CSPI03G00280 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G00280
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	High mobility group protein
Location	Chr3 : 233762 .. 235388 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGGATCTGTTGAGAGGGAACAATTCACAGCGAAGAAATTGCAAATAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGGGACGAAGAGTAGCCAATGAGAGAAAAGGACGAGGATCGATGACATGGCAAAAGCTTTTTGAAATCCCGCCTAAACCCAGAGATTCAATTGATATCGCGATTTCTCTCTCTCTGTCTCTCTCTTTTAACGAAACCGACTCCCTTCATATCCCTCTCTCTCTCTCGCTTCGCTCTTCACTTCAAACGCCTTTTCCTTCTTTTCCACATAAACACACGCACTCAAAGCCAATCTCAAAACCGCATCACACGAACCTAACTATAAGCCATACCCAATTTTTTTCTCCTCATATTTCACTCTCACACTCTTTCCTTATCTTCTTCTTCCTTCTCCAAACCCTAGAGTTTTACAGGTTAACTCCCAATCTCTCCGCCGCTCCTTCCATTCTTCTTCCTTTTCTCCGCCCTTTTTTCTTATAATCATTTCCTCTTTTTCTCCTTCCCTCTATCTGCAGGATTCATCATGAAGGGCGGAAAATCCAAGGGGGCGCCTAAAAAGACCGATACCAAGTGAGTTCATCGATTACTTTTTTTTTTTTTTTATGTATATTTTTTTTATCTATATATGTGTTAGTATGTTCGACTTAAGCTGTTGGATCGGATACGTTCGTCTTGTAATGTTTGGTTCTGTACTCAGTTATTTATTATGTGTTTTGTTATTTGATTTTTGTTAGGTTGAAAAGCAAAAGTGCTGGAGCTAGTAAGAAATCAGCGAAGGCTGCAAAGGATCCTAACAAGCCAAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGTACATCTCTCTTTCTCAAACTTGTCATGTTTTTTATTTTCAATTTTCAGATCCGTGTTTTTTGTGGAATTTTTACTGGTTTGATTTATTTGTTGGTGAACGTATAGGGAAGAGTTCAGGAAGCAATACAAGAAGGAACATCCTAACAACAAATCCGTCGCTGCTGTAAGTAATTTTAGATCTGTTCATTTTTTATCTTTTTGGTTTGTAGTAGATTCTTAGGTTTTTAAAAGAGCTCTCGTTTGGTCAAATAAACAGGTTGGAAAGGCTGGTGGTGATAAATGGAAATCAATGTCCGACGCTGTAAGTAATTACATGGAATTTGGAGCTATTTTATAGTATTCCTTGTGTTTATTGCATCAAATTACTTGTTGCTCATATGATGACATTATTTACAGGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAATATAACAAGAGCATGCAGGCTTATAATAAGAGAATTGTACGTTATCGTTGATATTTTCCTAATTGTATTTCTACACATTATTGTTCCCAACCGTCTTAATCATGTTTCAAATTCTGTTAGGCGGAAGGAGGCAATGGAGCTGAAGAAGAAGAATCAGATAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGTTCGTTCGTCAACATTTTATGCTTGAATTTTTCCATTTCAGCTATAAAACGAAGCAATGATTACCTGACAATACTTGATTTTGAATTGCAGGACGAAGATGATGAGTAA

mRNA sequence

ATGAAGGGCGGAAAATCCAAGGGGGCGCCTAAAAAGACCGATACCAAGTTGAAAAGCAAAAGTGCTGGAGCTAGTAAGAAATCAGCGAAGGCTGCAAAGGATCCTAACAAGCCAAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAAGAGTTCAGGAAGCAATACAAGAAGGAACATCCTAACAACAAATCCGTCGCTGCTGTTGGAAAGGCTGGTGGTGATAAATGGAAATCAATGTCCGACGCTGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAATATAACAAGAGCATGCAGGCTTATAATAAGAGAATTGCGGAAGGAGGCAATGGAGCTGAAGAAGAAGAATCAGATAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGACGAAGATGATGAGTAA

Coding sequence (CDS)

ATGAAGGGCGGAAAATCCAAGGGGGCGCCTAAAAAGACCGATACCAAGTTGAAAAGCAAAAGTGCTGGAGCTAGTAAGAAATCAGCGAAGGCTGCAAAGGATCCTAACAAGCCAAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAAGAGTTCAGGAAGCAATACAAGAAGGAACATCCTAACAACAAATCCGTCGCTGCTGTTGGAAAGGCTGGTGGTGATAAATGGAAATCAATGTCCGACGCTGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAATATAACAAGAGCATGCAGGCTTATAATAAGAGAATTGCGGAAGGAGGCAATGGAGCTGAAGAAGAAGAATCAGATAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGACGAAGATGATGAGTAA

Homology

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BLAST of CSPI03G00280 vs. Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 102/147 (69.39%), Postives = 119/147 (80.95%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLK-SKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSK    K+D KL   K A  +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEE 120
           HPNNKSVA VGKAGGDKWK ++ AEKAP+I+KAEKRK EY K++QAYNK+ A G   AEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 121 EESDKSKSEVNDDDEDDDESGEDEDDE 147
           EESDKS+SEVNDDDED D SGED+ ++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSED 142

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BLAST of CSPI03G00280 vs. Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-39
Identity = 99/152 (65.13%), Postives = 119/152 (78.29%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKS------AKAAKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK   K+ D KL     GA+ K+       KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  QYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGG 120
            + KEHP NK+V+AVGKA G KWK+MSDAEKAPY+ K+EKRK EY K+M+AYNK+ AEG 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 147
            G +EEES+KS SEVND+D+D++ SGE+EDD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

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BLAST of CSPI03G00280 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.7e-35
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVAAVGKAGG+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKS SEVND+D+ +D S E+EDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

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BLAST of CSPI03G00280 vs. Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-34
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKS SEVND+D+ +D S E+EDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

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BLAST of CSPI03G00280 vs. Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-33
Identity = 96/153 (62.75%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGAS-----KKSAKAA--KDPNKPKRPASAFFVFMEEFR 60
           MKGGKSKG  KK +TKL     GA+     KK AK    KDPNKPKRP SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 61  KQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 120
           +QYKK+HPNNKSVAAVGKA G++WKS+S+ EKAPY+++A K+K EY  ++QAYNK++ EG
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 120

Query: 121 GNGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 147
            +  +EE SDKSKSEVND+DED+++  EDEDD+
Sbjct: 121 KD--DEEGSDKSKSEVNDEDEDEEDE-EDEDDD 149

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BLAST of CSPI03G00280 vs. TrEMBL
Match: Q4ZH67_CUCSA (High mobility group protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-65
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDDEDDDESGEDEDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

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BLAST of CSPI03G00280 vs. TrEMBL
Match: W9RKQ5_9ROSA (HMG1/2-like protein OS=Morus notabilis GN=L484_007074 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 7.6e-54
Identity = 121/142 (85.21%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSK AP++TDTKLK+K+ GA KK+AK A KDPNKPKRPASAFFVFMEEFR++YKKE
Sbjct: 1   MKGGKSKAAPRRTDTKLKAKAGGAGKKTAKNAGKDPNKPKRPASAFFVFMEEFREKYKKE 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEE 120
           HPNNKSVAAVGKAGGDKWKSMSDAEKAP++ KAEKRK+EYNK+M AYNKR+AEGGNGA+E
Sbjct: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPFVAKAEKRKSEYNKNMLAYNKRLAEGGNGADE 120

Query: 121 EESDKSKSEVNDDDEDDDESGE 142
           EESDKSKSEVNDDDED+DESGE
Sbjct: 121 EESDKSKSEVNDDDEDEDESGE 142

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BLAST of CSPI03G00280 vs. TrEMBL
Match: A0A0A0L1J4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002290 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 131/146 (89.73%), Postives = 131/146 (89.73%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVA               AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVA---------------AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDDEDDDESGEDEDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 131

