Bhi11G000219 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000219
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	high mobility group B protein 2-like
Location	chr11 : 5982310 .. 5984140 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGAGGCGACGAGGAGCCAATGAGAAGGGAGGACGAGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGGAGTTTCAATTGATATCGCGATTTCTCTCTCCCTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCTCGCTTCGCTCTTCCCTTCAAAGGGCCTTCCACATAACACTCGAAGCCAATCCCAAAACGCCTCACAAGAACCAAACCAAATTTCTCCCCACATTTCACTCTCACACTCTCTCCTTATCTTCCTCCCAAACCCTAGAGTTTTACAGGTAAACTCCCAATCTCTCCGCCGCTCGCTCGCTCGCTCGTTCTTCGTCTCTCCACCGGTTTTTTCTATCTTTACCTTTTTTCTCCTTTGTATATCTGCAGGATTCATCATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACCAAGTGAGTTCATCGATAACTTATAATTTTTCTGTATATTTTTTTATCTATATGTGTTAGTACGTTCTGGAGTTGGCAGTTGGATCGGACGCGTTCGTTTTTTGTAATCTTTGGTTCTGTTCTCAGTCAATGATCATGTCTTTCGTTATTTGATTTTTTCTAGGTTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTCTTCATGTACATCTCTCTCTCTCTCTCTCTAAAGCTTATTCTGTTTTTTCTTTTCAATTTTTAGATCCATTTTATTACCGATTTCTTTACTGGTTCGATTTATTTGTTTATGAACATATAGGGAGGAGTTCAGGAAGCAGTACAAGAAAGAGCATCCTAATAACAAATCCGTTGCCGCTGTAAGTAACTCTAGATCTGCGCAGTGTTTCTCTTTTCGTTGGTCTGTAGGAGATTCTTAGCTTTTTAAAAGCGTGGTTGTTTGGTCAAACGAACAGGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGTGAGTAATTACATGGAACTTGTTGATATTTCTCACTATGTTATGTGGAAATTGCATAAAATTACTTACTGTTCATATGTTGTTTACTTTAATTTCAGGAGAAAGCACCTTATATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAATAAAAGCATGCAAGCTTATAATAAGAGAATTGTACGCTATCTTTTGTTATTTTTATTTCTAATAATATTTCTTCACATCATTATTCCCAACGGTCTGAATCATGTGCCTTTATGTTAGGCGGAGGGAGGAAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGACGATGATGAAGATGATGATGAGAGTGGAGAGGTTCGTTCACAAGTTATGCCTGAAATGTGTAATTCTAGCTACAATGCAAAGCGGTAAAATGTTTGACAATCTTTGGTTTTGAATTGCAGGAAGATGATGATGAGTAAATGTTAGGGACGAGGAATGATATGGTGGAAGAACAAGCATTTAACTCCATAGTTTGGAGCAAAAAGACTCGGCAATTTAGATTTTTCTTATGTTCTCGGATAAATAGCTACTTCTTTTCCCTTTTTTTGGGTAATTAGGATAGATGGGAGAAAAGAAATCAAAACAAACAAGGTTCGGGTTGAATGTTAGATTTCTTAAGTTGACATGGATCTGTATTCAAGGAAAATCTGTTAGTAATTGCACAATGATTCAGTTTTAGTTGATTATTCTACTGATGTTCATGAAGTTGTTTCTGTTCTTCTACTTGTTTTGGGAGATGGGGGGA

mRNA sequence

TTGAAGAGGCGACGAGGAGCCAATGAGAAGGGAGGACGAGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGGAGTTTCAATTGATATCGCGATTTCTCTCTCCCTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCTCGCTTCGCTCTTCCCTTCAAAGGGCCTTCCACATAACACTCGAAGCCAATCCCAAAACGCCTCACAAGAACCAAACCAAATTTCTCCCCACATTTCACTCTCACACTCTCTCCTTATCTTCCTCCCAAACCCTAGAGTTTTACAGGATTCATCATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACCAAGTTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTCTTCATGGAGGAGTTCAGGAAGCAGTACAAGAAAGAGCATCCTAATAACAAATCCGTTGCCGCTGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGAGAAAGCACCTTATATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAATAAAAGCATGCAAGCTTATAATAAGAGAATTGCGGAGGGAGGAAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGACGATGATGAAGATGATGATGAGAGTGGAGAGGAAGATGATGATGAGTAAATGTTAGGGACGAGGAATGATATGGTGGAAGAACAAGCATTTAACTCCATAGTTTGGAGCAAAAAGACTCGGCAATTTAGATTTTTCTTATGTTCTCGGATAAATAGCTACTTCTTTTCCCTTTTTTTGGGTAATTAGGATAGATGGGAGAAAAGAAATCAAAACAAACAAGGTTCGGGTTGAATGTTAGATTTCTTAAGTTGACATGGATCTGTATTCAAGGAAAATCTGTTAGTAATTGCACAATGATTCAGTTTTAGTTGATTATTCTACTGATGTTCATGAAGTTGTTTCTGTTCTTCTACTTGTTTTGGGAGATGGGGGGA

