Cla007582 (gene) Watermelon (97103) v1

Overview
NameCla007582
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPathogen induced 4 protein (AHRD V1 ***- A0MCW3_CUCSA)
LocationChr6 : 7868464 .. 7868730 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAAAAAGTATTTGGTTATTCTTGTTCTTGGAGTGATTCTTCTTAGCACTCAAGTAATTGCTCGACCTTATTACCAGCCAGAGACCCACCACAAACTCACTCCCTCCGCCACCGTCTCATCGGCGGTCGGGGACTCTTTGCAAAAGATTCCACCTTGGTTGAGGAAAATTTTTCCCAAAAAACCTCCCAAACTCCCAAATATCAACTTGCCACCACCACCACCGCCGCGGGTTCGCAGACCAAAACCACCTTCTTCCAACTGA

mRNA sequence

ATGTCTAAAAAGTATTTGGTTATTCTTGTTCTTGGAGTGATTCTTCTTAGCACTCAAGTAATTGCTCGACCTTATTACCAGCCAGAGACCCACCACAAACTCACTCCCTCCGCCACCGTCTCATCGGCGGTCGGGGACTCTTTGCAAAAGATTCCACCTTGGTTGAGGAAAATTTTTCCCAAAAAACCTCCCAAACTCCCAAATATCAACTTGCCACCACCACCACCGCCGCGGGTTCGCAGACCAAAACCACCTTCTTCCAACTGA

Coding sequence (CDS)

ATGTCTAAAAAGTATTTGGTTATTCTTGTTCTTGGAGTGATTCTTCTTAGCACTCAAGTAATTGCTCGACCTTATTACCAGCCAGAGACCCACCACAAACTCACTCCCTCCGCCACCGTCTCATCGGCGGTCGGGGACTCTTTGCAAAAGATTCCACCTTGGTTGAGGAAAATTTTTCCCAAAAAACCTCCCAAACTCCCAAATATCAACTTGCCACCACCACCACCGCCGCGGGTTCGCAGACCAAAACCACCTTCTTCCAACTGA

Protein sequence

MSKKYLVILVLGVILLSTQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIFPKKPPKLPNINLPPPPPPRVRRPKPPSSN
Homology
[Close]
BLAST of Cla007582 vs. TrEMBL
Match: A0MCW3_CUCSA (Pathogen induced 4 protein OS=Cucumis sativus GN=pi4 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 1 

Query: 1  MSKKYLVILVLGVILLSTQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIFP 60
          MS K+LVIL+LGVILLSTQVIARPYY  E HH+LTPSATV SAVG+SLQK+PPWL+KIFP
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP 60

Query: 61 KKPPKLPNINLPPPPPPRVRRPKPPSSN 89
          KKPPK          PPR RR KPPSSN
Sbjct: 61 KKPPKSTCHLHRRRDPPR-RRLKPPSSN 87

[Close]
BLAST of Cla007582 vs. TrEMBL
Match: A0A0A0LKM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176180 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 1 

Query: 1  MSKKYLVILVL-GVILLSTQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIF 60
          MS+KYLVIL+L GVILLSTQV+ARPYY  E HHKLTPSATVS+A     + + P+ +K F
Sbjct: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAY---WKVVIPFFKKHF 60

Query: 61 --------PKKPPKLPNIN----LPPPPPPR-VRRPKPPSSN 89
                  PKK PK P +      PPPPPPR VR  +PPSSN
Sbjct: 61 HKKSPKKSPKKSPKFPKVKSPPPSPPPPPPRPVRSWRPPSSN 99

[Close]
BLAST of Cla007582 vs. NCBI nr
Match: gi|94450551|gb|ABF19725.1| (pathogen induced 4 protein [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 1 

Query: 1  MSKKYLVILVLGVILLSTQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIFP 60
          MS K+LVIL+LGVILLSTQVIARPYY  E HH+LTPSATV SAVG+SLQK+PPWL+KIFP
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP 60

Query: 61 KKPPKLPNINLPPPPPPRVRRPKPPSSN 89
          KKPPK          PPR RR KPPSSN
Sbjct: 61 KKPPKSTCHLHRRRDPPR-RRLKPPSSN 87

[Close]
BLAST of Cla007582 vs. NCBI nr
Match: gi|700206485|gb|KGN61604.1| (hypothetical protein Csa_2G176180 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 1 

Query: 1  MSKKYLVILVL-GVILLSTQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIF 60
          MS+KYLVIL+L GVILLSTQV+ARPYY  E HHKLTPSATVS+A     + + P+ +K F
Sbjct: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAY---WKVVIPFFKKHF 60

