Cla008491 (gene) Watermelon (97103) v1

Overview
NameCla008491
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 8683072 .. 8683452 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAAGTATGGTGGTCGCTATTGGGGGCAGCTATTCCAGCAGTCGTTGCAGGGCAAGCATACAGAATGAGGAGGAGGCATTCTGAGGAACAGAGAATAAAGACTGCAAGGGGAAGGGAGAAGAATTCAGATGAAATTTTTGTCTGTGAGAGGGTCTGCACATCAAAGAGAATGTTGAAAAAGGTAGGGTCTTTCTCGAAAGATCCGATTCCCGATACTTGCGTGACTGTCTGTGGACTATCTGAACTTGATGCCTGCACAGATGCATGTGCTCGCACCGTTTGTGTGAACCAGCATCAAGTACCAAACTGGAATGATGTTTGTCTTAGGAGATGCCAGAGTGAATGTCTTAAGCTTTCTGCTTCACATTCATCTTAG

mRNA sequence

ATGGTGGAAGTATGGTGGTCGCTATTGGGGGCAGCTATTCCAGCAGTCGTTGCAGGGCAAGCATACAGAATGAGGAGGAGGCATTCTGAGGAACAGAGAATAAAGACTGCAAGGGGAAGGGAGAAGAATTCAGATGAAATTTTTGTCTGTGAGAGGGTCTGCACATCAAAGAGAATGTTGAAAAAGGTAGGGTCTTTCTCGAAAGATCCGATTCCCGATACTTGCGTGACTGTCTGTGGACTATCTGAACTTGATGCCTGCACAGATGCATGTGCTCGCACCGTTTGTGTGAACCAGCATCAAGTACCAAACTGGAATGATGTTTGTCTTAGGAGATGCCAGAGTGAATGTCTTAAGCTTTCTGCTTCACATTCATCTTAG

Coding sequence (CDS)

ATGGTGGAAGTATGGTGGTCGCTATTGGGGGCAGCTATTCCAGCAGTCGTTGCAGGGCAAGCATACAGAATGAGGAGGAGGCATTCTGAGGAACAGAGAATAAAGACTGCAAGGGGAAGGGAGAAGAATTCAGATGAAATTTTTGTCTGTGAGAGGGTCTGCACATCAAAGAGAATGTTGAAAAAGGTAGGGTCTTTCTCGAAAGATCCGATTCCCGATACTTGCGTGACTGTCTGTGGACTATCTGAACTTGATGCCTGCACAGATGCATGTGCTCGCACCGTTTGTGTGAACCAGCATCAAGTACCAAACTGGAATGATGTTTGTCTTAGGAGATGCCAGAGTGAATGTCTTAAGCTTTCTGCTTCACATTCATCTTAG

Protein sequence

MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKLSASHSS
Homology
[Close]
BLAST of Cla008491 vs. Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.2e-62
Identity = 107/126 (84.92%), Postives = 121/126 (96.03%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSL+GAA+PA++AGQA+R+++RH EE+RIK+ARGREK+SDEIFVCERVCTSKRML
Sbjct: 1   MVEVWWSLIGAAVPALIAGQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVG+FSKDPIPDTCVTVCG+SELDAC+DACARTVCVNQHQV NWND+CLRRCQSECLKL
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120

Query: 121 SASHSS 127
           S+S SS
Sbjct: 121 SSSSSS 126

[Close]
BLAST of Cla008491 vs. TrEMBL
Match: A0A0A0KJ71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486990 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 5.7e-66
Identity = 121/126 (96.03%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSLLGAAIPAVVAGQ Y+M+RRHSEEQRIKTARGREKNSD+IFVCERVCTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVVAGQVYKMKRRHSEEQRIKTARGREKNSDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL
Sbjct: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120

Query: 121 SASHSS 127
           SAS+SS
Sbjct: 121 SASYSS 126

[Close]
BLAST of Cla008491 vs. TrEMBL
Match: A0A0J8C4P0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155120 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-62
Identity = 115/126 (91.27%), Postives = 122/126 (96.83%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSLLGAAIPAVVAGQA+R++RR  EEQRIKTARGREK+SD+IFVCERVCTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVVAGQAFRIKRRRDEEQRIKTARGREKSSDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVG+FSKDPIPDTCVTVCG+SELDACTDACARTVCVNQH VPNWNDVCLRRCQSECLKL
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWNDVCLRRCQSECLKL 120

Query: 121 SASHSS 127
           SAS SS
Sbjct: 121 SASRSS 126

[Close]
BLAST of Cla008491 vs. TrEMBL
Match: A0A0D2SQP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G245000 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.0e-62
Identity = 109/126 (86.51%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MV+ WWSLLGAAIPAV+AGQA+RM+++H+EE+RIK+ARGREK+SD+IFVCERVCTSKRML
Sbjct: 1   MVDAWWSLLGAAIPAVIAGQAFRMKKKHAEEERIKSARGREKSSDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVG+FSKDPIPDTCVTVCG+SELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECL+L
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 120