Coding sequence (CDS)

ATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACCAAGTTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTCTTCATGGAGGAGTTCAGGAAGCAGTACAAGAAAGAGCATCCTAATAACAAATCCGTTGCCGCTGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGAGAAAGCACCTTATATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAATAAAAGCATGCAAGCTTATAATAAGAGAATTGCGGAGGGAGGAAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGACGATGATGAAGATGATGATGAGAGTGGAGAGGAAGATGATGATGAGTAA

Protein sequence

MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE

Homology

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BLAST of Bhi11G000219 vs. TAIR10
Match: AT1G20693.1 (high mobility group B2)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  +                ASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113

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BLAST of Bhi11G000219 vs. TAIR10
Match: AT1G20696.2 (high mobility group B3)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-25
Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  + T   +  K A    XXXXXXXXXXXXXXX+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPA---XXXXXXXXXXXXXXXXSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRI 111
           P NKSVAAVGKAGG+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL 107

[Close]

BLAST of Bhi11G000219 vs. TAIR10
Match: AT2G17560.1 (high mobility group B4)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-22
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKGG+SKA    TD +LK++   A K                SAFFVF+E+FRK++   +
Sbjct: 1   MKGGESKAEATSTDQRLKTRGRKAGK---KTKKDPNQPKRPPSAFFVFLEDFRKEFNLAN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           PNNKSVA VGKA G +WK+M+D +KAPY+ KAE RKTEY K++Q YN ++A G
Sbjct: 61  PNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASG 110

[Close]

BLAST of Bhi11G000219 vs. TAIR10
Match: AT4G35570.1 (high mobility group B5)

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-15
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MK  +++   + TD +LK +     K                S FFVF+++FRK++   +
Sbjct: 1   MKDNQTEVESRSTDDRLKVRGNKVGK----KTKDPNRPKKPPSPFFVFLDDFRKEFNLAN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           P+NKSV  VG+A G KWK+M++ E+AP++ K++ +KTEY  +MQ YN  +A G
Sbjct: 61  PDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANG 109

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BLAST of Bhi11G000219 vs. TAIR10
Match: AT3G51880.2 (high mobility group B1)

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-13
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 43  SAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAP 88
           SAFFVF+E+FR  +KKE+PN K+V+AVGKAGG KWKSMS AEKAP
Sbjct: 58  SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAP 102

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BLAST of Bhi11G000219 vs. Swiss-Prot
Match: sp|P40619|HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.8e-25
Identity = 66/109 (60.55%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLK-SKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKE 60
           MKGGKSKA   K+D KL   K A  +K                SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNK 109
           HPNNKSVA VGKAGGDKWK ++ AEKAP+I+KAEKRK EY K++QAYNK
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNK 106

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BLAST of Bhi11G000219 vs. Swiss-Prot
Match: sp|P26585|HMGL_SOYBN (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.8e-25
Identity = 66/119 (55.46%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGAS------KXXXXXXXXXXXXXXXASAFFVFMEEFRK 60
           MKGGKSK   K+ D KL     GA+                       SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  QYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
            + KEHP NK+V+AVGKA G KWK+MSDAEKAPY+ K+EKRK EY K+M+AYNK+ AEG
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119

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BLAST of Bhi11G000219 vs. Swiss-Prot
Match: sp|P93047|HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.3e-25
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  + T   +  K A    XXXXXXXXXXXXXXX+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPA---XXXXXXXXXXXXXXXXSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           P NKSVAAVGKAGG+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG 110

[Close]

BLAST of Bhi11G000219 vs. Swiss-Prot
Match: sp|O49596|HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-24
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  +                ASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113

[Close]

BLAST of Bhi11G000219 vs. Swiss-Prot
Match: sp|P40620|HMGL_VICFA (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 75/117 (64.10%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGAS-------KXXXXXXXXXXXXXXXASAFFVFMEEFR 60
           MKGGKSK   KK +TKL     GA+        XXXXXXXXXXXXXXX SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFMADFR 60

Query: 61  KQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRI 111
           +QYKK+HPNNKSVAAVGKA G++WKS+S+ EKAPY+++A K+K EY  ++QAYNK++
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL 117

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BLAST of Bhi11G000219 vs. TrEMBL
Match: tr|A0A1S3BJR7|A0A1S3BJR7_CUCME (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.5e-42
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKSAGASKXXXXXXXXXXXXXX ASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 113

[Close]

