Cla97C06G116580 (gene) Watermelon (97103) v2

Overview
NameCla97C06G116580
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPathogen induced 4 protein
LocationCla97Chr06 : 7869239 .. 7869505 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAAAAAGTATTTGGTTATTCTTGTTCTTGGAGTGATTCTTCTTAGCACTCAAGTAATTGCTCGACCTTATTACCAGCCAGAGACCCACCACAAACTCACTCCCTCCGCCACCGTCTCATCGGCGGTCGGGGACTCTTTGCAAAAGATTCCACCTTGGTTGAGGAAAATTTTTCCCAAAAAACCTCCCAAACTCCCAAATATCAACTTGCCACCACCACCACCGCCGCGGGTTCGCAGACCAAAACCACCTTCTTCCAACTGA

mRNA sequence

ATGTCTAAAAAGTATTTGGTTATTCTTGTTCTTGGAGTGATTCTTCTTAGCACTCAAGTAATTGCTCGACCTTATTACCAGCCAGAGACCCACCACAAACTCACTCCCTCCGCCACCGTCTCATCGGCGGTCGGGGACTCTTTGCAAAAGATTCCACCTTGGTTGAGGAAAATTTTTCCCAAAAAACCTCCCAAACTCCCAAATATCAACTTGCCACCACCACCACCGCCGCGGGTTCGCAGACCAAAACCACCTTCTTCCAACTGA

Coding sequence (CDS)

ATGTCTAAAAAGTATTTGGTTATTCTTGTTCTTGGAGTGATTCTTCTTAGCACTCAAGTAATTGCTCGACCTTATTACCAGCCAGAGACCCACCACAAACTCACTCCCTCCGCCACCGTCTCATCGGCGGTCGGGGACTCTTTGCAAAAGATTCCACCTTGGTTGAGGAAAATTTTTCCCAAAAAACCTCCCAAACTCCCAAATATCAACTTGCCACCACCACCACCGCCGCGGGTTCGCAGACCAAAACCACCTTCTTCCAACTGA

Protein sequence

MSKKYLVILVLGVILLSTQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIFPKKPPKLPNINLPPPPPPRVRRPKPPSSN
Homology
[Close]
BLAST of Cla97C06G116580 vs. NCBI nr
Match: ABF19725.1 (pathogen induced 4 protein [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 1  MSKKYLVILVLGVILLSTQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIFP 60
          MS K+LVIL+LGVILLSTQVIARPYY  E HH+LTPSATV SAVG+SLQK+PPWL+KIFP
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP 60

Query: 61 KKPPK 66
          KKPPK
Sbjct: 61 KKPPK 65

[Close]
BLAST of Cla97C06G116580 vs. NCBI nr
Match: XP_016902583.1 (PREDICTED: uncharacterized protein LOC107991740 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1  MSKKYLVILVLGVILL-STQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIF 60
          MS K+LVIL+LGVILL STQVIAR YY PE HH+LTPSATV SAVG SL K+PPWL+K F
Sbjct: 1  MSHKHLVILLLGVILLSSTQVIARTYYLPENHHRLTPSATVPSAVGKSLPKLPPWLKKNF 60

Query: 61 PKKPPKLPNI 70
          PKK P+LP I
Sbjct: 61 PKK-PRLPKI 69

[Close]
BLAST of Cla97C06G116580 vs. NCBI nr
Match: KGN61604.1 (hypothetical protein Csa_2G176180 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MSKKYLVI-LVLGVILLSTQVIARPYYQPETHHKLTPSATVSSA 44
          MS+KYLVI L+LGVILLSTQV+ARPYY  E HHKLTPSATVS+A
Sbjct: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAA 44

[Close]
BLAST of Cla97C06G116580 vs. TrEMBL
Match: tr|A0MCW3|A0MCW3_CUCSA (Pathogen induced 4 protein OS=Cucumis sativus OX=3659 GN=pi4 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 1  MSKKYLVILVLGVILLSTQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIFP 60
          MS K+LVIL+LGVILLSTQVIARPYY  E HH+LTPSATV SAVG+SLQK+PPWL+KIFP
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKLPPWLKKIFP 60

Query: 61 KKPPK 66
          KKPPK
Sbjct: 61 KKPPK 65

[Close]
BLAST of Cla97C06G116580 vs. TrEMBL
Match: tr|A0A1S4E2Y7|A0A1S4E2Y7_CUCME (uncharacterized protein LOC107991740 OS=Cucumis melo OX=3656 GN=LOC107991740 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1  MSKKYLVILVLGVILL-STQVIARPYYQPETHHKLTPSATVSSAVGDSLQKIPPWLRKIF 60
          MS K+LVIL+LGVILL STQVIAR YY PE HH+LTPSATV SAVG SL K+PPWL+K F
Sbjct: 1  MSHKHLVILLLGVILLSSTQVIARTYYLPENHHRLTPSATVPSAVGKSLPKLPPWLKKNF 60

