Cla006240 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006240
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Embryo-specific 3 (AHRD V1 ***- Q2HUA9_MEDTR); contains Interpro domain(s) IPR010417 Embryo-specific 3
Location	Chr5 : 7671189 .. 7672426 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGGGTACTCTGTTTTCTGCTTACCTCCGCCATTCTTTTCCCTCTCTTAGAAGCCACCGAATTGCTACCCCAACCCGCTGAATCCTTTAATTTAACCTATATTCAGGTATCGCCGTTTCGTATTGGTTTTTTCCATTTCCATTTTTGCTGATTCTCAATCTGTTATCTGAGAACGATTCTGTGTTTTCTGATTTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACGAGCTGTTCGTCGCCTTCATACACGAGGGATCAGATCAGTCTTTCATTCGGCGATGCTTATGGAAACCAGGTTTTCCTCGATTAAATCTTCATTTCCCCGCTAATATTATCGGGATAGAAAGCCCTTGGTTTCTCGATCGTTCACGATTTAGCTAATTTCAGATATTCGAAATGGTTGATGAAAAAAATCGGAGTTGAATTTTGCATCTGAGTTTCGGAAAGTTTTCCATTTGATTAGGGATAAAAACGCATAGGCATATTAATATCTTAGGTTAAAGTAATAGATTGGTACATTAACACATCTATTTCTCGAATCTTGATTATTATGGGATCATAGTCTGTTGATTTATATGTTTCAGAACTTCAAATCAGGTATGTATTTATTGGTACATTAACATATCTTAGAAAACATATCCATAGTCATTAGCCTGTTGAGCAATATCTTATAGTCCATTGATATGCCTAGAACTTCCTAAAACATTTTAAAGTTTCTCGAAACATCAGCAGTTCACAATGTGGAAATACAGGAATTTGAAAGAACACCATGTGATAATTCAAAAACAATAAACTTGTCTTCACTTTCAGATAAACTTGGGAATTTAACATGTTACAATTAATCATTGAAGAAGTTTGTTTTGTATAATGAGTGGTGAGTTTTGACTTGTGTACCAGATTTATGTGCCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTGATGATAAATTTGGACTAAATGGACCCTGTGCTTACCAAATATGCTATGTTTATCTTTATCGCTCCGGACCAGATGCCTGGATTCCAACGACAGTGACAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCTTCATCTTCAAACCGTAGTTCAAGTTGCATAGGGCTCTTATATGTCATTTTAGTGTCTATGCTTCTACTTCTCTTGTAA

mRNA sequence

ATGAAAGGGGTACTCTGTTTTCTGCTTACCTCCGCCATTCTTTTCCCTCTCTTAGAAGCCACCGAATTGCTACCCCAACCCGCTGAATCCTTTAATTTAACCTATATTCAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACGAGCTGTTCGTCGCCTTCATACACGAGGGATCAGATCAGTCTTTCATTCGGCGATGCTTATGGAAACCAGATTTATGTGCCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTGATGATAAATTTGGACTAAATGGACCCTGTGCTTACCAAATATGCTATGTTTATCTTTATCGCTCCGGACCAGATGCCTGGATTCCAACGACAGTGACAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCTTCATCTTCAAACCGTAGTTCAAGTTGCATAGGGCTCTTATATGTCATTTTAGTGTCTATGCTTCTACTTCTCTTGTAA

Coding sequence (CDS)

ATGAAAGGGGTACTCTGTTTTCTGCTTACCTCCGCCATTCTTTTCCCTCTCTTAGAAGCCACCGAATTGCTACCCCAACCCGCTGAATCCTTTAATTTAACCTATATTCAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACGAGCTGTTCGTCGCCTTCATACACGAGGGATCAGATCAGTCTTTCATTCGGCGATGCTTATGGAAACCAGATTTATGTGCCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTGATGATAAATTTGGACTAAATGGACCCTGTGCTTACCAAATATGCTATGTTTATCTTTATCGCTCCGGACCAGATGCCTGGATTCCAACGACAGTGACAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCTTCATCTTCAAACCGTAGTTCAAGTTGCATAGGGCTCTTATATGTCATTTTAGTGTCTATGCTTCTACTTCTCTTGTAA

