Cla007864 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007864
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 10776751 .. 10778682 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTCTCTGTAAGTAATTTCCTCTCTCCTTTTTAACTTCTTCTTCTTCTTCTTCTTCTTCGTTTTTCTCTACTACTCATCTCTATTTGTTGATTTCATTTACATTTCTCCCTATTTTATTTAAGGTCTATTCAAACAGAAACAGTGGCCAAATCCACTTGCAGCACCACCAAATCCCAGTCTTCGGAGACTGGGATAAGGCAAAGGACTTGCCGATCACTCAGTATTTCGAAAGTGCTCGTCAGGCTGGTTTGATCCGCTACAGTTCCTCTTCCGGTGAAAGCGGCCCCTGCCTTCCTCCTTCCGACTTGTACTCCGCCGATCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGAAGAAACCTCCGCCGCTCGCCACCGCCGCGCGCAAGGTCTCTCTCTTTCTCTGAATCTCTGAATCTCTGATTGATAACCTTCCATCACAATGACGAATTGTGTCTCTCTGTTTCTTTCTTGTACTAATTTTAGAGTAAATCGGAGGAATGATTTAAGAGAAAATGAGGAATTTTCCGGGAAAATGAAGCGAAATTTTCTAAGGAACCAAACAGGGAATTAATTAGAGTTTTAAATTGAATTGAATCACGAAAATTGGGTTGGTGAAAGGAATGAAACGCGAAATGAATGAGGGATGATTTAGAATGATGAAAGACACGTGGCGGGATTTTGCAGGGACGGGTGAGGGAAAAGCGTTACCCGCATGTGGGATTAAAGGAACATCATCAGATTCCAATAAAGAAGCAGCAGATGCAACAAGGGAGGGTGTTCGACGTGACGGAAACGGGAGGAGCGCGAAAATTGAAGCAAAACGACGTGTCGATTCCGCGTCCTCCGCCTAGATCTAATGCTAGACCACCCAAACCTGTTGATGAAGATCTCTACAAAATCCCACCTGAGCTACTCCATTCTTCTAAGCGGGTATTTCCCTTCCTCCTTTTTCACATATTCTCATTTAACATCTCCACAAAACACGTTACTCAAAATTAATTAAGTATTTATTTTTATACTTTTAAATGTATTTCACACATCAAAATTACTTTTAATAGTTTTAAATAATTAAAAGTATATTTAAGACTATTTTAAATATGATAAAAAGTGATTTTAATTATTTTAAAAAATTGTAGAAAGTGGGAGATTTTTTTTTTTCAATTTATAAATAGTTGGTAAATTTGAATAGTGGTTAGTAGGTAAATTGATATTTACGTAAGAACTATCCTTTGAAGAGTAGTTGAAAACAGGGTCTTTTTTGGGTTGTAATCAAAGATATATTTCATAGTTTTATTTAATTTGTGTTGGATAATATATTTATAAGATGAAAACTATTAATTTACAAGGTTCTTGTCTGTAAAAATAAAAAATACAAGGTTCTTACCTTTTGTGTCTATTTAGTTCTAATTTATAAAAATTAAGTGTCAATTAAAGTTTTAGACTTTAAATTGTTTGTTTAATAAGTTTTTAGATTCTCTTTTGTGCTTAATAGTTTCCTCACAAATTAATTGCTCTATTCATATATATTTGAATTTTAAGTTTAATGGATTCTTAAATTTTTATTTTTTTTATTTAGTAGATCTATGATTTTTTTTTTTTTTGAAAACTAATATTTATAGTGGGAAAACATTAAAATTTTTGGTTTCAAAATTTTCACTTACTAAAAAATACACTCAAAAACGAAAAACGTTCCTCAAACTTATTTCCTACCAAACATGTTCTAAATTACAAGTGTAACCTTTTAAAATTTTCAAATATTTTGTTTATGTAACCTTTTAAAATTTTCAAATATTTTGTTTTAGCCCTTCTATGAACTCTTATTTTAGTTCTTGATATAGAAGCTGTTTGGAAGTATTTTAGATTAGTAATCTTGATGATGAGCAATTTGTTGTCAACCATGGGCCGACTTAG

mRNA sequence

ATGGAACTCTCTGGACGGGTGAGGGAAAAGCGTTACCCGCATGTGGGATTAAAGGAACATCATCAGATTCCAATAAAGAAGCAGCAGATGCAACAAGGGAGGGTGTTCGACGTGACGGAAACGGGAGGAGCGCGAAAATTGAAGCAAAACGACGTGTCGATTCCGCGTCCTCCGCCTAGATCTAATGCTAGACCACCCAAACCTGTTGATGAAGATCTCTACAAAATCCCACCTGAGCTACTCCATTCTTCTAAGCGGATTAGTAATCTTGATGATGAGCAATTTGTTGTCAACCATGGGCCGACTTAG