Query: 121 SASHSS 127
           SASHSS
Sbjct: 121 SASHSS 126

[Close]
BLAST of Cla008491 vs. TrEMBL
Match: A0A061DJX8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.4e-61
Identity = 111/126 (88.10%), Postives = 124/126 (98.41%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSLLGAAIPAV+AGQA+RM++R +EEQRIK+ARGREK+SD+IFVCERVCTSKRML
Sbjct: 40  MVEVWWSLLGAAIPAVIAGQAFRMKKRRAEEQRIKSARGREKSSDDIFVCERVCTSKRML 99

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVG+FSKDPI DTCVTVCG+SELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECL+L
Sbjct: 100 KKVGAFSKDPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 159

Query: 121 SASHSS 127
           SASHSS
Sbjct: 160 SASHSS 165

[Close]
BLAST of Cla008491 vs. TrEMBL
Match: A0A061DJ25_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.4e-61
Identity = 111/126 (88.10%), Postives = 124/126 (98.41%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSLLGAAIPAV+AGQA+RM++R +EEQRIK+ARGREK+SD+IFVCERVCTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVIAGQAFRMKKRRAEEQRIKSARGREKSSDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVG+FSKDPI DTCVTVCG+SELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECL+L
Sbjct: 61  KKVGAFSKDPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 120

Query: 121 SASHSS 127
           SASHSS
Sbjct: 121 SASHSS 126

[Close]
BLAST of Cla008491 vs. NCBI nr
Match: gi|449448416|ref|XP_004141962.1| (PREDICTED: uncharacterized protein At5g64816 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 8.2e-66
Identity = 121/126 (96.03%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSLLGAAIPAVVAGQ Y+M+RRHSEEQRIKTARGREKNSD+IFVCERVCTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVVAGQVYKMKRRHSEEQRIKTARGREKNSDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL
Sbjct: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120

Query: 121 SASHSS 127
           SAS+SS
Sbjct: 121 SASYSS 126

[Close]
BLAST of Cla008491 vs. NCBI nr
Match: gi|659079210|ref|XP_008440134.1| (PREDICTED: uncharacterized protein At5g64816 [Cucumis melo])

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-64
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSLLGAAIPAVVAGQ YRM+RRHSEEQRIK A GREKN D+IFVCERVCTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVVAGQVYRMKRRHSEEQRIKIAWGREKNPDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL
Sbjct: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120

Query: 121 SASHSS 127
           SASHSS
Sbjct: 121 SASHSS 126

[Close]
BLAST of Cla008491 vs. NCBI nr
Match: gi|731344273|ref|XP_010683322.1| (PREDICTED: uncharacterized protein At5g64816 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 246.1 bits (627), Expect = 3.2e-62
Identity = 115/126 (91.27%), Postives = 122/126 (96.83%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSLLGAAIPAVVAGQA+R++RR  EEQRIKTARGREK+SD+IFVCERVCTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAVVAGQAFRIKRRRDEEQRIKTARGREKSSDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVG+FSKDPIPDTCVTVCG+SELDACTDACARTVCVNQH VPNWNDVCLRRCQSECLKL
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWNDVCLRRCQSECLKL 120

Query: 121 SASHSS 127
           SAS SS
Sbjct: 121 SASRSS 126

[Close]
BLAST of Cla008491 vs. NCBI nr
Match: gi|697143982|ref|XP_009626114.1| (PREDICTED: uncharacterized protein At5g64816 [Nicotiana tomentosiformis])

HSP 1 Score: 246.1 bits (627), Expect = 3.2e-62
Identity = 113/126 (89.68%), Postives = 124/126 (98.41%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MVEVWWSLLGAAIPA+VAGQAYR+RR H+EEQRIK+ARGREK++D+IFVCERVCTSKRML
Sbjct: 1   MVEVWWSLLGAAIPAIVAGQAYRIRRNHAEEQRIKSARGREKSTDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVG+FSKDPIPDTCVTVCG+SELDAC+DACARTVCVNQHQVPNWNDVCLRRCQSECLKL
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120

Query: 121 SASHSS 127
           S+S SS
Sbjct: 121 SSSFSS 126

[Close]
BLAST of Cla008491 vs. NCBI nr
Match: gi|823194207|ref|XP_012492275.1| (PREDICTED: uncharacterized protein At5g64816 [Gossypium raimondii])

HSP 1 Score: 245.0 bits (624), Expect = 7.2e-62
Identity = 109/126 (86.51%), Postives = 125/126 (99.21%), Query Frame = 1 