Protein sequence

MKGVLCFLLTSAILFPLLEATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL

Homology

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: A0A0A0L5P4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G177980 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.5e-88
Identity = 159/180 (88.33%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRD 60
           +KGVLC LLTSAILF  LEATELLP+PAESFNLTYIQQLGSCSYSVVISTSC SP+YTRD
Sbjct: 3   IKGVLCLLLTSAILFSFLEATELLPKPAESFNLTYIQQLGSCSYSVVISTSCLSPAYTRD 62

Query: 61  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIP 120
           QISLSFGDAYGNQIYVPRLDDPSRRIFERCS D FG+NGPCAYQICYVYLYR+GPDAWIP
Sbjct: 63  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRTGPDAWIP 122

Query: 121 TTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL 180
           TTV ISGD+SRPVTFNYNTAIP DVWFGFNLCGH SSSNR SSCIG  YVI+VS++LLLL
Sbjct: 123 TTVRISGDNSRPVTFNYNTAIPGDVWFGFNLCGHPSSSNRISSCIGWFYVIIVSIILLLL 182

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: A0A0D2UB84_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G282900 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.1e-54
Identity = 103/156 (66.03%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 25  PQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQIYVPRLDDPSR 84
           PQ  ESFN++YIQ LGSCSYSVV +TSCSS SYTRDQIS++FGDAYGNQIYVPRLDDP+ 
Sbjct: 57  PQAFESFNVSYIQNLGSCSYSVVFTTSCSSTSYTRDQISIAFGDAYGNQIYVPRLDDPAS 116

Query: 85  RIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAIPND 144
           R FE+CS DKF + GPCAYQICYVYLYR+GPD W P  V I G +SR VTF Y+T IP D
Sbjct: 117 RAFEQCSSDKFEIKGPCAYQICYVYLYRTGPDGWKPEQVKIYGYNSRAVTFYYDTFIPGD 176

Query: 145 VWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL 181
            W+GFN C  ASSS+R       L+V+L  +L  L+
Sbjct: 177 TWYGFNYCNSASSSHRWIGQTSFLFVVLWFVLYALI 212

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: M5XKE5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010782mg PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-53
Identity = 105/182 (57.69%), Postives = 133/182 (73.08%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELL--PQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYT 60
           +K +   LL  A LF L EA   +  P+PA+ FN++ IQ  G+CSY+ +I+TSCSS  YT
Sbjct: 55  IKALSLLLLQVAFLFTLSEAKSSIIQPEPAKDFNISQIQNAGTCSYTAIITTSCSSTRYT 114

Query: 61  RDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAW 120
           RDQIS+SFGDAYGNQIY PRLDD S R FERCS D F + GPCAYQICY+Y+YR+GPD W
Sbjct: 115 RDQISISFGDAYGNQIYAPRLDDASSRTFERCSTDTFEIYGPCAYQICYLYVYRTGPDGW 174

Query: 121 IPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLL 180
            P  V I G +SR VTF+YNT IP+D+W+GFNLC  ASSS + S+   L+Y+I+  ++ L
Sbjct: 175 KPENVKIYGHNSRAVTFSYNTFIPSDLWYGFNLCNTASSSAQPSAQKWLIYLIVGLLVFL 234

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: A0A061G0A9_THECC (DEAD-box ATP-dependent RNA helicase 7 OS=Theobroma cacao GN=TCM_015015 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-53
Identity = 102/142 (71.83%), Postives = 115/142 (80.99%), Query Frame = 1


Query: 19  EATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQIYVPR 78
           E+    PQ  ESFN++YIQ LGSCSYSVVISTSCSS SYTRDQIS++FGDAYGNQIYVPR
Sbjct: 234 ESISQKPQAFESFNVSYIQNLGSCSYSVVISTSCSSTSYTRDQISIAFGDAYGNQIYVPR 293

Query: 79  LDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYN 138
           LDDPS R FE+CS D F + GPCAYQICYVYLYRSGPD W P +V I G +SR VTF Y+
Sbjct: 294 LDDPSTRTFEQCSSDTFEIYGPCAYQICYVYLYRSGPDGWKPESVKIYGYNSRAVTFYYD 353

