41
Identity = 87/152 (57.24%), Postives = 104/152 (68.42%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKS------AKAAKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK   K+ D KL     GA+ K+       KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  QYKKEHPNNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGG 120
            + KEHP NK+V+A               EKAPY+ K+EKRK EY K+M+AYNK+ AEG 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 132
            G +EEES+KS SEVND+D+D++ SGEE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of Cla008944 vs. Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-36
Identity = 85/152 (55.92%), Postives = 103/152 (67.76%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGAS-----KKSAKAA--KDPNKPKRPASAFFVFMEEFR 60
           MKGGKSK   KK +TKL     GA+     KK AK    KDPNKPKRP SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 61  KQYKKEHPNNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEG 120
           +QYKK+HPNNKSVAA               EKAPY+++A K+K EY  ++QAYNK++ EG
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 120

Query: 121 GNGAEEEESDKSKSEVNDDDEDDDESGEEDDD 131
            +  +EE SDKSKSEVND+DED+++  +EDDD
Sbjct: 121 KD--DEEGSDKSKSEVNDEDEDEEDEEDEDDD 149

[Close]

BLAST of Cla008944 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.1e-36
Identity = 82/146 (56.16%), Postives = 98/146 (67.12%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVAA               EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEEDDDE 132
           ESDKS SEVND+D+ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Cla008944 vs. Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-35
Identity = 78/146 (53.42%), Postives = 98/146 (67.12%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVA---------------AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVA               +EKAPY+ KAEKRK EY K+++AYNK++ EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEEDDDE 132
           ESDKS SEVND+D+ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Cla008944 vs. TrEMBL
Match: A0A0A0L1J4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002290 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-66
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 120
           PNNKSVAAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 61  PNNKSVAAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 120

Query: 121 DDESGEEDDDE 132
           DDESGE++DDE
Sbjct: 121 DDESGEDEDDE 131

[Close]

BLAST of Cla008944 vs. TrEMBL
Match: Q4ZH67_CUCSA (High mobility group protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-63
Identity = 128/146 (87.67%), Postives = 130/146 (89.04%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVA---------------AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVA               AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEEDDDE 132
           ESDKSKSEVNDDDEDDDESGE++DDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

[Close]

BLAST of Cla008944 vs. TrEMBL
Match: W9RKQ5_9ROSA (HMG1/2-like protein OS=Morus notabilis GN=L484_007074 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.9e-52
Identity = 107/142 (75.35%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSKAAP++TDTKLK+K+ GA KK+AK A KDPNKPKRPASAFFVFMEEFR++YKKE
Sbjct: 1   MKGGKSKAAPRRTDTKLKAKAGGAGKKTAKNAGKDPNKPKRPASAFFVFMEEFREKYKKE 60

Query: 61  HPNNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEE 120
           HPNNKSVAA               EKAP++ KAEKRK+EYNK+M AYNKR+AEGGNGA+E
Sbjct: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPFVAKAEKRKSEYNKNMLAYNKRLAEGGNGADE 120

Query: 121 EESDKSKSEVNDDDEDDDESGE 127
           EESDKSKSEVNDDDED+DESGE
Sbjct: 121 EESDKSKSEVNDDDEDEDESGE 142

[Close]

BLAST of Cla008944 vs. TrEMBL
Match: M5VRY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011596mg PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-51
Identity = 109/145 (75.17%), Postives = 123/145 (84.83%), Query Frame = 1


Query: 4   GKSKAA-PKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 63
           GK++AA PK+TDTKLKSKSAGASKK AK A KDPNKPKRPASAFFVFME+FR++YKKEHP
Sbjct: 59  GKARAAAPKRTDTKLKSKSAGASKKPAKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 118

Query: 64  NNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 123
           NNKSVAA               EKAPY+ KAEKRK EYNK++QAYNKR+AEG NGA+EEE
Sbjct: 119 NNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEE 178

