Cla007032 (gene) Watermelon (97103) v1

Overview
NameCla007032
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 987273 .. 988651 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGTCTTCTGTTTTGATGTCATAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAAGTAAGGCTTACCCATGTGAACTAGTTGAAGCATCCATTACAATTTTTGTTGCAGCATAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTATTTTTATAAATAATTTTCCTTTCCTTTCTTTTCTTTTTTTAATTAAACTTTAAGAATCAATTTTGTTAATGGTATGAAATTACGAAAGAAGGGGGAAAAACCTACTCCAAATGAGACTCTCCAATTGGATATAAAAGAAGCATGGTGAAAGAGATGAGAGCATTCACACTAAGAAATTGTCGTAAAAGCGATAGAAGAAAGCCCTTGTAAAGTGCATCCATAAGAGCTTTTTTTCTTAGTTGAAAGGATGACCCCCAAAAACATACTAGAGGAGGAGGAGGAGATTTTGAGGGAGAGCTGTATGTCGACCCCCCAAAGCATGATAGTTGCCCCCATAATTTTGATGCAAATTTGCAGGACACAGAAAGACCTTGAGACTTAGGAGCTGTCTATGCGCATGACACAAACTACTAGACTTTGTTCAAGAAAATAATGCATCCTTGAGATACCACTGTCTCAATATCTAATCTCTCACTCTCCCAATGCCACCTCACTTAGTTACAACTTCTGCCCACCAAAGTTTAAGAACAATCTACTCTCAATGTAAGATTTTGTTAGGAATGTTAGCAGGGAACTATTTGGGATATTATTAGGTTATTTGGAGGGCATAGTTTGTTAGAAAAGAGGTTATAAACGCAGTTGCATAGAGGGGTTTGAGATAGGCAGAGTGTAGACATTTTGGGAGAGTCCACGCCTCTCAAAGTGTTTGGTTTTCGTAAATTTTCTTTTATATGGGAATACAATTTAAGTGTTATTTTCTTACTTCCATTCTCAATCAAAATTGGGTTCCTATCATCCTTCCCTTTATCATCCTTCCCTTTCATGTTATCTTTGGAACGCATTTATTGTTAGTGACCTATAAAAAATGTCTAATGAAATATTATTAACAGCTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGTAGTACCACGATTTTCCTCCTCTTCCACCTCGAATGTTACAACCATTCATTCATTTGCAACATAAGTCTTGTACATGTTCACTATCCATGTAGACAAATATGGGAATTGAGAAGTGCCTTTCCTGTCCATATGCGTTCATATGTGTAG

mRNA sequence

TTGGTCTTCTGTTTTGATGTCATAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGTAGTACCACGATTTTCCTCCTCTTCCACCTCGAATGTTACAACCATTCATTCATTTGCAACATAAGTCTTGTACATGTTCACTATCCATGTAGACAAATATGGGAATTGAGAAGTGCCTTTCCTGTCCATATGCGTTCATATGTGTAG

Coding sequence (CDS)

TTGGTCTTCTGTTTTGATGTCATAGGTTTCGAGGCAGCCATCACAGATTACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGATGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGTATTTGATCAAGTTTTGGCAAACTTAGCCCGTTCAGCACCACCAATGCCAGGATTTCGTAGGCAAAAAGGAGGTAGTACCACGATTTTCCTCCTCTTCCACCTCGAATGTTACAACCATTCATTCATTTGCAACATAAGTCTTGTACATGTTCACTATCCATGTAGACAAATATGGGAATTGAGAAGTGCCTTTCCTGTCCATATGCGTTCATATGTGTAG

Protein sequence

LVFCFDVIGFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPMPGFRRQKGGSTTIFLLFHLECYNHSFICNISLVHVHYPCRQIWELRSAFPVHMRSYV
Homology
[Close]
BLAST of Cla007032 vs. TrEMBL
Match: A0A0A0K988_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086160 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-27
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EAAITDYKGN ITLKNAKVVVESE+EN+IQLRVDLTGDETQKVFDQVL NLARSAPPM
Sbjct: 82  GLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTGDETQKVFDQVLTNLARSAPPM 141