Query: 139 TAIPNDVWFGFNLCGHASSSNR 161
           T IP D+W+GFN C  ASSS+R
Sbjct: 354 TFIPGDIWYGFNYCNTASSSHR 375

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: V4S840_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006003mg PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-53
Identity = 110/184 (59.78%), Postives = 131/184 (71.20%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEAT----ELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPS 60
           MK     LL  A  F L EA     +L P+  ESFN++YIQ LGSCSY+VVI+TSCSS  
Sbjct: 1   MKIAAPILLLLAFAFTLSEAETTSLQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSK 60

Query: 61  YTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPD 120
           YTRDQIS++FGDAYGNQIY PRLDDPS   FE CS D F + GPCAYQICYVYLYR+GPD
Sbjct: 61  YTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPD 120

Query: 121 AWIPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSML 180
            W P +V I G +SR V+F YNT IP+D+W+GFNLC  ASS+++       +YVIL  +L
Sbjct: 121 GWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLL 180

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|659077288|ref|XP_008439126.1| (PREDICTED: uncharacterized protein LOC103484016 [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 1.3e-88
Identity = 160/180 (88.89%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRD 60
           +KGVLC LLTSAILFP LEATELLP+PAESFNLTYIQQLGSCSYSVVISTSC SP+YTRD
Sbjct: 3   IKGVLCLLLTSAILFPSLEATELLPKPAESFNLTYIQQLGSCSYSVVISTSCLSPTYTRD 62

Query: 61  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIP 120
           QISLSFGDAYGNQIYVPRLDDPSRRIFERCS D FG+NGPCAYQICYVYLYR+GPDAWIP
Sbjct: 63  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRTGPDAWIP 122

Query: 121 TTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL 180
           TTVTISG +SRPVTFNYNTAIP+DVWFGFNLCGH SSSN  S CIG  YVILVS+LLLLL
Sbjct: 123 TTVTISGHNSRPVTFNYNTAIPSDVWFGFNLCGHPSSSNHISGCIGCFYVILVSILLLLL 182

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|449460778|ref|XP_004148122.1| (PREDICTED: uncharacterized protein LOC101207117 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 2.2e-88
Identity = 159/180 (88.33%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRD 60
           +KGVLC LLTSAILF  LEATELLP+PAESFNLTYIQQLGSCSYSVVISTSC SP+YTRD
Sbjct: 3   IKGVLCLLLTSAILFSFLEATELLPKPAESFNLTYIQQLGSCSYSVVISTSCLSPAYTRD 62

Query: 61  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIP 120
           QISLSFGDAYGNQIYVPRLDDPSRRIFERCS D FG+NGPCAYQICYVYLYR+GPDAWIP
Sbjct: 63  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRTGPDAWIP 122

Query: 121 TTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL 180
           TTV ISGD+SRPVTFNYNTAIP DVWFGFNLCGH SSSNR SSCIG  YVI+VS++LLLL
Sbjct: 123 TTVRISGDNSRPVTFNYNTAIPGDVWFGFNLCGHPSSSNRISSCIGWFYVIIVSIILLLL 182

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|1009122409|ref|XP_015877988.1| (PREDICTED: uncharacterized protein LOC107414390 [Ziziphus jujuba])

HSP 1 Score: 225.3 bits (573), Expect = 8.4e-56
Identity = 114/183 (62.30%), Postives = 131/183 (71.58%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATEL---LPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSY 60
           M   L  LL SA +F L  A EL   LP  A +FNL+YIQ   SCSYSVVI+TSCSS  Y
Sbjct: 1   MMRALSILLLSAFIFNLSAAEELSSPLPHAANNFNLSYIQNEASCSYSVVITTSCSSSKY 60

Query: 61  TRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDA 120
           TRDQIS++FGDAYGNQIY PRLDDPS   FERCS D F + GPCAYQICYVYLYRSGPD 
Sbjct: 61  TRDQISIAFGDAYGNQIYAPRLDDPSSGAFERCSSDTFDIYGPCAYQICYVYLYRSGPDG 120

Query: 121 WIPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLL 180
           W P +V I GD+SR VTF YNT IP+DVW+GFNLC  ASSS +       + +IL  ++ 
Sbjct: 121 WKPESVKIYGDNSRAVTFTYNTFIPSDVWYGFNLCNDASSSYQRYGRRWFMVMILGLLVF 180