Query: 61 --------PKKPPKLPNIN----LPPPPPPR-VRRPKPPSSN 89
                  PKK PK P +      PPPPPPR VR  +PPSSN
Sbjct: 61 HKKSPKKSPKKSPKFPKVKSPPPSPPPPPPRPVRSWRPPSSN 99

The following BLAST results are available for this feature:
BLAST of Cla007582 vs. TrEMBL
Match NameE-valueIdentityDescription
A0MCW3_CUCSA1.2e-2573.86Pathogen induced 4 protein OS=Cucumis sativus GN=pi4 PE=2 SV=1[more]
A0A0A0LKM8_CUCSA1.2e-1757.84Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176180 PE=4 SV=1[more]
BLAST of Cla007582 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|94450551|gb|ABF19725.1|1.7e-2573.86pathogen induced 4 protein [Cucumis sativus][more]
gi|700206485|gb|KGN61604.1|1.7e-1757.84hypothetical protein Csa_2G176180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU08836watermelon EST collection version 2.0transcribed_cluster
WMU40124watermelon EST collection version 2.0transcribed_cluster
WMU42738watermelon EST collection version 2.0transcribed_cluster
WMU49712watermelon EST collection version 2.0transcribed_cluster
WMU53045watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007582Cla007582.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU42738WMU42738transcribed_cluster
WMU08836WMU08836transcribed_cluster
WMU40124WMU40124transcribed_cluster
WMU53045WMU53045transcribed_cluster
WMU49712WMU49712transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla007582Cla97C06G116580Watermelon (97103) v2wmwmbB406
Cla007582Cucsa.383660Cucumber (Gy14) v1cgywmB691
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla007582Cucumber (Gy14) v2cgybwmB163
Cla007582Cucumber (Gy14) v2cgybwmB262
Cla007582Melon (DHL92) v3.6.1medwmB418
Cla007582Melon (DHL92) v3.6.1medwmB474
Cla007582Silver-seed gourdcarwmB0219
Cla007582Silver-seed gourdcarwmB0224
Cla007582Silver-seed gourdcarwmB0753
Cla007582Silver-seed gourdcarwmB0785
Cla007582Silver-seed gourdcarwmB0962
Cla007582Silver-seed gourdcarwmB1077
Cla007582Cucumber (Chinese Long) v3cucwmB184
Cla007582Cucumber (Chinese Long) v3cucwmB288
Cla007582Cucumber (Chinese Long) v3cucwmB292
Cla007582Watermelon (97103) v2wmwmbB402
Cla007582Watermelon (97103) v2wmwmbB413
Cla007582Wax gourdwgowmB104
Cla007582Wax gourdwgowmB239
Cla007582Wax gourdwgowmB288
Cla007582Watermelon (97103) v1wmwmB116
Cla007582Watermelon (97103) v1wmwmB138
Cla007582Cucumber (Gy14) v1cgywmB483
Cla007582Cucurbita maxima (Rimu)cmawmB250
Cla007582Cucurbita maxima (Rimu)cmawmB358
Cla007582Cucurbita maxima (Rimu)cmawmB507
Cla007582Cucurbita maxima (Rimu)cmawmB611
Cla007582Cucurbita maxima (Rimu)cmawmB811
Cla007582Cucurbita maxima (Rimu)cmawmB878
Cla007582Cucurbita moschata (Rifu)cmowmB239
Cla007582Cucurbita moschata (Rifu)cmowmB353
Cla007582Cucurbita moschata (Rifu)cmowmB500
Cla007582Cucurbita moschata (Rifu)cmowmB604
Cla007582Cucurbita moschata (Rifu)cmowmB802
Cla007582Cucurbita moschata (Rifu)cmowmB867
Cla007582Melon (DHL92) v3.5.1mewmB486
Cla007582Melon (DHL92) v3.5.1mewmB430
Cla007582Watermelon (Charleston Gray)wcgwmB311
Cla007582Watermelon (Charleston Gray)wcgwmB344
Cla007582Watermelon (Charleston Gray)wcgwmB395
Cla007582Cucumber (Chinese Long) v2cuwmB172
Cla007582Cucumber (Chinese Long) v2cuwmB279
Cla007582Cucumber (Chinese Long) v2cuwmB282
Cla007582Cucurbita pepo (Zucchini)cpewmB161
Cla007582Cucurbita pepo (Zucchini)cpewmB271
Cla007582Cucurbita pepo (Zucchini)cpewmB334
Cla007582Cucurbita pepo (Zucchini)cpewmB622
Cla007582Cucurbita pepo (Zucchini)cpewmB752
Cla007582Cucurbita pepo (Zucchini)cpewmB853
Cla007582Bottle gourd (USVL1VR-Ls)lsiwmB040
Cla007582Bottle gourd (USVL1VR-Ls)lsiwmB382
Cla007582Bottle gourd (USVL1VR-Ls)lsiwmB383