[Close]

BLAST of CSPI03G00280 vs. TrEMBL
Match: M5VRY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011596mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.5e-51
Identity = 121/145 (83.45%), Postives = 137/145 (94.48%), Query Frame = 1


Query: 4   GKSKGA-PKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 63
           GK++ A PK+TDTKLKSKSAGASKK AK A KDPNKPKRPASAFFVFME+FR++YKKEHP
Sbjct: 59  GKARAAAPKRTDTKLKSKSAGASKKPAKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 118

Query: 64  NNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 123
           NNKSVAAVGKAGGDKWKS+S+AEKAPY+ KAEKRK EYNK++QAYNKR+AEG NGA+EEE
Sbjct: 119 NNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEE 178

Query: 124 SDKSKSEVNDDDEDDDESGEDEDDE 147
           SDKSKSEVNDDDED+DESGE+EDD+
Sbjct: 179 SDKSKSEVNDDDEDEDESGEEEDDD 203

[Close]

BLAST of CSPI03G00280 vs. TrEMBL
Match: M5VR56_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011596mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.5e-51
Identity = 121/145 (83.45%), Postives = 137/145 (94.48%), Query Frame = 1


Query: 4   GKSKGA-PKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 63
           GK++ A PK+TDTKLKSKSAGASKK AK A KDPNKPKRPASAFFVFME+FR++YKKEHP
Sbjct: 2   GKARAAAPKRTDTKLKSKSAGASKKPAKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 61

Query: 64  NNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 123
           NNKSVAAVGKAGGDKWKS+S+AEKAPY+ KAEKRK EYNK++QAYNKR+AEG NGA+EEE
Sbjct: 62  NNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEE 121

Query: 124 SDKSKSEVNDDDEDDDESGEDEDDE 147
           SDKSKSEVNDDDED+DESGE+EDD+
Sbjct: 122 SDKSKSEVNDDDEDEDESGEEEDDD 146

[Close]

BLAST of CSPI03G00280 vs. TAIR10
Match: AT1G20693.1 (AT1G20693.1 high mobility group B2)

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-35
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKS SEVND+D+ +D S E+EDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of CSPI03G00280 vs. TAIR10
Match: AT1G20696.2 (AT1G20696.2 high mobility group B3)

HSP 1 Score: 133.7 bits (335), Expect = 9.6e-32
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRI 111
           P NKSVAAVGKAGG+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL 107

[Close]

BLAST of CSPI03G00280 vs. TAIR10
Match: AT2G17560.1 (AT2G17560.1 high mobility group B4)

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-29
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGG+SK     TD +LK++   A KK+ K   DPN+PKRP SAFFVF+E+FRK++   +
Sbjct: 1   MKGGESKAEATSTDQRLKTRGRKAGKKTKK---DPNQPKRPPSAFFVFLEDFRKEFNLAN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVA VGKA G +WK+M+D +KAPY+ KAE RKTEY K++Q YN ++A G N  EE+
Sbjct: 61  PNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-REED 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDED 145
           +SDKSKSEV  D+   +E  ED+D
Sbjct: 121 DSDKSKSEV--DEAVSEEEAEDDD 138

[Close]

BLAST of CSPI03G00280 vs. TAIR10
Match: AT3G51880.2 (AT3G51880.2 high mobility group B1)

HSP 1 Score: 117.5 bits (293), Expect = 7.1e-27
Identity = 86/166 (51.81%), Postives = 105/166 (63.25%), Query Frame = 1


Query: 2   KGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 61
           K GK K AP +  TK +++      K  KA KDPNKPKR  SAFFVF+E+FR  +KKE+P
Sbjct: 24  KVGKRK-APAEKPTKRETR------KEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENP 83