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|1009122184|ref|XP_015877865.1| (PREDICTED: uncharacterized protein LOC107414269 [Ziziphus jujuba])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 113/183 (61.75%), Postives = 131/183 (71.58%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATEL---LPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSY 60
           M   L  LL SA +F L  A EL   LP  A +FNL+YIQ   SCSYSVVI+TSCSS  Y
Sbjct: 1   MMRALSILLLSAFIFNLSAAEELSSPLPHAANNFNLSYIQNEASCSYSVVITTSCSSSKY 60

Query: 61  TRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDA 120
           TRDQIS++FGDAYGNQIY PRLDDPS   FERCS D F + GPCAYQICYVYLYRSGPD 
Sbjct: 61  TRDQISIAFGDAYGNQIYAPRLDDPSSGAFERCSSDTFDIYGPCAYQICYVYLYRSGPDG 120

Query: 121 WIPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLL 180
           W P +V I GD+SR VTF YNT IP+DVW+GFNLC  ASSS +       + +I+  ++ 
Sbjct: 121 WKPDSVKIYGDNSRAVTFTYNTFIPSDVWYGFNLCNDASSSYQRYGRRWFMVMIMGLLVF 180

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|645257275|ref|XP_008234339.1| (PREDICTED: uncharacterized protein LOC103333300 [Prunus mume])

HSP 1 Score: 219.2 bits (557), Expect = 6.0e-54
Identity = 105/182 (57.69%), Postives = 134/182 (73.63%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELL--PQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYT 60
           +K +   LL  A LF L EA   +  P+PA+ FN++ IQ+ G CSY+ +I+TSCSS  YT
Sbjct: 2   IKALSLLLLQVAFLFTLSEAKSSIIQPEPAKDFNISQIQKAGKCSYTAIITTSCSSTRYT 61

Query: 61  RDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAW 120
           RDQIS+SFGDAYGNQIY PRLDDPS + FERCS D F + GPCAYQICY+Y+YR+GPD W
Sbjct: 62  RDQISISFGDAYGNQIYAPRLDDPSSKTFERCSTDTFEIYGPCAYQICYLYVYRTGPDGW 121

Query: 121 IPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLL 180
            P  V I G +SR VTF+YNT IP+D+W+GFNLC  ASSS + S+   L+Y+I+  ++ L
Sbjct: 122 KPENVKIYGHNSRAVTFSYNTFIPSDLWYGFNLCNTASSSAQPSAQKWLIYLIVGLLVFL 181

The following BLAST results are available for this feature:

BLAST of Cla006240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P4_CUCSA	1.5e-88	88.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G177980 PE=4 SV=1	[more]
A0A0D2UB84_GOSRA	7.1e-54	66.03	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G282900 PE=4 SV=1	[more]
M5XKE5_PRUPE	1.6e-53	57.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010782mg PE=4 SV=1	[more]
A0A061G0A9_THECC	1.6e-53	71.83	DEAD-box ATP-dependent RNA helicase 7 OS=Theobroma cacao GN=TCM_015015 PE=4 SV=1	[more]
V4S840_9ROSI	2.1e-53	59.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006003mg PE=4 SV=1	[more]

BLAST of Cla006240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077288\|ref\|XP_008439126.1\|	1.3e-88	88.89	PREDICTED: uncharacterized protein LOC103484016 [Cucumis melo]	[more]
gi\|449460778\|ref\|XP_004148122.1\|	2.2e-88	88.33	PREDICTED: uncharacterized protein LOC101207117 [Cucumis sativus]	[more]
gi\|1009122409\|ref\|XP_015877988.1\|	8.4e-56	62.30	PREDICTED: uncharacterized protein LOC107414390 [Ziziphus jujuba]	[more]
gi\|1009122184\|ref\|XP_015877865.1\|	1.4e-55	61.75	PREDICTED: uncharacterized protein LOC107414269 [Ziziphus jujuba]	[more]
gi\|645257275\|ref\|XP_008234339.1\|	6.0e-54	57.69	PREDICTED: uncharacterized protein LOC103333300 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001024	PLAT/LH2_dom
IPR010417	Embryo-specific_ATS3