Coding sequence (CDS)

ATGGAACTCTCTGGACGGGTGAGGGAAAAGCGTTACCCGCATGTGGGATTAAAGGAACATCATCAGATTCCAATAAAGAAGCAGCAGATGCAACAAGGGAGGGTGTTCGACGTGACGGAAACGGGAGGAGCGCGAAAATTGAAGCAAAACGACGTGTCGATTCCGCGTCCTCCGCCTAGATCTAATGCTAGACCACCCAAACCTGTTGATGAAGATCTCTACAAAATCCCACCTGAGCTACTCCATTCTTCTAAGCGGATTAGTAATCTTGATGATGAGCAATTTGTTGTCAACCATGGGCCGACTTAG

Protein sequence

MELSGRVREKRYPHVGLKEHHQIPIKKQQMQQGRVFDVTETGGARKLKQNDVSIPRPPPRSNARPPKPVDEDLYKIPPELLHSSKRISNLDDEQFVVNHGPT

Homology

[Close]

BLAST of Cla007864 vs. TrEMBL
Match: A0A0A0LKP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G082200 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.3e-32
Identity = 77/88 (87.50%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 5   GRVREKRYPHVGLKEHHQIPIKKQQM----QQGRVFDVTETGGARKLKQNDV-SIPRPPP 64
           GRVREKRYPHVGLKEHHQIPIKKQQM    Q GRVFDVTETGGARKLKQNDV SI RPPP
Sbjct: 84  GRVREKRYPHVGLKEHHQIPIKKQQMMMMQQGGRVFDVTETGGARKLKQNDVSSISRPPP 143

Query: 65  RSNARP-PKPVDEDLYKIPPELLHSSKR 87
           RSN    PKPVDEDLYKIPPELLHSSKR
Sbjct: 144 RSNLTTIPKPVDEDLYKIPPELLHSSKR 171

[Close]

BLAST of Cla007864 vs. TrEMBL
Match: M5WK59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012256mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 8   REKRYPHVGLKEHHQIPIKKQQMQQGRVFDVTE---------TGGARKLKQNDVSIPRPP 67
           REKR    G + H    + +Q+ QQ +V DVT+            + + + ND ++PR P
Sbjct: 83  REKR----GQRAH----VMEQKKQQAKVCDVTQPPTKHYEYQVQQSNRTRSND-AVPRVP 142

Query: 68  PRSNARPPKPVDEDLYKIPPELLHSSKR 87
           PR   RPPKPVDEDLYKIPPELLH +KR
Sbjct: 143 PRFPTRPPKPVDEDLYKIPPELLHKNKR 161

[Close]

BLAST of Cla007864 vs. TrEMBL
Match: W9SA74_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006469 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 8   REKRYPHVGLKEHHQIPIKKQQMQQGRVFDVTETGGARKLKQNDVSIPRPPPRSNARP-- 67
           REKR PHV  KE      +K+Q QQ +V DVTE    RK  +N+         + A P  
Sbjct: 91  REKRCPHV--KE------QKKQQQQAKVCDVTEP--QRKPLRNEAVSRTAGSGAGAPPHR 150

Query: 68  -PKPVDEDLYKIPPELLHSSKRIS 89
            PKPVDEDLYKIPPELLH+SKR++
Sbjct: 151 LPKPVDEDLYKIPPELLHASKRVA 164

[Close]

BLAST of Cla007864 vs. TrEMBL
Match: A0A067JIK6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23609 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-08
Identity = 39/88 (44.32%), Postives = 48/88 (54.55%), Query Frame = 1


Query: 6   RVREKRYPHVGLKEHHQIPIKKQQMQQGRVFDVTETGGARKLK-------QNDVSIPRPP 65
           R RE+R P V           K+Q + G+V DVTE    + +        +ND  +P P 
Sbjct: 79  RGRERRVPRV-----------KEQKKLGKVCDVTEPPRKQHMSMYTVSHGKNDNDVPHPR 138

