Cucsa.383660 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.383660
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPathogen induced 4 protein
Locationscaffold03882 : 690230 .. 690868 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAAATCCAGAAAATAAAGAGTCACAAAATGTCTCATAAACATTTGGTTATTCTTCTTCTTGGAGTGATTCTTCTTAGCACCCAAGTGATTGCCCGGCCTTATTACTTGTCGGAGAACCACCACAGACTGACTCCCTCCGCCACCGTCCCATCGGCAGTCGGGGAATCTTTGCAAAAACTCCCACCATGGTTGAAGAAAATTTTTCCCAAAAAGCCTCCCAAAATCCCAAAAATCAACTTGCCACCTCCACCGCCGCCGCGACGCAGACTGAAACCGCCTTCTTCCAACTGATCAATGCTAAAAAGTTGTAGTGATTTGAAGGTGTTTAATAAATCAGCACCGCACCATCACTGTGGTGTGTGCTCTCTCTCAACTCTCAAGCTTAATTAGATGAATGATTATTGGAAGTTTATTTTTAAGTAATATGTTTTTCTAATATTAGTACAATCTAATTAAGTACATGTCTCATGTACTGTGGGACCATTTCTCTCTTTTTCAAATAATAAATGGAAGGCAAGTGCTTGAGTAGTCAATCTCAAAGATGGTGTGTTGTCGTCCTTTGTTATATAATATAAATTGAAAGAATATGATTGTACTGTTTATGATTTGATGAACTTATTTATAAATATATCAAAA

mRNA sequence

AAACAAATCCAGAAAATAAAGAGTCACAAAATGTCTCATAAACATTTGGTTATTCTTCTTCTTGGAGTGATTCTTCTTAGCACCCAAGTGATTGCCCGGCCTTATTACTTGTCGGAGAACCACCACAGACTGACTCCCTCCGCCACCGTCCCATCGGCAGTCGGGGAATCTTTGCAAAAACTCCCACCATGGTTGAAGAAAATTTTTCCCAAAAAGCCTCCCAAAATCCCAAAAATCAACTTGCCACCTCCACCGCCGCCGCGACGCAGACTGAAACCGCCTTCTTCCAACTGATCAATGCTAAAAAGTTGTAGTGATTTGAAGGTGTTTAATAAATCAGCACCGCACCATCACTGTGGTGTGTGCTCTCTCTCAACTCTCAAGCTTAATTAGATGAATGATTATTGGAAGTTTATTTTTAAGTAATATGTTTTTCTAATATTAGTACAATCTAATTAAGTACATGTCTCATGTACTGTGGGACCATTTCTCTCTTTTTCAAATAATAAATGGAAGGCAAGTGCTTGAGTAGTCAATCTCAAAGATGGTGTGTTGTCGTCCTTTGTTATATAATATAAATTGAAAGAATATGATTGTACTGTTTATGATTTGATGAACTTATTTATAAATATATCAAAA

Coding sequence (CDS)

ATGTCTCATAAACATTTGGTTATTCTTCTTCTTGGAGTGATTCTTCTTAGCACCCAAGTGATTGCCCGGCCTTATTACTTGTCGGAGAACCACCACAGACTGACTCCCTCCGCCACCGTCCCATCGGCAGTCGGGGAATCTTTGCAAAAACTCCCACCATGGTTGAAGAAAATTTTTCCCAAAAAGCCTCCCAAAATCCCAAAAATCAACTTGCCACCTCCACCGCCGCCGCGACGCAGACTGAAACCGCCTTCTTCCAACTGA

Protein sequence

MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFPKKPPKIPKINLPPPPPPRRRLKPPSSN*
Homology
[Close]
BLAST of Cucsa.383660 vs. TrEMBL
Match: A0MCW3_CUCSA (Pathogen induced 4 protein OS=Cucumis sativus GN=pi4 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.0e-34
Identity = 77/87 (88.51%), Postives = 77/87 (88.51%), Query Frame = 1 

Query: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP 60
          MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP 60

Query: 61 KKPPKIPKINLPPPPPPRRRLKPPSSN 88
          KKPPK          PPRRRLKPPSSN
Sbjct: 61 KKPPKSTCHLHRRRDPPRRRLKPPSSN 87

[Close]
BLAST of Cucsa.383660 vs. TrEMBL
Match: A0A0A0LKM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176180 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 61/102 (59.80%), Postives = 70/102 (68.63%), Query Frame = 1 

Query: 1  MSHKHLVILLL-GVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIF 60
          MS K+LVILLL GVILLSTQV+ARPYYLSENHH+LTPSATV +A     + + P+ KK F
Sbjct: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAY---WKVVIPFFKKHF 60

Query: 61 --------PKKPPKIPKIN----LPPPPPPR--RRLKPPSSN 88
                  PKK PK PK+      PPPPPPR  R  +PPSSN
Sbjct: 61 HKKSPKKSPKKSPKFPKVKSPPPSPPPPPPRPVRSWRPPSSN 99

[Close]
BLAST of Cucsa.383660 vs. NCBI nr
Match: gi|94450551|gb|ABF19725.1| (pathogen induced 4 protein [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.8e-34
Identity = 77/87 (88.51%), Postives = 77/87 (88.51%), Query Frame = 1 

Query: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP 60
          MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP 60