Query: 62  NNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 121
           N K+V+AVGKAGG KWKSMS AEKAPY  KA KRK EY K M AYNK + EG      +E
Sbjct: 84  NVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGS-----DE 143

Query: 122 SDKSKSEVNDDDE---------------------DDDESGEDEDDE 147
           S+KS+SE+ND+DE                     DD+E  E+EDD+
Sbjct: 144 SEKSRSEINDEDEASGEVTIPLSNEELLEKEAAGDDEEEEEEEDDD 177

[Close]

BLAST of CSPI03G00280 vs. TAIR10
Match: AT4G35570.1 (AT4G35570.1 high mobility group B5)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-19
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MK  +++   + TD +LK +     KK+    KDPN+PK+P S FFVF+++FRK++   +
Sbjct: 1   MKDNQTEVESRSTDDRLKVRGNKVGKKT----KDPNRPKKPPSPFFVFLDDFRKEFNLAN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P+NKSV  VG+A G KWK+M++ E+AP++ K++ +KTEY  +MQ YN  +A G     ++
Sbjct: 61  PDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANGNKTTGDD 120

Query: 121 ESDKSKSE 129
           E  +  ++
Sbjct: 121 EKQEKAAD 124

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BLAST of CSPI03G00280 vs. NCBI nr
Match: gi|525507330|ref|NP_001267705.1| (HMG1/2-like protein-like [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 1.6e-65
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDDEDDDESGEDEDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

[Close]

BLAST of CSPI03G00280 vs. NCBI nr
Match: gi|703125233|ref|XP_010103256.1| (HMG1/2-like protein [Morus notabilis])

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 121/142 (85.21%), Postives = 135/142 (95.07%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSK AP++TDTKLK+K+ GA KK+AK A KDPNKPKRPASAFFVFMEEFR++YKKE
Sbjct: 1   MKGGKSKAAPRRTDTKLKAKAGGAGKKTAKNAGKDPNKPKRPASAFFVFMEEFREKYKKE 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEE 120
           HPNNKSVAAVGKAGGDKWKSMSDAEKAP++ KAEKRK+EYNK+M AYNKR+AEGGNGA+E
Sbjct: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPFVAKAEKRKSEYNKNMLAYNKRLAEGGNGADE 120

Query: 121 EESDKSKSEVNDDDEDDDESGE 142
           EESDKSKSEVNDDDED+DESGE
Sbjct: 121 EESDKSKSEVNDDDEDEDESGE 142

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BLAST of CSPI03G00280 vs. NCBI nr
Match: gi|700200475|gb|KGN55608.1| (hypothetical protein Csa_3G002290 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 131/146 (89.73%), Postives = 131/146 (89.73%), Query Frame = 1


Query: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVA               AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVA---------------AEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 147
           ESDKSKSEVNDDDEDDDESGEDEDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 131

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BLAST of CSPI03G00280 vs. NCBI nr
Match: gi|645273567|ref|XP_008241940.1| (PREDICTED: HMG1/2-like protein [Prunus mume])

HSP 1 Score: 209.1 bits (531), Expect = 5.1e-51
Identity = 121/145 (83.45%), Postives = 137/145 (94.48%), Query Frame = 1


Query: 4   GKSKGA-PKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 63
           GK++ A PK+TDTKLKSKSAGASKK AK A KDPNKPKRPASAFFVFME+FR++YKKEHP
Sbjct: 2   GKARAAAPKRTDTKLKSKSAGASKKPAKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 61

Query: 64  NNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 123
           NNKSVAAVGKAGGDKWKS+S+AEKAPY+ KAEKRK EYNK++QAYNKR+AEG NGA+EEE
Sbjct: 62  NNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGTNGADEEE 121

Query: 124 SDKSKSEVNDDDEDDDESGEDEDDE 147
           SDKSKSEVNDDDED+DESGE+EDD+
Sbjct: 122 SDKSKSEVNDDDEDEDESGEEEDDD 146

[Close]