Query: 66  PRSNARPPKPVDEDLYKIPPELLHSSKR 87
           P+   RP K VDEDLYKIPPELLHS KR
Sbjct: 139 PKLPTRPTKAVDEDLYKIPPELLHSYKR 155

[Close]

BLAST of Cla007864 vs. TrEMBL
Match: D7TDU8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0043g00850 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-08
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 27  KQQMQQGRVFDVTETGGARKLKQNDVSIPRPP-PRSNARPPKPVDEDLYKIPPELLHSSK 86
           K+Q +QGRV DV      ++      S  +PP P   ARPPK VDEDLYKIPP+LLHSSK
Sbjct: 79  KEQKKQGRVCDVVAAPPRKQASAKQRSKQQPPAPTKAARPPKAVDEDLYKIPPDLLHSSK 138

[Close]

BLAST of Cla007864 vs. NCBI nr
Match: gi|659082375|ref|XP_008441806.1| (PREDICTED: uncharacterized protein LOC103485859 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 77/88 (87.50%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 5   GRVREKRYPHVGLKEHHQIPIKKQQM----QQGRVFDVTETGGARKLKQNDV-SIPRPPP 64
           GRVREKRYPHVGLKEHHQIPIKKQQM    Q GRVFDVTETGGARKLKQND+ SIPRPPP
Sbjct: 84  GRVREKRYPHVGLKEHHQIPIKKQQMMMMQQGGRVFDVTETGGARKLKQNDLSSIPRPPP 143

Query: 65  RSNARP-PKPVDEDLYKIPPELLHSSKR 87
           RSN    PKPVDEDLYKIPPELLHSSKR
Sbjct: 144 RSNLTTIPKPVDEDLYKIPPELLHSSKR 171

[Close]

BLAST of Cla007864 vs. NCBI nr
Match: gi|778668019|ref|XP_011649025.1| (PREDICTED: uncharacterized protein LOC101218053 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 4.8e-32
Identity = 77/88 (87.50%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 5   GRVREKRYPHVGLKEHHQIPIKKQQM----QQGRVFDVTETGGARKLKQNDV-SIPRPPP 64
           GRVREKRYPHVGLKEHHQIPIKKQQM    Q GRVFDVTETGGARKLKQNDV SI RPPP
Sbjct: 84  GRVREKRYPHVGLKEHHQIPIKKQQMMMMQQGGRVFDVTETGGARKLKQNDVSSISRPPP 143

Query: 65  RSNARP-PKPVDEDLYKIPPELLHSSKR 87
           RSN    PKPVDEDLYKIPPELLHSSKR
Sbjct: 144 RSNLTTIPKPVDEDLYKIPPELLHSSKR 171

[Close]

BLAST of Cla007864 vs. NCBI nr
Match: gi|645222916|ref|XP_008218383.1| (PREDICTED: uncharacterized protein LOC103318739 isoform X2 [Prunus mume])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 8   REKRYPHVGLKEHH--QIPIKKQQMQQGRVFDVTE---------TGGARKLKQNDVSIPR 67
           R++  P VG +E    +  + +Q+ QQ +V DVT+            + + + ND ++PR
Sbjct: 71  RKQAAPRVGTREKRGPRAHVMEQKKQQAKVCDVTQPPTKHYEYHVQQSNRTRSND-AVPR 130

Query: 68  PPPRSNARPPKPVDEDLYKIPPELLHSSKRI 88
             PR   RPPKPVDEDLYKIPPELLH +KR+
Sbjct: 131 VTPRFPTRPPKPVDEDLYKIPPELLHKTKRV 160

[Close]

BLAST of Cla007864 vs. NCBI nr
Match: gi|645222914|ref|XP_008218382.1| (PREDICTED: uncharacterized protein LOC103318739 isoform X1 [Prunus mume])

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 8   REKRYPHVGLKEHH--QIPIKKQQMQQGRVFDVTE---------TGGARKLKQNDVSIPR 67
           +++  P VG +E    +  + +Q+ QQ +V DVT+            + + + ND ++PR
Sbjct: 71  KQQAAPRVGTREKRGPRAHVMEQKKQQAKVCDVTQPPTKHYEYHVQQSNRTRSND-AVPR 130

