Cla006623 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006623
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	LOB domain protein 25 (AHRD V1 -- B6U340_MAIZE); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB
Location	Chr11 : 2201251 .. 2201736 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGATGTATAGTATATATTATTATATTTGAGTTATATAGAGATGAGTAAATTGTGTATGTTTGAATATTATAATTTGTAGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCCGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATCTCCTACTTTGGTTAA

mRNA sequence

ATGTATGATGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCCGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATCTCCTACTTTGGTTAA

Coding sequence (CDS)

ATGTATGATGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCCGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATCTCCTACTTTGGTTAA

Protein sequence

MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG

Homology

[Close]

BLAST of Cla006623 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  EVPESQRADAANSLVYEAN+RLRDPVYGCMG ISALQ Q+  LQ++L ++R++I  +
Sbjct: 89  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKY 148

Query: 61  KFTQ-------HNNSHIPNF-----ISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIF 112
           K  +        +NS +  F     +S  A PP  P TPP     P +  PP P SS +F
Sbjct: 149 KQREAVATLIVPSNSQVAGFHNSGGVSVIAPPPQRPTTPPQ----PTTAHPPSP-SSCVF 206

[Close]

BLAST of Cla006623 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 68/148 (45.95%), Postives = 80/148 (54.05%), Query Frame = 1


Query: 4   EVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFT 63
           EV ESQR DAANSLVYEANLRLRDP+YGCMG ISALQH + +LQS+L ++RT+I   K+ 
Sbjct: 99  EVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQ 158

Query: 64  QHN--NSHIPNFISAAAT------------------PPAAPPTPP-----HSQPPPLSLP 123
           +     S   NF S   T                  PP  PPTP       SQP P   P
Sbjct: 159 EATTITSLQNNFNSTTTTSSVSCDQHALASAILLPPPPPPPPTPRPPRLLSSQPAPPPTP 218

Query: 124 P-PLPSSSSIFSSPIITTTTAAPELINP 126
           P  LPS S + SS   + ++A   + NP
Sbjct: 219 PVSLPSPSMVVSSSSSSNSSATNSMYNP 246

[Close]

BLAST of Cla006623 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           + +E+  SQR DA NSL YEA++RLRDPVYGC+GVIS LQHQL  LQ DL+  ++++  +
Sbjct: 53  LLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

Query: 61  K 62
           +
Sbjct: 113 Q 113

[Close]

BLAST of Cla006623 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.3e-12
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1


Query: 4   EVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFT 63
           E+PESQR DA NS+VYEA  R+RDPVYGC G I  LQ Q+  LQ+ L   + ++ N +F 
Sbjct: 80  ELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

Query: 64  QHN 67
           + N
Sbjct: 140 RSN 142

[Close]

BLAST of Cla006623 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.6e-12
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  E+P  QR DA +S+VYEAN R+RDPVYGC+G IS+LQ Q+  LQ+ L   + ++ + 
Sbjct: 57  MLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL 116

Query: 61  KFTQHNN----SHIPNFISAAATPPAAPPTP 88
           +  Q  N       P+  S++ +P +   +P
Sbjct: 117 RVRQSTNFPGHGLCPDSPSSSGSPSSKQVSP 147

[Close]

BLAST of Cla006623 vs. TrEMBL
Match: A0A0A0K8P6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013950 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.5e-51
Identity = 112/147 (76.19%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  EVPE+QRADAANSLVYEANLRLRDPVYGCMG ISALQHQLHTLQSDLN+I TQIF +
Sbjct: 109 MLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLHTLQSDLNAITTQIFKY 168

Query: 61  KFTQH--NNSHIPNFI--SAAATPPAAPPTPPHSQPPPLSLPPPLP---SSSSIFSSPII 120
           KFT H  N    PNF+  S AATPP APPTPPHSQPPPLSLPPPLP   SSSS+FS PII
Sbjct: 169 KFTHHPINIPSSPNFMAPSPAATPPVAPPTPPHSQPPPLSLPPPLPPSSSSSSVFSPPII 228