Query: 61 KKPPKIPKINLPPPPPPRRRLKPPSSN 88
          KKPPK          PPRRRLKPPSSN
Sbjct: 61 KKPPKSTCHLHRRRDPPRRRLKPPSSN 87

[Close]
BLAST of Cucsa.383660 vs. NCBI nr
Match: gi|700206485|gb|KGN61604.1| (hypothetical protein Csa_2G176180 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 61/102 (59.80%), Postives = 70/102 (68.63%), Query Frame = 1 

Query: 1  MSHKHLVILLL-GVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIF 60
          MS K+LVILLL GVILLSTQV+ARPYYLSENHH+LTPSATV +A     + + P+ KK F
Sbjct: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAY---WKVVIPFFKKHF 60

Query: 61 --------PKKPPKIPKIN----LPPPPPPR--RRLKPPSSN 88
                  PKK PK PK+      PPPPPPR  R  +PPSSN
Sbjct: 61 HKKSPKKSPKKSPKFPKVKSPPPSPPPPPPRPVRSWRPPSSN 99

The following BLAST results are available for this feature:
BLAST of Cucsa.383660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0MCW3_CUCSA4.0e-3488.51Pathogen induced 4 protein OS=Cucumis sativus GN=pi4 PE=2 SV=1[more]
A0A0A0LKM8_CUCSA1.1e-1859.80Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176180 PE=4 SV=1[more]
BLAST of Cucsa.383660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|94450551|gb|ABF19725.1|5.8e-3488.51pathogen induced 4 protein [Cucumis sativus][more]
gi|700206485|gb|KGN61604.1|1.5e-1859.80hypothetical protein Csa_2G176180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.383660.1Cucsa.383660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.383660Cla007582Watermelon (97103) v1cgywmB691
Cucsa.383660MELO3C022989Melon (DHL92) v3.5.1cgymeB624
Cucsa.383660MELO3C022989.2Melon (DHL92) v3.6.1cgymedB620
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.383660Cucumber (Chinese Long) v3cgycucB581
Cucsa.383660Cucumber (Chinese Long) v3cgycucB582
Cucsa.383660Watermelon (97103) v2cgywmbB659
Cucsa.383660Watermelon (97103) v2cgywmbB657
Cucsa.383660Watermelon (97103) v2cgywmbB658
Cucsa.383660Wax gourdcgywgoB765
Cucsa.383660Wax gourdcgywgoB762
Cucsa.383660Cucumber (Gy14) v1cgycgyB133
Cucsa.383660Cucurbita maxima (Rimu)cgycmaB1054
Cucsa.383660Cucurbita maxima (Rimu)cgycmaB1055
Cucsa.383660Cucurbita maxima (Rimu)cgycmaB1056
Cucsa.383660Cucurbita maxima (Rimu)cgycmaB1057
Cucsa.383660Cucurbita maxima (Rimu)cgycmaB1058
Cucsa.383660Cucurbita maxima (Rimu)cgycmaB1059
Cucsa.383660Cucurbita moschata (Rifu)cgycmoB1054
Cucsa.383660Cucurbita moschata (Rifu)cgycmoB1055
Cucsa.383660Cucurbita moschata (Rifu)cgycmoB1056
Cucsa.383660Cucurbita moschata (Rifu)cgycmoB1057
Cucsa.383660Cucurbita moschata (Rifu)cgycmoB1058
Cucsa.383660Cucurbita moschata (Rifu)cgycmoB1059
Cucsa.383660Wild cucumber (PI 183967)cgycpiB565
Cucsa.383660Wild cucumber (PI 183967)cgycpiB566
Cucsa.383660Cucumber (Chinese Long) v2cgycuB536
Cucsa.383660Cucumber (Chinese Long) v2cgycuB537
Cucsa.383660Melon (DHL92) v3.5.1cgymeB625
Cucsa.383660Watermelon (Charleston Gray)cgywcgB653
Cucsa.383660Watermelon (Charleston Gray)cgywcgB654
Cucsa.383660Watermelon (Charleston Gray)cgywcgB655
Cucsa.383660Watermelon (97103) v1cgywmB689
Cucsa.383660Watermelon (97103) v1cgywmB690
Cucsa.383660Cucurbita pepo (Zucchini)cgycpeB1007
Cucsa.383660Cucurbita pepo (Zucchini)cgycpeB1008
Cucsa.383660Cucurbita pepo (Zucchini)cgycpeB1009
Cucsa.383660Cucurbita pepo (Zucchini)cgycpeB1010
Cucsa.383660Cucurbita pepo (Zucchini)cgycpeB1011
Cucsa.383660Cucurbita pepo (Zucchini)cgycpeB1012
Cucsa.383660Bottle gourd (USVL1VR-Ls)cgylsiB619
Cucsa.383660Bottle gourd (USVL1VR-Ls)cgylsiB620
Cucsa.383660Bottle gourd (USVL1VR-Ls)cgylsiB621
Cucsa.383660Melon (DHL92) v3.6.1cgymedB621
Cucsa.383660Silver-seed gourdcarcgyB0273
Cucsa.383660Silver-seed gourdcarcgyB0277
Cucsa.383660Silver-seed gourdcarcgyB0849
Cucsa.383660Silver-seed gourdcarcgyB0892
Cucsa.383660Silver-seed gourdcarcgyB1080
Cucsa.383660Silver-seed gourdcarcgyB1195