Query: 68  PPPRSNARPPKPVDEDLYKIPPELLHSSKRI 88
             PR   RPPKPVDEDLYKIPPELLH +KR+
Sbjct: 131 VTPRFPTRPPKPVDEDLYKIPPELLHKTKRV 160

[Close]

BLAST of Cla007864 vs. NCBI nr
Match: gi|595830078|ref|XP_007205996.1| (hypothetical protein PRUPE_ppa012256mg [Prunus persica])

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-09
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 8   REKRYPHVGLKEHHQIPIKKQQMQQGRVFDVTE---------TGGARKLKQNDVSIPRPP 67
           REKR    G + H    + +Q+ QQ +V DVT+            + + + ND ++PR P
Sbjct: 83  REKR----GQRAH----VMEQKKQQAKVCDVTQPPTKHYEYQVQQSNRTRSND-AVPRVP 142

Query: 68  PRSNARPPKPVDEDLYKIPPELLHSSKR 87
           PR   RPPKPVDEDLYKIPPELLH +KR
Sbjct: 143 PRFPTRPPKPVDEDLYKIPPELLHKNKR 161

The following BLAST results are available for this feature:

BLAST of Cla007864 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKP3_CUCSA	3.3e-32	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G082200 PE=4 SV=1	[more]
M5WK59_PRUPE	2.3e-09	46.59	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012256mg PE=4 SV=1	[more]
W9SA74_9ROSA	3.4e-08	51.19	Uncharacterized protein OS=Morus notabilis GN=L484_006469 PE=4 SV=1	[more]
A0A067JIK6_JATCU	4.4e-08	44.32	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23609 PE=4 SV=1	[more]
D7TDU8_VITVI	5.7e-08	55.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0043g00850 PE=4 SV=...	[more]

BLAST of Cla007864 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082375\|ref\|XP_008441806.1\|	1.3e-32	87.50	PREDICTED: uncharacterized protein LOC103485859 [Cucumis melo]	[more]
gi\|778668019\|ref\|XP_011649025.1\|	4.8e-32	87.50	PREDICTED: uncharacterized protein LOC101218053 [Cucumis sativus]	[more]
gi\|645222916\|ref\|XP_008218383.1\|	1.5e-09	42.86	PREDICTED: uncharacterized protein LOC103318739 isoform X2 [Prunus mume]	[more]
gi\|645222914\|ref\|XP_008218382.1\|	2.6e-09	41.76	PREDICTED: uncharacterized protein LOC103318739 isoform X1 [Prunus mume]	[more]
gi\|595830078\|ref\|XP_007205996.1\|	3.3e-09	46.59	hypothetical protein PRUPE_ppa012256mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU33013	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU55604	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007864	Cla007864.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU33013	WMU33013	transcribed_cluster
WMU55604	WMU55604	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33699	FAMILY NOT NAMED	coord: 26..86 score: 7.5
None	No IPR available	PANTHER	PTHR33699:SF3	SUBFAMILY NOT NAMED	coord: 26..86 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007864	Csa2G082200	Cucumber (Chinese Long) v2	cuwmB156
Cla007864	MELO3C008671	Melon (DHL92) v3.5.1	mewmB423
Cla007864	ClCG11G010190	Watermelon (Charleston Gray)	wcgwmB109
Cla007864	CSPI02G07760	Wild cucumber (PI 183967)	cpiwmB158
Cla007864	Cucsa.178090	Cucumber (Gy14) v1	cgywmB342
Cla007864	CmaCh05G007780	Cucurbita maxima (Rimu)	cmawmB767
Cla007864	CmaCh12G009850	Cucurbita maxima (Rimu)	cmawmB173
Cla007864	CmoCh05G008330	Cucurbita moschata (Rifu)	cmowmB760
Cla007864	CmoCh12G009930	Cucurbita moschata (Rifu)	cmowmB160
Cla007864	Lsi11G009170	Bottle gourd (USVL1VR-Ls)	lsiwmB110
Cla007864	Cp4.1LG07g08220	Cucurbita pepo (Zucchini)	cpewmB811
Cla007864	CsGy2G008010	Cucumber (Gy14) v2	cgybwmB148
Cla007864	MELO3C008671.2	Melon (DHL92) v3.6.1	medwmB413
Cla007864	Carg23468	Silver-seed gourd	carwmB0478
Cla007864	CsaV3_2G010180	Cucumber (Chinese Long) v3	cucwmB167
Cla007864	Bhi06G000912	Wax gourd	wgowmB148

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None