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU17301	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU45062	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006240	Cla006240.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU45062	WMU45062	transcribed_cluster
WMU17301	WMU17301	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001024	PLAT/LH2 domain	GENE3D	G3DSA:2.60.60.20		coord: 41..142 score: 8.
IPR001024	PLAT/LH2 domain	unknown	SSF49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 38..149 score: 4.32
IPR010417	Embryo-specific 3	PFAM	PF06232	ATS3	coord: 37..152 score: 2.0
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 4..177 score: 5.4
None	No IPR available	PANTHER	PTHR31718:SF8	EMBRYO-SPECIFIC PROTEIN 3	coord: 4..177 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006240	Cucurbita maxima (Rimu)	cmawmB564
Cla006240	Cucurbita maxima (Rimu)	cmawmB567
Cla006240	Cucurbita maxima (Rimu)	cmawmB872
Cla006240	Cucurbita moschata (Rifu)	cmowmB257
Cla006240	Cucurbita moschata (Rifu)	cmowmB310
Cla006240	Cucurbita moschata (Rifu)	cmowmB366
Cla006240	Cucurbita moschata (Rifu)	cmowmB558
Cla006240	Cucurbita moschata (Rifu)	cmowmB859
Cla006240	Melon (DHL92) v3.5.1	mewmB019
Cla006240	Melon (DHL92) v3.5.1	mewmB097
Cla006240	Melon (DHL92) v3.5.1	mewmB461
Cla006240	Watermelon (Charleston Gray)	wcgwmB137
Cla006240	Watermelon (Charleston Gray)	wcgwmB286
Cla006240	Watermelon (Charleston Gray)	wcgwmB334
Cla006240	Cucumber (Chinese Long) v2	cuwmB233
Cla006240	Cucumber (Chinese Long) v2	cuwmB400
Cla006240	Cucumber (Chinese Long) v2	cuwmB403
Cla006240	Cucumber (Chinese Long) v2	cuwmB498
Cla006240	Cucurbita pepo (Zucchini)	cpewmB032
Cla006240	Cucurbita pepo (Zucchini)	cpewmB182
Cla006240	Cucurbita pepo (Zucchini)	cpewmB227
Cla006240	Cucurbita pepo (Zucchini)	cpewmB703
Cla006240	Cucurbita pepo (Zucchini)	cpewmB705
Cla006240	Bottle gourd (USVL1VR-Ls)	lsiwmB020
Cla006240	Bottle gourd (USVL1VR-Ls)	lsiwmB024
Cla006240	Bottle gourd (USVL1VR-Ls)	lsiwmB366
Cla006240	Cucumber (Gy14) v2	cgybwmB217
Cla006240	Cucumber (Gy14) v2	cgybwmB376
Cla006240	Cucumber (Gy14) v2	cgybwmB378
Cla006240	Cucumber (Gy14) v2	cgybwmB465
Cla006240	Melon (DHL92) v3.6.1	medwmB021
Cla006240	Melon (DHL92) v3.6.1	medwmB015
Cla006240	Melon (DHL92) v3.6.1	medwmB095
Cla006240	Melon (DHL92) v3.6.1	medwmB447
Cla006240	Silver-seed gourd	carwmB0098
Cla006240	Silver-seed gourd	carwmB0708
Cla006240	Silver-seed gourd	carwmB0874
Cla006240	Silver-seed gourd	carwmB0920
Cla006240	Silver-seed gourd	carwmB0937
Cla006240	Cucumber (Chinese Long) v3	cucwmB239
Cla006240	Cucumber (Chinese Long) v3	cucwmB427
Cla006240	Cucumber (Chinese Long) v3	cucwmB429
Cla006240	Cucumber (Chinese Long) v3	cucwmB524
Cla006240	Watermelon (97103) v2	wmwmbB193
Cla006240	Watermelon (97103) v2	wmwmbB206
Cla006240	Watermelon (97103) v2	wmwmbB219
Cla006240	Watermelon (97103) v1	wmwmB126
Cla006240	Watermelon (97103) v1	wmwmB140
Cla006240	Cucumber (Gy14) v1	cgywmB479
Cla006240	Cucumber (Gy14) v1	cgywmB549
Cla006240	Cucumber (Gy14) v1	cgywmB662
Cla006240	Cucurbita maxima (Rimu)	cmawmB266
Cla006240	Cucurbita maxima (Rimu)	cmawmB316
Cla006240	Cucurbita maxima (Rimu)	cmawmB373