Query: 61 PKKPPKLPNI 70
          PKK P+LP I
Sbjct: 61 PKK-PRLPKI 69

[Close]
BLAST of Cla97C06G116580 vs. TrEMBL
Match: tr|A0A0A0LKM8|A0A0A0LKM8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176180 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MSKKYLVI-LVLGVILLSTQVIARPYYQPETHHKLTPSATVSSA 44
          MS+KYLVI L+LGVILLSTQV+ARPYY  E HHKLTPSATVS+A
Sbjct: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAA 44

The following BLAST results are available for this feature:
BLAST of Cla97C06G116580 vs. NCBI nr
Match NameE-valueIdentityDescription
ABF19725.12.2e-2183.08pathogen induced 4 protein [Cucumis sativus][more]
XP_016902583.11.9e-1775.71PREDICTED: uncharacterized protein LOC107991740 [Cucumis melo][more]
KGN61604.12.8e-0881.82hypothetical protein Csa_2G176180 [Cucumis sativus][more]
BLAST of Cla97C06G116580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0MCW3|A0MCW3_CUCSA1.4e-2183.08Pathogen induced 4 protein OS=Cucumis sativus OX=3659 GN=pi4 PE=2 SV=1[more]
tr|A0A1S4E2Y7|A0A1S4E2Y7_CUCME1.3e-1775.71uncharacterized protein LOC107991740 OS=Cucumis melo OX=3656 GN=LOC107991740 PE=... [more]
tr|A0A0A0LKM8|A0A0A0LKM8_CUCSA1.8e-0881.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176180 PE=4 SV=1[more]
BLAST of Cla97C06G116580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C06G116580 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G116580.1Cla97C06G116580.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..88

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G116580Cla007582Watermelon (97103) v1wmwmbB406
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G116580Watermelon (97103) v2wmbwmbB137
Cla97C06G116580Watermelon (97103) v2wmbwmbB156
Cla97C06G116580Silver-seed gourdcarwmbB0230
Cla97C06G116580Silver-seed gourdcarwmbB0237
Cla97C06G116580Silver-seed gourdcarwmbB0787
Cla97C06G116580Silver-seed gourdcarwmbB0819
Cla97C06G116580Silver-seed gourdcarwmbB1009
Cla97C06G116580Silver-seed gourdcarwmbB1133
Cla97C06G116580Cucumber (Gy14) v2cgybwmbB141
Cla97C06G116580Cucumber (Gy14) v2cgybwmbB222
Cla97C06G116580Cucumber (Gy14) v1cgywmbB038
Cla97C06G116580Cucumber (Gy14) v1cgywmbB453
Cla97C06G116580Cucumber (Gy14) v1cgywmbB658
Cla97C06G116580Cucurbita maxima (Rimu)cmawmbB266
Cla97C06G116580Cucurbita maxima (Rimu)cmawmbB377
Cla97C06G116580Cucurbita maxima (Rimu)cmawmbB539
Cla97C06G116580Cucurbita maxima (Rimu)cmawmbB653
Cla97C06G116580Cucurbita maxima (Rimu)cmawmbB865
Cla97C06G116580Cucurbita maxima (Rimu)cmawmbB921
Cla97C06G116580Cucurbita moschata (Rifu)cmowmbB246
Cla97C06G116580Cucurbita moschata (Rifu)cmowmbB361
Cla97C06G116580Cucurbita moschata (Rifu)cmowmbB520
Cla97C06G116580Cucurbita moschata (Rifu)cmowmbB627
Cla97C06G116580Cucurbita moschata (Rifu)cmowmbB837
Cla97C06G116580Cucurbita moschata (Rifu)cmowmbB896
Cla97C06G116580Wild cucumber (PI 183967)cpiwmbB149
Cla97C06G116580Wild cucumber (PI 183967)cpiwmbB239
Cla97C06G116580Wild cucumber (PI 183967)cpiwmbB242
Cla97C06G116580Cucumber (Chinese Long) v3cucwmbB148
Cla97C06G116580Cucumber (Chinese Long) v3cucwmbB233
Cla97C06G116580Cucumber (Chinese Long) v3cucwmbB236
Cla97C06G116580Cucumber (Chinese Long) v2cuwmbB147
Cla97C06G116580Cucumber (Chinese Long) v2cuwmbB231
Cla97C06G116580Cucumber (Chinese Long) v2cuwmbB234
Cla97C06G116580Bottle gourd (USVL1VR-Ls)lsiwmbB026
Cla97C06G116580Bottle gourd (USVL1VR-Ls)lsiwmbB341
Cla97C06G116580Bottle gourd (USVL1VR-Ls)lsiwmbB342
Cla97C06G116580Melon (DHL92) v3.6.1medwmbB378
Cla97C06G116580Melon (DHL92) v3.6.1medwmbB442
Cla97C06G116580Melon (DHL92) v3.5.1mewmbB388
Cla97C06G116580Melon (DHL92) v3.5.1mewmbB448
Cla97C06G116580Watermelon (Charleston Gray)wcgwmbB237
Cla97C06G116580Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G116580Watermelon (Charleston Gray)wcgwmbB305
Cla97C06G116580Watermelon (97103) v1wmwmbB165
Cla97C06G116580Watermelon (97103) v1wmwmbB217
Cla97C06G116580Wax gourdwgowmbB095
Cla97C06G116580Wax gourdwgowmbB204
Cla97C06G116580Wax gourdwgowmbB259