Query: 121 TTTTAAP--ELINPI--STTQHISYFG 137
           TT T+    ELINPI  ++TQHISYFG
Sbjct: 229 TTATSTTVVELINPIVPTSTQHISYFG 255

[Close]

BLAST of Cla006623 vs. TrEMBL
Match: U5FV55_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08040g PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-27
Identity = 67/139 (48.20%), Postives = 100/139 (71.94%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  EVP++QRADAANSLVYEAN+RLRDPVYGCMG ISALQ Q+ +L+++LN++R +I  +
Sbjct: 86  MLMEVPQNQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLEAELNAVRNEILKY 145

Query: 61  KFTQHN---NSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTT 120
           ++ + N   +SH+   +S+ A   AAP   P + PPP + PPP  SSSS+++ P   T++
Sbjct: 146 RYREANIIHSSHVA-LLSSGAVSIAAPSPAPSTPPPPTASPPPSSSSSSMYTQP---TSS 205

Query: 121 AAPELINPISTTQHISYFG 137
           AA +     ++T+++S+FG
Sbjct: 206 AAADY--STTSTENVSFFG 218

[Close]

BLAST of Cla006623 vs. TrEMBL
Match: A0A0D2SA42_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G295000 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.6e-27
Identity = 69/140 (49.29%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  EVPESQRADAANSLVYEAN+RLRDPVYGCMG ISALQ Q+ +LQ++LN++R +I  +
Sbjct: 93  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEIIKY 152

Query: 61  KFTQHN----NSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTT 120
           K  + N    +SH+   +S+ A   AAPP P  +QPPP   PPPLP+++++ +  I T  
Sbjct: 153 KCREANLVPPSSHVA-MLSSGAVSVAAPP-PATTQPPPPPPPPPLPTTTAVTTCSIYTQP 212

Query: 121 TAAPELINPISTTQHISYFG 137
             + +      +  ++SYFG
Sbjct: 213 NTSTDYTT--LSNDNVSYFG 228

[Close]

BLAST of Cla006623 vs. TrEMBL
Match: A0A0D2QQ34_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G295000 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.6e-27
Identity = 69/140 (49.29%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  EVPESQRADAANSLVYEAN+RLRDPVYGCMG ISALQ Q+ +LQ++LN++R +I  +
Sbjct: 88  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEIIKY 147

Query: 61  KFTQHN----NSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTT 120
           K  + N    +SH+   +S+ A   AAPP P  +QPPP   PPPLP+++++ +  I T  
Sbjct: 148 KCREANLVPPSSHVA-MLSSGAVSVAAPP-PATTQPPPPPPPPPLPTTTAVTTCSIYTQP 207

Query: 121 TAAPELINPISTTQHISYFG 137
             + +      +  ++SYFG
Sbjct: 208 NTSTDYTT--LSNDNVSYFG 223

[Close]

BLAST of Cla006623 vs. NCBI nr
Match: gi|659113801|ref|XP_008456762.1| (PREDICTED: LOB domain-containing protein 15-like [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 2.1e-51
Identity = 114/147 (77.55%), Postives = 121/147 (82.31%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  EVPE+QRADAANSLVYEANLRLRDPVYGCMG ISALQHQLHTLQSDLN+I TQIF +
Sbjct: 108 MLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLHTLQSDLNAITTQIFKY 167

Query: 61  KFTQH--NNSHIPNFI--SAAATPPAAPPTPPHSQPPPLSLPPPLP---SSSSIFSSPII 120
           KFT H  N    PNFI  S AATPPAAPPTPPHSQPPPLSLPPPLP   SSSS+FS PII
Sbjct: 168 KFTHHPINIPSSPNFISPSPAATPPAAPPTPPHSQPPPLSLPPPLPPSSSSSSVFSPPII 227

Query: 121 TTTTAAP--ELINPI--STTQHISYFG 137
           TT T+    ELINPI  ++TQHISYFG
Sbjct: 228 TTATSTTVVELINPIVSTSTQHISYFG 254

[Close]