Query: 124 SDKSKSEVNDDDEDDDESGEEDDDE 132
           SDKSKSEVNDDDED+DESGEE+DD+
Sbjct: 179 SDKSKSEVNDDDEDEDESGEEEDDD 203

[Close]

BLAST of Cla008944 vs. TrEMBL
Match: M5VR56_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011596mg PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-51
Identity = 109/145 (75.17%), Postives = 123/145 (84.83%), Query Frame = 1


Query: 4   GKSKAA-PKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 63
           GK++AA PK+TDTKLKSKSAGASKK AK A KDPNKPKRPASAFFVFME+FR++YKKEHP
Sbjct: 2   GKARAAAPKRTDTKLKSKSAGASKKPAKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 61

Query: 64  NNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 123
           NNKSVAA               EKAPY+ KAEKRK EYNK++QAYNKR+AEG NGA+EEE
Sbjct: 62  NNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEE 121

Query: 124 SDKSKSEVNDDDEDDDESGEEDDDE 132
           SDKSKSEVNDDDED+DESGEE+DD+
Sbjct: 122 SDKSKSEVNDDDEDEDESGEEEDDD 146

[Close]

BLAST of Cla008944 vs. NCBI nr
Match: gi|700200475|gb|KGN55608.1| (hypothetical protein Csa_3G002290 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.7e-66
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 120
           PNNKSVAAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 61  PNNKSVAAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 120

Query: 121 DDESGEEDDDE 132
           DDESGE++DDE
Sbjct: 121 DDESGEDEDDE 131

[Close]

BLAST of Cla008944 vs. NCBI nr
Match: gi|525507330|ref|NP_001267705.1| (HMG1/2-like protein-like [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.8e-63
Identity = 128/146 (87.67%), Postives = 130/146 (89.04%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVA---------------AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVA               AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEEDDDE 132
           ESDKSKSEVNDDDEDDDESGE++DDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

[Close]

BLAST of Cla008944 vs. NCBI nr
Match: gi|703125233|ref|XP_010103256.1| (HMG1/2-like protein [Morus notabilis])

HSP 1 Score: 211.8 bits (538), Expect = 7.0e-52
Identity = 107/142 (75.35%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSKAAP++TDTKLK+K+ GA KK+AK A KDPNKPKRPASAFFVFMEEFR++YKKE
Sbjct: 1   MKGGKSKAAPRRTDTKLKAKAGGAGKKTAKNAGKDPNKPKRPASAFFVFMEEFREKYKKE 60

Query: 61  HPNNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEE 120
           HPNNKSVAA               EKAP++ KAEKRK+EYNK+M AYNKR+AEGGNGA+E
Sbjct: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPFVAKAEKRKSEYNKNMLAYNKRLAEGGNGADE 120

Query: 121 EESDKSKSEVNDDDEDDDESGE 127
           EESDKSKSEVNDDDED+DESGE
Sbjct: 121 EESDKSKSEVNDDDEDEDESGE 142

[Close]

BLAST of Cla008944 vs. NCBI nr
Match: gi|645273567|ref|XP_008241940.1| (PREDICTED: HMG1/2-like protein [Prunus mume])

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51
Identity = 109/145 (75.17%), Postives = 123/145 (84.83%), Query Frame = 1


Query: 4   GKSKAA-PKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 63
           GK++AA PK+TDTKLKSKSAGASKK AK A KDPNKPKRPASAFFVFME+FR++YKKEHP
Sbjct: 2   GKARAAAPKRTDTKLKSKSAGASKKPAKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 61

Query: 64  NNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 123
           NNKSVAA               EKAPY+ KAEKRK EYNK++QAYNKR+AEG NGA+EEE
Sbjct: 62  NNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGTNGADEEE 121

Query: 124 SDKSKSEVNDDDEDDDESGEEDDDE 132
           SDKSKSEVNDDDED+DESGEE+DD+
Sbjct: 122 SDKSKSEVNDDDEDEDESGEEEDDD 146

[Close]