Query: 69  PGFRRQKGGSTT 81
           PGFR+QKGG T+
Sbjct: 142 PGFRKQKGGKTS 153

[Close]
BLAST of Cla007032 vs. TrEMBL
Match: M5XGM1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011327mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 50/72 (69.44%), Postives = 64/72 (88.89%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EA+I D +GN ITLK AK+V+ES ++N+IQ+RVDLTGD+T+KVFD+VL NLAR+APP+
Sbjct: 63  GLEASIADVEGNLITLKTAKIVIESREDNKIQVRVDLTGDDTEKVFDKVLTNLARTAPPV 122

Query: 69  PGFRRQKGGSTT 81
           PGFRRQKGG T+
Sbjct: 123 PGFRRQKGGKTS 134

[Close]
BLAST of Cla007032 vs. TrEMBL
Match: B9SX52_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0547670 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.1e-20
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G E   TD K NAITLKNAKVVVES  EN+IQLRVDL+GDET+ VF +VLANLAR+APP+
Sbjct: 64  GLETTFTDPKDNAITLKNAKVVVESMQENKIQLRVDLSGDETEIVFSKVLANLARTAPPI 123

Query: 69  PGFRRQKGG 78
           PGFRR+KGG
Sbjct: 124 PGFRREKGG 132

[Close]
BLAST of Cla007032 vs. TrEMBL
Match: A0A067LAN8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05725 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 49/68 (72.06%), Postives = 61/68 (89.71%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EA+ITD K NA+  KNAK+VVES++E++IQLRVDL+GDETQKVFD+VL +L +SAPP+
Sbjct: 58  GLEASITDPKDNAMNFKNAKIVVESKEEDKIQLRVDLSGDETQKVFDKVLTDLGKSAPPI 117

Query: 69  PGFRRQKG 77
           PGFRRQKG
Sbjct: 118 PGFRRQKG 125

[Close]
BLAST of Cla007032 vs. TrEMBL
Match: A0A0B2QUW1_GLYSO (Trigger factor OS=Glycine soja GN=glysoja_010242 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EA+ITD    +  L NAK+VV+SEDEN+IQLRVDLTGD+TQKVFD++L NL R+APP+
Sbjct: 80  GLEASITDSNDISAILANAKIVVDSEDENKIQLRVDLTGDQTQKVFDRILTNLGRTAPPV 139

Query: 69  PGFRRQKGGSTT 81
           PGFR QKGG ++
Sbjct: 140 PGFRMQKGGKSS 151

[Close]
BLAST of Cla007032 vs. NCBI nr
Match: gi|659120113|ref|XP_008460020.1| (PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 6.7e-28
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EAA+TDYKGNAITLKNAKVVVESE+EN+IQLRVDLTGDETQKVFDQVL NLARSAPPM
Sbjct: 83  GLEAALTDYKGNAITLKNAKVVVESEEENKIQLRVDLTGDETQKVFDQVLTNLARSAPPM 142

Query: 69  PGFRRQKGGSTT 81
           PGFR+QKGG T+
Sbjct: 143 PGFRKQKGGKTS 154

[Close]
BLAST of Cla007032 vs. NCBI nr
Match: gi|778711475|ref|XP_011656737.1| (PREDICTED: uncharacterized protein LOC101212225 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EAAITDYKGN ITLKNAKVVVESE+EN+IQLRVDLTGDETQKVFDQVL NLARSAPPM
Sbjct: 82  GLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTGDETQKVFDQVLTNLARSAPPM 141