BLAST of CSPI03G00280 vs. NCBI nr
Match: gi|595807312|ref|XP_007202585.1| (hypothetical protein PRUPE_ppa011596mg [Prunus persica])

HSP 1 Score: 209.1 bits (531), Expect = 5.1e-51
Identity = 121/145 (83.45%), Postives = 137/145 (94.48%), Query Frame = 1


Query: 4   GKSKGA-PKKTDTKLKSKSAGASKKSAK-AAKDPNKPKRPASAFFVFMEEFRKQYKKEHP 63
           GK++ A PK+TDTKLKSKSAGASKK AK A KDPNKPKRPASAFFVFME+FR++YKKEHP
Sbjct: 2   GKARAAAPKRTDTKLKSKSAGASKKPAKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 61

Query: 64  NNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEE 123
           NNKSVAAVGKAGGDKWKS+S+AEKAPY+ KAEKRK EYNK++QAYNKR+AEG NGA+EEE
Sbjct: 62  NNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEE 121

Query: 124 SDKSKSEVNDDDEDDDESGEDEDDE 147
           SDKSKSEVNDDDED+DESGE+EDD+
Sbjct: 122 SDKSKSEVNDDDEDEDESGEEEDDD 146

The following BLAST results are available for this feature:

BLAST of CSPI03G00280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGL_IPONI	2.0e-39	69.39	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGL_SOYBN	2.6e-39	65.13	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
HMGB3_ARATH	6.7e-35	63.70	High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1	[more]
HMGB2_ARATH	4.3e-34	61.64	High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1	[more]
HMGL_VICFA	2.8e-33	62.75	HMG1/2-like protein OS=Vicia faba PE=2 SV=1	[more]

BLAST of CSPI03G00280 vs. TrEMBL


Match Name	E-value	Identity	Description
Q4ZH67_CUCSA	1.1e-65	100.00	High mobility group protein OS=Cucumis sativus PE=2 SV=1	[more]
W9RKQ5_9ROSA	7.6e-54	85.21	HMG1/2-like protein OS=Morus notabilis GN=L484_007074 PE=4 SV=1	[more]
A0A0A0L1J4_CUCSA	1.3e-53	89.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002290 PE=4 SV=1	[more]
M5VRY8_PRUPE	3.5e-51	83.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011596mg PE=4 SV=1	[more]
M5VR56_PRUPE	3.5e-51	83.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011596mg PE=4 SV=1	[more]

BLAST of CSPI03G00280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20693.1	2.4e-35	61.64	high mobility group B2	[more]
AT1G20696.2	9.6e-32	65.45	high mobility group B3	[more]
AT2G17560.1	2.6e-29	56.25	high mobility group B4	[more]
AT3G51880.2	7.1e-27	51.81	high mobility group B1	[more]
AT4G35570.1	4.2e-19	39.84	high mobility group B5	[more]