BLAST of Cla008944 vs. NCBI nr
Match: gi|595807328|ref|XP_007202587.1| (hypothetical protein PRUPE_ppa011596mg [Prunus persica])

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51
Identity = 109/145 (75.17%), Postives = 123/145 (84.83%), Query Frame = 1


Query: 4   GKSKAA-PKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 63
           GK++AA PK+TDTKLKSKSAGASKK AK A KDPNKPKRPASAFFVFME+FR++YKKEHP
Sbjct: 59  GKARAAAPKRTDTKLKSKSAGASKKPAKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 118

Query: 64  NNKSVAA---------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 123
           NNKSVAA               EKAPY+ KAEKRK EYNK++QAYNKR+AEG NGA+EEE
Sbjct: 119 NNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEE 178

Query: 124 SDKSKSEVNDDDEDDDESGEEDDDE 132
           SDKSKSEVNDDDED+DESGEE+DD+
Sbjct: 179 SDKSKSEVNDDDEDEDESGEEEDDD 203

The following BLAST results are available for this feature:

BLAST of Cla008944 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGL_IPONI	1.9e-41	63.27	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGL_SOYBN	5.5e-41	57.24	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
HMGL_VICFA	5.4e-36	55.92	HMG1/2-like protein OS=Vicia faba PE=2 SV=1	[more]
HMGB3_ARATH	9.1e-36	56.16	High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1	[more]
HMGB2_ARATH	2.7e-35	53.42	High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1	[more]

BLAST of Cla008944 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1J4_CUCSA	1.2e-66	97.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002290 PE=4 SV=1	[more]
Q4ZH67_CUCSA	1.2e-63	87.67	High mobility group protein OS=Cucumis sativus PE=2 SV=1	[more]
W9RKQ5_9ROSA	4.9e-52	75.35	HMG1/2-like protein OS=Morus notabilis GN=L484_007074 PE=4 SV=1	[more]
M5VRY8_PRUPE	1.1e-51	75.17	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011596mg PE=4 SV=1	[more]
M5VR56_PRUPE	1.1e-51	75.17	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011596mg PE=4 SV=1	[more]