Query: 69  PGFRRQKGGSTT 81
           PGFR+QKGG T+
Sbjct: 142 PGFRKQKGGKTS 153

[Close]
BLAST of Cla007032 vs. NCBI nr
Match: gi|694329251|ref|XP_009355392.1| (PREDICTED: uncharacterized protein LOC103946417 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EA+I D +GN ITLK AK+VVES+D+N+IQ+RVDLTGD+TQKVFD+VL NLAR+APP+
Sbjct: 83  GLEASIGDAQGNLITLKTAKIVVESQDDNKIQVRVDLTGDDTQKVFDRVLTNLARTAPPV 142

Query: 69  PGFRRQKGGSTT 81
           PGFRRQKGG T+
Sbjct: 143 PGFRRQKGGKTS 154

[Close]
BLAST of Cla007032 vs. NCBI nr
Match: gi|694329253|ref|XP_009355393.1| (PREDICTED: uncharacterized protein LOC103946417 isoform X3 [Pyrus x bretschneideri])

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EA+I D +GN ITLK AK+VVES+D+N+IQ+RVDLTGD+TQKVFD+VL NLAR+APP+
Sbjct: 80  GLEASIGDAQGNLITLKTAKIVVESQDDNKIQVRVDLTGDDTQKVFDRVLTNLARTAPPV 139

Query: 69  PGFRRQKGGSTT 81
           PGFRRQKGG T+
Sbjct: 140 PGFRRQKGGKTS 151

[Close]
BLAST of Cla007032 vs. NCBI nr
Match: gi|694329247|ref|XP_009355391.1| (PREDICTED: uncharacterized protein LOC103946417 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 1 

Query: 9   GFEAAITDYKGNAITLKNAKVVVESEDENQIQLRVDLTGDETQKVFDQVLANLARSAPPM 68
           G EA+I D +GN ITLK AK+VVES+D+N+IQ+RVDLTGD+TQKVFD+VL NLAR+APP+
Sbjct: 82  GLEASIGDAQGNLITLKTAKIVVESQDDNKIQVRVDLTGDDTQKVFDRVLTNLARTAPPV 141

Query: 69  PGFRRQKGGSTT 81
           PGFRRQKGG T+
Sbjct: 142 PGFRRQKGGKTS 153

The following BLAST results are available for this feature:
BLAST of Cla007032 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K988_CUCSA1.0e-2788.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G086160 PE=4 SV=1[more]
M5XGM1_PRUPE1.5e-2169.44Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011327mg PE=4 SV=1[more]
B9SX52_RICCO6.1e-2075.36Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0547670 PE=4 SV=1[more]
A0A067LAN8_JATCU1.4e-1972.06Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05725 PE=4 SV=1[more]
A0A0B2QUW1_GLYSO4.0e-1966.67Trigger factor OS=Glycine soja GN=glysoja_010242 PE=4 SV=1[more]
BLAST of Cla007032 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120113|ref|XP_008460020.1|6.7e-2888.89PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo][more]
gi|778711475|ref|XP_011656737.1|1.5e-2788.89PREDICTED: uncharacterized protein LOC101212225 [Cucumis sativus][more]
gi|694329251|ref|XP_009355392.1|3.2e-2273.61PREDICTED: uncharacterized protein LOC103946417 isoform X2 [Pyrus x bretschneide... [more]
gi|694329253|ref|XP_009355393.1|3.2e-2273.61PREDICTED: uncharacterized protein LOC103946417 isoform X3 [Pyrus x bretschneide... [more]
gi|694329247|ref|XP_009355391.1|3.2e-2273.61PREDICTED: uncharacterized protein LOC103946417 isoform X1 [Pyrus x bretschneide... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008881Trigger_fac_ribosome-bd_bac
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0015031protein transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0015031 protein transport
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007032Cla007032.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008881Trigger factor, ribosome-binding, bacterialPFAMPF05697Trigger_Ncoord: 28..73
score: 2.
NoneNo IPR availablePANTHERPTHR30560TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASEcoord: 9..83
score: 4.3
NoneNo IPR availablePANTHERPTHR30560:SF2SUBFAMILY NOT NAMEDcoord: 9..83
score: 4.3