BLAST of Bhi11G000219 vs. TrEMBL
Match: tr|Q4ZH67|Q4ZH67_CUCSA (High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.5e-42
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKSAGASKXXXXXXXXXXXXXX ASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 113

[Close]

BLAST of Bhi11G000219 vs. TrEMBL
Match: tr|W9RKQ5|W9RKQ5_9ROSA (HMG1/2-like protein OS=Morus notabilis OX=981085 GN=L484_007074 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.5e-35
Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGA-SKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKE 60
           MKGGKSKAAP++TDTKLK+K+ GA  K               ASAFFVFMEEFR++YKKE
Sbjct: 1   MKGGKSKAAPRRTDTKLKAKAGGAGKKTAKNAGKDPNKPKRPASAFFVFMEEFREKYKKE 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           HPNNKSVAAVGKAGGDKWKSMSDAEKAP++ KAEKRK+EYNK+M AYNKR+AEG
Sbjct: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPFVAKAEKRKSEYNKNMLAYNKRLAEG 114

[Close]

BLAST of Bhi11G000219 vs. TrEMBL
Match: tr|A0A2P6RLB6|A0A2P6RLB6_ROSCH (Putative chromatin remodeling & transcriptional activation HMG family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0097191 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.7e-33
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MKGGKSK-AAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKE 60
           MKGGKS+ AAPK++DTKLK+KSAGASK               ASAFFVFMEEFR++YKKE
Sbjct: 1   MKGGKSRAAAPKRSDTKLKTKSAGASKPAKKAGKDPNKPKRPASAFFVFMEEFREKYKKE 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           HPNNKSVAAVGKAGG+KWKS+SDAEKAPY  KAEKRK EYNK+M  YNK+ AEG
Sbjct: 61  HPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 114

[Close]

BLAST of Bhi11G000219 vs. TrEMBL
Match: tr|M5VSB9|M5VSB9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G182700 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.6e-33
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 4   GKSK-AAPKKTDTKLKSKSAGASK-XXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEHP 63
           GKS+ AAPK+T+TKLK+KSAGASK                ASAFFVFME+FR++YKKEHP
Sbjct: 2   GKSRAAAPKRTETKLKTKSAGASKRTSKKAGKDPNKPKRPASAFFVFMEDFREKYKKEHP 61

Query: 64  NNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           NNKSVAAVGKAGGDKWKS+SDAEKAPY+ KAEKRKTEYNK+MQAYNK IAEG
Sbjct: 62  NNKSVAAVGKAGGDKWKSLSDAEKAPYVAKAEKRKTEYNKTMQAYNKSIAEG 113

[Close]

BLAST of Bhi11G000219 vs. NCBI nr
Match: NP_001267705.1 (HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-like protein [Cucumis melo] >AAY26151.1 high mobility group protein [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 3.7e-42
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKSAGASKXXXXXXXXXXXXXX ASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 113

[Close]

BLAST of Bhi11G000219 vs. NCBI nr
Match: XP_022145438.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 100/113 (88.50%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSKS GASK   XXXXX       ASAFFVFMEEFRKQYKKEH
Sbjct: 92  MKGGKSKAAPKKTDTKLKSKSVGASKKSAXXXXXPNKPKRPASAFFVFMEEFRKQYKKEH 151

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           PNNKSVAAVGKAGGDKWKSMS+AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG
Sbjct: 152 PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEG 204

[Close]

BLAST of Bhi11G000219 vs. NCBI nr
Match: XP_022923434.1 (HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cucurbita moschata] >XP_023007627.1 HMG1/2-like protein [Cucurbita maxima] >XP_023007628.1 HMG1/2-like protein [Cucurbita maxima] >XP_023552251.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 5.0e-39
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSK AGASK  XXXXXXXXXXX  ASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSXXXXXXXXXXXRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           PNNKSVAAVGKAGGDKWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEG
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEG 113

[Close]

BLAST of Bhi11G000219 vs. NCBI nr
Match: XP_022947889.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023539853.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 100/113 (88.50%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKK D+KLK+KSAGASK XXXXXXXXXXXXX ASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKXXXXXXXXXXXXXPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           PNNKSVAAVGKAGGDKW+S+SDAEKAPY++KAEK+KTEYNK+MQAYNK++AEG
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEG 113

[Close]

BLAST of Bhi11G000219 vs. NCBI nr
Match: XP_022971560.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 100/113 (88.50%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSAGASKXXXXXXXXXXXXXXXASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKK D+KLK+KSAGASK XXXXXXXXXXXXX ASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKXXXXXXXXXXXXXPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 114
           PNNKSVAAVGKAGGDKW+S+SDAEKAPY++KAEK+KTEYNK+MQAYNK++AEG
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEG 113

The following BLAST results are available for this feature:

BLAST of Bhi11G000219 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20693.1	1.7e-25	53.10	high mobility group B2	[more]
AT1G20696.2	5.0e-25	69.09	high mobility group B3	[more]
AT2G17560.1	1.4e-22	50.44	high mobility group B4	[more]
AT4G35570.1	8.1e-15	37.17	high mobility group B5	[more]
AT3G51880.2	4.4e-13	75.56	high mobility group B1	[more]

BLAST of Bhi11G000219 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P40619\|HMGL_IPONI	4.8e-25	60.55	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
sp\|P26585\|HMGL_SOYBN	4.8e-25	55.46	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|P93047\|HMGB3_ARATH	6.3e-25	69.03	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
sp\|O49596\|HMGB2_ARATH	3.1e-24	53.10	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
sp\|P40620\|HMGL_VICFA	1.7e-22	64.10	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of Bhi11G000219 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJR7\|A0A1S3BJR7_CUCME	2.5e-42	98.23	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=4 SV=1	[more]
tr\|Q4ZH67\|Q4ZH67_CUCSA	2.5e-42	98.23	High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
tr\|W9RKQ5\|W9RKQ5_9ROSA	8.5e-35	72.81	HMG1/2-like protein OS=Morus notabilis OX=981085 GN=L484_007074 PE=4 SV=1	[more]
tr\|A0A2P6RLB6\|A0A2P6RLB6_ROSCH	2.7e-33	71.93	Putative chromatin remodeling & transcriptional activation HMG family OS=Rosa ch...	[more]
tr\|M5VSB9\|M5VSB9_PRUPE	3.6e-33	74.11	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G182700 PE=4 SV=1	[more]

BLAST of Bhi11G000219 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001267705.1	3.7e-42	98.23	HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-lik...	[more]
XP_022145438.1	1.9e-41	88.50	HMG1/2-like protein [Momordica charantia]	[more]
XP_022923434.1	5.0e-39	89.38	HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cu...	[more]
XP_022947889.1	1.5e-38	88.50	HMG1/2-like protein [Cucurbita moschata] >XP_023539853.1 HMG1/2-like protein [Cu...	[more]
XP_022971560.1	1.5e-38	88.50	HMG1/2-like protein [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036910	HMG_box_dom_sf
IPR009071	HMG_box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000219	Bhi11M000219	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..146
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 1..145
None	No IPR available	PANTHER	PTHR13711:SF222	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..145
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 38..104 e-value: 2.60146E-16 score: 68.4233
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 37..108 e-value: 4.4E-27 score: 106.0
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 38..107 e-value: 2.3E-23 score: 82.3
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 38..107 score: 20.542
IPR036910	High mobility group box domain superfamily	GENE3D	G3DSA:1.10.30.10		coord: 31..109 e-value: 2.0E-27 score: 97.4
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	SSF47095	HMG-box	coord: 30..111

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi11G000219	Csa3G002290	Cucumber (Chinese Long) v2	cuwgoB226
Bhi11G000219	MELO3C013723	Melon (DHL92) v3.5.1	mewgoB507
Bhi11G000219	ClCG10G000260	Watermelon (Charleston Gray)	wcgwgoB081
Bhi11G000219	CSPI03G00280	Wild cucumber (PI 183967)	cpiwgoB226
Bhi11G000219	Cucsa.323100	Cucumber (Gy14) v1	cgywgoB644
Bhi11G000219	CmaCh06G001570	Cucurbita maxima (Rimu)	cmawgoB0991
Bhi11G000219	CmaCh16G012750	Cucurbita maxima (Rimu)	cmawgoB0422
Bhi11G000219	CmoCh06G001480	Cucurbita moschata (Rifu)	cmowgoB0987
Bhi11G000219	CmoCh16G013260	Cucurbita moschata (Rifu)	cmowgoB0416
Bhi11G000219	Lsi07G010550	Bottle gourd (USVL1VR-Ls)	lsiwgoB535
Bhi11G000219	Cp4.1LG14g10550	Cucurbita pepo (Zucchini)	cpewgoB0278
Bhi11G000219	Cp4.1LG08g12990	Cucurbita pepo (Zucchini)	cpewgoB1076
Bhi11G000219	CsGy3G000230	Cucumber (Gy14) v2	cgybwgoB218
Bhi11G000219	MELO3C013723.2	Melon (DHL92) v3.6.1	medwgoB500
Bhi11G000219	Carg19438	Silver-seed gourd	carwgoB0514
Bhi11G000219	Carg01178	Silver-seed gourd	carwgoB0198
Bhi11G000219	CsaV3_3G000290	Cucumber (Chinese Long) v3	cucwgoB231
Bhi11G000219	Cla008944	Watermelon (97103) v1	wgowmB026
Bhi11G000219	Cla97C10G184790	Watermelon (97103) v2	wgowmbB004

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None