BLAST of Cla008944 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200475\|gb\|KGN55608.1\|	1.7e-66	97.71	hypothetical protein Csa_3G002290 [Cucumis sativus]	[more]
gi\|525507330\|ref\|NP_001267705.1\|	1.8e-63	87.67	HMG1/2-like protein-like [Cucumis sativus]	[more]
gi\|703125233\|ref\|XP_010103256.1\|	7.0e-52	75.35	HMG1/2-like protein [Morus notabilis]	[more]
gi\|645273567\|ref\|XP_008241940.1\|	1.6e-51	75.17	PREDICTED: HMG1/2-like protein [Prunus mume]	[more]
gi\|595807328\|ref\|XP_007202587.1\|	1.6e-51	75.17	hypothetical protein PRUPE_ppa011596mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009071	HMG_box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU12526	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU22028	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU28475	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU28534	watermelon EST collection version 2.0	transcribed_cluster
WMU65967	watermelon EST collection version 2.0	transcribed_cluster
WMU66367	watermelon EST collection version 2.0	transcribed_cluster
WMU66904	watermelon EST collection version 2.0	transcribed_cluster
WMU74694	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008944	Cla008944.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU28534	WMU28534	transcribed_cluster
WMU22028	WMU22028	transcribed_cluster
WMU28475	WMU28475	transcribed_cluster
WMU74694	WMU74694	transcribed_cluster
WMU12526	WMU12526	transcribed_cluster
WMU66367	WMU66367	transcribed_cluster
WMU66904	WMU66904	transcribed_cluster
WMU65967	WMU65967	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	GENE3D	G3DSA:1.10.30.10		coord: 37..64 score: 5.7E-8coord: 67..94 score: 2.
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 38..65 score: 1.
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 37..93 score: 1.2
IPR009071	High mobility group box domain	PROFILE	PS50118	HMG_BOX_2	coord: 38..92 score: 12
IPR009071	High mobility group box domain	unknown	SSF47095	HMG-box	coord: 30..96 score: 1.06
None	No IPR available	unknown	Coil	Coil	coord: 74..94 scor
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 1..7 score: 2.0E-47coord: 26..131 score: 2.0
None	No IPR available	PANTHER	PTHR13711:SF223	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..7 score: 2.0E-47coord: 26..131 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008944	Cla97C10G184790	Watermelon (97103) v2	wmwmbB056
Cla008944	Csa3G002290	Cucumber (Chinese Long) v2	cuwmB200
Cla008944	MELO3C013723	Melon (DHL92) v3.5.1	mewmB446
Cla008944	ClCG10G000260	Watermelon (Charleston Gray)	wcgwmB056
Cla008944	CSPI03G00280	Wild cucumber (PI 183967)	cpiwmB200
Cla008944	Cucsa.323100	Cucumber (Gy14) v1	cgywmB583
Cla008944	CmaCh16G012750	Cucurbita maxima (Rimu)	cmawmB292
Cla008944	CmaCh06G001570	Cucurbita maxima (Rimu)	cmawmB782
Cla008944	CmoCh16G013260	Cucurbita moschata (Rifu)	cmowmB285
Cla008944	CmoCh06G001480	Cucurbita moschata (Rifu)	cmowmB775
Cla008944	Lsi07G010550	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008944	Cp4.1LG14g10550	Cucurbita pepo (Zucchini)	cpewmB202
Cla008944	Cp4.1LG08g12990	Cucurbita pepo (Zucchini)	cpewmB833
Cla008944	CsGy3G000230	Cucumber (Gy14) v2	cgybwmB188
Cla008944	MELO3C013723.2	Melon (DHL92) v3.6.1	medwmB438
Cla008944	Carg01178	Silver-seed gourd	carwmB0149
Cla008944	Carg19438	Silver-seed gourd	carwmB0425
Cla008944	CsaV3_3G000290	Cucumber (Chinese Long) v3	cucwmB209
Cla008944	Bhi11G000219	Wax gourd	wgowmB026

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008944	Cucurbita pepo (Zucchini)	cpewmB063
Cla008944	Cucurbita pepo (Zucchini)	cpewmB472
Cla008944	Cucurbita pepo (Zucchini)	cpewmB540
Cla008944	Bottle gourd (USVL1VR-Ls)	lsiwmB129
Cla008944	Cucumber (Gy14) v2	cgybwmB422
Cla008944	Melon (DHL92) v3.6.1	medwmB541
Cla008944	Silver-seed gourd	carwmB0398
Cla008944	Silver-seed gourd	carwmB0639
Cla008944	Cucumber (Chinese Long) v3	cucwmB475
Cla008944	Watermelon (97103) v2	wmwmbB049
Cla008944	Wax gourd	wgowmB015
Cla008944	Wax gourd	wgowmB413
Cla008944	Watermelon (97103) v1	wmwmB048
Cla008944	Cucumber (Gy14) v1	cgywmB018
Cla008944	Cucurbita maxima (Rimu)	cmawmB616
Cla008944	Cucurbita maxima (Rimu)	cmawmB813
Cla008944	Cucurbita moschata (Rifu)	cmowmB608
Cla008944	Cucurbita moschata (Rifu)	cmowmB805
Cla008944	Wild cucumber (PI 183967)	cpiwmB465
Cla008944	Melon (DHL92) v3.5.1	mewmB555
Cla008944	Watermelon (Charleston Gray)	wcgwmB118
Cla008944	Cucumber (Chinese Long) v2	cuwmB450