BLAST of Cla006623 vs. NCBI nr
Match: gi|449441568|ref|XP_004138554.1| (PREDICTED: LOB domain-containing protein 15 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.4e-50
Identity = 112/147 (76.19%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  EVPE+QRADAANSLVYEANLRLRDPVYGCMG ISALQHQLHTLQSDLN+I TQIF +
Sbjct: 109 MLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLHTLQSDLNAITTQIFKY 168

Query: 61  KFTQH--NNSHIPNFI--SAAATPPAAPPTPPHSQPPPLSLPPPLP---SSSSIFSSPII 120
           KFT H  N    PNF+  S AATPP APPTPPHSQPPPLSLPPPLP   SSSS+FS PII
Sbjct: 169 KFTHHPINIPSSPNFMAPSPAATPPVAPPTPPHSQPPPLSLPPPLPPSSSSSSVFSPPII 228

Query: 121 TTTTAAP--ELINPI--STTQHISYFG 137
           TT T+    ELINPI  ++TQHISYFG
Sbjct: 229 TTATSTTVVELINPIVPTSTQHISYFG 255

[Close]

BLAST of Cla006623 vs. NCBI nr
Match: gi|1009173029|ref|XP_015867594.1| (PREDICTED: LOB domain-containing protein 15-like [Ziziphus jujuba])

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-29
Identity = 76/133 (57.14%), Postives = 93/133 (69.92%), Query Frame = 1


Query: 4   EVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFT 63
           EVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQL +LQ++LN+IRT I  +K+ 
Sbjct: 94  EVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLQSLQAELNAIRTDILKYKY- 153

Query: 64  QHNNSHI-------PNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTT 123
           +   +HI       P  +S AA P A  P+PP  +PPP   PPP P SS + SS   ++T
Sbjct: 154 REAATHIVSSSLVSPGVVSIAAPPQAISPSPPPPRPPP---PPPRPPSSVVISS---SST 213

Query: 124 TAAPELINPISTT 130
           ++   L  P +TT
Sbjct: 214 SSTSSLYTPSTTT 219

[Close]

BLAST of Cla006623 vs. NCBI nr
Match: gi|1009116120|ref|XP_015874603.1| (PREDICTED: LOB domain-containing protein 13 [Ziziphus jujuba])

HSP 1 Score: 135.6 bits (340), Expect = 6.6e-29
Identity = 75/133 (56.39%), Postives = 92/133 (69.17%), Query Frame = 1


Query: 4   EVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFT 63
           EVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQL +LQ++LN+IRT I  +K+ 
Sbjct: 94  EVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLQSLQAELNAIRTDILKYKY- 153

Query: 64  QHNNSHI-------PNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTT 123
           +   +HI       P  +S AA P A  P+PP  +PPP   PPP P  S + SS   ++T
Sbjct: 154 REAATHIVSSSLVSPGVVSIAAPPQAISPSPPPPRPPP---PPPRPPPSVVISS---SST 213

Query: 124 TAAPELINPISTT 130
           ++   L  P +TT
Sbjct: 214 SSTSSLYTPSTTT 219

[Close]

BLAST of Cla006623 vs. NCBI nr
Match: gi|225448621|ref|XP_002279029.1| (PREDICTED: LOB domain-containing protein 15 [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 9.5e-28
Identity = 75/146 (51.37%), Postives = 99/146 (67.81%), Query Frame = 1


Query: 1   MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNF 60
           M  EVPESQRADAANSLVYEAN+RLRDPVYGCMG ISALQ Q+ +LQ++LN++R +I  +
Sbjct: 86  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKY 145

Query: 61  KFTQHN---NSHI----PNFISAAATPPAAPPT---PPHSQPPPLSLPPPLPSSSSIFSS 120
           K+ + N    SHI       +S AA PPA PP    PP   PPP+ LP P  SSSS+++ 
Sbjct: 146 KYREANIIPPSHIALLSSGAVSVAAPPPAQPPAQAPPPPPPPPPIPLPLPPNSSSSMYTQ 205