BLAST of CSPI03G00280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507330\|ref\|NP_001267705.1\|	1.6e-65	100.00	HMG1/2-like protein-like [Cucumis sativus]	[more]
gi\|703125233\|ref\|XP_010103256.1\|	1.1e-53	85.21	HMG1/2-like protein [Morus notabilis]	[more]
gi\|700200475\|gb\|KGN55608.1\|	1.9e-53	89.73	hypothetical protein Csa_3G002290 [Cucumis sativus]	[more]
gi\|645273567\|ref\|XP_008241940.1\|	5.1e-51	83.45	PREDICTED: HMG1/2-like protein [Prunus mume]	[more]
gi\|595807312\|ref\|XP_007202585.1\|	5.1e-51	83.45	hypothetical protein PRUPE_ppa011596mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009071	HMG_box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G00280.1	CSPI03G00280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	GENE3D	G3DSA:1.10.30.10		coord: 36..109 score: 3.5
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 38..107 score: 2.3
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 37..108 score: 4.4
IPR009071	High mobility group box domain	PROFILE	PS50118	HMG_BOX_2	coord: 38..107 score: 20
IPR009071	High mobility group box domain	unknown	SSF47095	HMG-box	coord: 30..111 score: 7.2
None	No IPR available	unknown	Coil	Coil	coord: 89..109 scor
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 1..7 score: 3.0E-66coord: 26..146 score: 3.0
None	No IPR available	PANTHER	PTHR13711:SF223	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 26..146 score: 3.0E-66coord: 1..7 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G00280	Cla008944	Watermelon (97103) v1	cpiwmB200
CSPI03G00280	Csa3G002290	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G00280	MELO3C013723	Melon (DHL92) v3.5.1	cpimeB240
CSPI03G00280	ClCG10G000260	Watermelon (Charleston Gray)	cpiwcgB190
CSPI03G00280	Lsi07G010550	Bottle gourd (USVL1VR-Ls)	cpilsiB227
CSPI03G00280	MELO3C013723.2	Melon (DHL92) v3.6.1	cpimedB225
CSPI03G00280	CsaV3_3G000290	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G00280	Cla97C10G184790	Watermelon (97103) v2	cpiwmbB184
CSPI03G00280	Bhi11G000219	Wax gourd	cpiwgoB226
CSPI03G00280	Cucsa.323100	Cucumber (Gy14) v1	cgycpiB484
CSPI03G00280	CmaCh16G012750	Cucurbita maxima (Rimu)	cmacpiB332
CSPI03G00280	CmaCh06G001570	Cucurbita maxima (Rimu)	cmacpiB840
CSPI03G00280	CmoCh16G013260	Cucurbita moschata (Rifu)	cmocpiB323
CSPI03G00280	CmoCh06G001480	Cucurbita moschata (Rifu)	cmocpiB825
CSPI03G00280	Cp4.1LG02g08320	Cucurbita pepo (Zucchini)	cpecpiB557
CSPI03G00280	Cp4.1LG08g12990	Cucurbita pepo (Zucchini)	cpecpiB853
CSPI03G00280	Cp4.1LG14g10550	Cucurbita pepo (Zucchini)	cpecpiB215
CSPI03G00280	CsGy3G000230	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G00280	Carg19438	Silver-seed gourd	carcpiB0467
CSPI03G00280	Carg01178	Silver-seed gourd	carcpiB0179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G00280	Melon (DHL92) v3.6.1	cpimedB254
CSPI03G00280	Cucumber (Gy14) v2	cgybcpiB272
CSPI03G00280	Silver-seed gourd	carcpiB0441
CSPI03G00280	Silver-seed gourd	carcpiB0671
CSPI03G00280	Cucumber (Chinese Long) v3	cpicucB184
CSPI03G00280	Watermelon (97103) v2	cpiwmbB182
CSPI03G00280	Wax gourd	cpiwgoB329
CSPI03G00280	Wild cucumber (PI 183967)	cpicpiB133
CSPI03G00280	Cucumber (Gy14) v1	cgycpiB025
CSPI03G00280	Cucurbita maxima (Rimu)	cmacpiB666
CSPI03G00280	Cucurbita maxima (Rimu)	cmacpiB871
CSPI03G00280	Cucurbita moschata (Rifu)	cmocpiB658
CSPI03G00280	Cucurbita moschata (Rifu)	cmocpiB852
CSPI03G00280	Cucumber (Chinese Long) v2	cpicuB156
CSPI03G00280	Melon (DHL92) v3.5.1	cpimeB258
CSPI03G00280	Watermelon (Charleston Gray)	cpiwcgB212
CSPI03G00280	Watermelon (97103) v1	cpiwmB262
CSPI03G00280	Cucurbita pepo (Zucchini)	cpecpiB064
CSPI03G00280	Cucurbita pepo (Zucchini)	cpecpiB485
CSPI03G00280	Bottle gourd (USVL1VR-Ls)	cpilsiB164