Query: 1   MVEVWWSLLGAAIPAVVAGQAYRMRRRHSEEQRIKTARGREKNSDEIFVCERVCTSKRML 60
           MV+ WWSLLGAAIPAV+AGQA+RM+++H+EE+RIK+ARGREK+SD+IFVCERVCTSKRML
Sbjct: 1   MVDAWWSLLGAAIPAVIAGQAFRMKKKHAEEERIKSARGREKSSDDIFVCERVCTSKRML 60

Query: 61  KKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKL 120
           KKVG+FSKDPIPDTCVTVCG+SELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECL+L
Sbjct: 61  KKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 120

Query: 121 SASHSS 127
           SASHSS
Sbjct: 121 SASHSS 126

The following BLAST results are available for this feature:
BLAST of Cla008491 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y5486_ARATH3.2e-6284.92Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1[more]
BLAST of Cla008491 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ71_CUCSA5.7e-6696.03Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486990 PE=4 SV=1[more]
A0A0J8C4P0_BETVU2.2e-6291.27Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155120 PE=4 S... [more]
A0A0D2SQP1_GOSRA5.0e-6286.51Uncharacterized protein OS=Gossypium raimondii GN=B456_007G245000 PE=4 SV=1[more]
A0A061DJX8_THECC1.4e-6188.10Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1[more]
A0A061DJ25_THECC1.4e-6188.10Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1[more]
BLAST of Cla008491 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448416|ref|XP_004141962.1|8.2e-6696.03PREDICTED: uncharacterized protein At5g64816 [Cucumis sativus][more]
gi|659079210|ref|XP_008440134.1|1.2e-6495.24PREDICTED: uncharacterized protein At5g64816 [Cucumis melo][more]
gi|731344273|ref|XP_010683322.1|3.2e-6291.27PREDICTED: uncharacterized protein At5g64816 [Beta vulgaris subsp. vulgaris][more]
gi|697143982|ref|XP_009626114.1|3.2e-6289.68PREDICTED: uncharacterized protein At5g64816 [Nicotiana tomentosiformis][more]
gi|823194207|ref|XP_012492275.1|7.2e-6286.51PREDICTED: uncharacterized protein At5g64816 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU04939watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU30057watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008491Cla008491.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU30057WMU30057transcribed_cluster
WMU04939WMU04939transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35548FAMILY NOT NAMEDcoord: 2..126
score: 7.5
NoneNo IPR availablePANTHERPTHR35548:SF1SUBFAMILY NOT NAMEDcoord: 2..126
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla008491Cla97C01G015030Watermelon (97103) v2wmwmbB244
Cla008491Csa6G486990Cucumber (Chinese Long) v2cuwmB502
Cla008491MELO3C007474Melon (DHL92) v3.5.1mewmB573
Cla008491ClCG01G016040Watermelon (Charleston Gray)wcgwmB153
Cla008491CSPI06G27190Wild cucumber (PI 183967)cpiwmB521
Cla008491Cucsa.101550Cucumber (Gy14) v1cgywmB137
Cla008491CmaCh03G010440Cucurbita maxima (Rimu)cmawmB629
Cla008491CmoCh03G010430Cucurbita moschata (Rifu)cmowmB620
Cla008491Lsi01G010760Bottle gourd (USVL1VR-Ls)lsiwmB142
Cla008491MELO3C007474.2Melon (DHL92) v3.6.1medwmB562
Cla008491Carg00903Silver-seed gourdcarwmB0405
Cla008491CsaV3_6G042320Cucumber (Chinese Long) v3cucwmB527
Cla008491Bhi03G001111Wax gourdwgowmB433
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008491Watermelon (97103) v2wmwmbB259
Cla008491Wax gourdwgowmB373
Cla008491Watermelon (97103) v1wmwmB145
Cla008491Cucumber (Gy14) v1cgywmB469
Cla008491Cucurbita maxima (Rimu)cmawmB580
Cla008491Cucurbita maxima (Rimu)cmawmB824
Cla008491Cucurbita moschata (Rifu)cmowmB574
Cla008491Cucurbita moschata (Rifu)cmowmB814
Cla008491Watermelon (Charleston Gray)wcgwmB193
Cla008491Cucurbita pepo (Zucchini)cpewmB075
Cla008491Cucurbita pepo (Zucchini)cpewmB284
Cla008491Cucurbita pepo (Zucchini)cpewmB483
Cla008491Cucurbita pepo (Zucchini)cpewmB715
Cla008491Cucumber (Gy14) v2cgybwmB127
Cla008491Cucumber (Gy14) v2cgybwmB469
Cla008491Melon (DHL92) v3.6.1medwmB100
Cla008491Silver-seed gourdcarwmB0803
Cla008491Cucumber (Chinese Long) v3cucwmB148