Query: 121 PIITTTTAAPELINPISTTQHISYFG 137
           P   +++A    I    +++++SYFG
Sbjct: 206 P---SSSADYSTI----SSENVSYFG 224

The following BLAST results are available for this feature:

BLAST of Cla006623 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD15_ARATH	1.1e-23	51.22	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]
LBD13_ARATH	1.9e-23	45.95	LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2	[more]
LBD6_ARATH	8.6e-13	55.74	LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1	[more]
LBD1_ARATH	7.3e-12	52.38	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD4_ARATH	9.6e-12	39.56	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]

BLAST of Cla006623 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8P6_CUCSA	9.5e-51	76.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013950 PE=4 SV=1	[more]
U5FV55_POPTR	2.5e-27	48.20	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08040g PE=4 SV=1	[more]
A0A0D2SA42_GOSRA	9.6e-27	49.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G295000 PE=4 SV=1	[more]
A0A0D2QQ34_GOSRA	9.6e-27	49.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G295000 PE=4 SV=1	[more]

BLAST of Cla006623 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113801\|ref\|XP_008456762.1\|	2.1e-51	77.55	PREDICTED: LOB domain-containing protein 15-like [Cucumis melo]	[more]
gi\|449441568\|ref\|XP_004138554.1\|	1.4e-50	76.19	PREDICTED: LOB domain-containing protein 15 [Cucumis sativus]	[more]
gi\|1009173029\|ref\|XP_015867594.1\|	1.7e-29	57.14	PREDICTED: LOB domain-containing protein 15-like [Ziziphus jujuba]	[more]
gi\|1009116120\|ref\|XP_015874603.1\|	6.6e-29	56.39	PREDICTED: LOB domain-containing protein 13 [Ziziphus jujuba]	[more]
gi\|225448621\|ref\|XP_002279029.1\|	9.5e-28	51.37	PREDICTED: LOB domain-containing protein 15 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006623	Cla006623.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 3..54 score: 1.4
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 1..57 score: 12
None	No IPR available	unknown	Coil	Coil	coord: 36..56 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..108 score: 5.3
None	No IPR available	PANTHER	PTHR31301:SF2	LOB DOMAIN-CONTAINING PROTEIN 15	coord: 1..108 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006623	Cla97C11G212720	Watermelon (97103) v2	wmwmbB362
Cla006623	ClCG11G005800	Watermelon (Charleston Gray)	wcgwmB108
Cla006623	CSPI06G02030	Wild cucumber (PI 183967)	cpiwmB552
Cla006623	Cucsa.326100	Cucumber (Gy14) v1	cgywmB592
Cla006623	CmaCh15G001570	Cucurbita maxima (Rimu)	cmawmB283
Cla006623	CmaCh04G010740	Cucurbita maxima (Rimu)	cmawmB740
Cla006623	CmaCh04G001130	Cucurbita maxima (Rimu)	cmawmB742
Cla006623	CmoCh04G011400	Cucurbita moschata (Rifu)	cmowmB734
Cla006623	CmoCh15G001700	Cucurbita moschata (Rifu)	cmowmB274
Cla006623	Lsi03G002750	Bottle gourd (USVL1VR-Ls)	lsiwmB277
Cla006623	Cp4.1LG13g07450	Cucurbita pepo (Zucchini)	cpewmB196
Cla006623	Cp4.1LG01g11560	Cucurbita pepo (Zucchini)	cpewmB464
Cla006623	CsGy6G002110	Cucumber (Gy14) v2	cgybwmB497
Cla006623	MELO3C019995.2	Melon (DHL92) v3.6.1	medwmB331
Cla006623	Carg02149	Silver-seed gourd	carwmB0261
Cla006623	Carg00177	Silver-seed gourd	carwmB0673
Cla006623	CsaV3_6G002180	Cucumber (Chinese Long) v3	cucwmB558
Cla006623	Bhi04G001849	Wax gourd	wgowmB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006623	Cucurbita maxima (Rimu)	cmawmB737
Cla006623	Silver-seed gourd	carwmB0024