Cla006240.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006240
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Embryo-specific 3 (AHRD V1 ***- Q2HUA9_MEDTR); contains Interpro domain(s) IPR010417 Embryo-specific 3
Location	Chr5 : 7671189 .. 7672426 (+)
Sequence length	543

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGGGTACTCTGTTTTCTGCTTACCTCCGCCATTCTTTTCCCTCTCTTAGAAGCCACCGAATTGCTACCCCAACCCGCTGAATCCTTTAATTTAACCTATATTCAGGTATCGCCGTTTCGTATTGGTTTTTTCCATTTCCATTTTTGCTGATTCTCAATCTGTTATCTGAGAACGATTCTGTGTTTTCTGATTTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACGAGCTGTTCGTCGCCTTCATACACGAGGGATCAGATCAGTCTTTCATTCGGCGATGCTTATGGAAACCAGGTTTTCCTCGATTAAATCTTCATTTCCCCGCTAATATTATCGGGATAGAAAGCCCTTGGTTTCTCGATCGTTCACGATTTAGCTAATTTCAGATATTCGAAATGGTTGATGAAAAAAATCGGAGTTGAATTTTGCATCTGAGTTTCGGAAAGTTTTCCATTTGATTAGGGATAAAAACGCATAGGCATATTAATATCTTAGGTTAAAGTAATAGATTGGTACATTAACACATCTATTTCTCGAATCTTGATTATTATGGGATCATAGTCTGTTGATTTATATGTTTCAGAACTTCAAATCAGGTATGTATTTATTGGTACATTAACATATCTTAGAAAACATATCCATAGTCATTAGCCTGTTGAGCAATATCTTATAGTCCATTGATATGCCTAGAACTTCCTAAAACATTTTAAAGTTTCTCGAAACATCAGCAGTTCACAATGTGGAAATACAGGAATTTGAAAGAACACCATGTGATAATTCAAAAACAATAAACTTGTCTTCACTTTCAGATAAACTTGGGAATTTAACATGTTACAATTAATCATTGAAGAAGTTTGTTTTGTATAATGAGTGGTGAGTTTTGACTTGTGTACCAGATTTATGTGCCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTGATGATAAATTTGGACTAAATGGACCCTGTGCTTACCAAATATGCTATGTTTATCTTTATCGCTCCGGACCAGATGCCTGGATTCCAACGACAGTGACAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCTTCATCTTCAAACCGTAGTTCAAGTTGCATAGGGCTCTTATATGTCATTTTAGTGTCTATGCTTCTACTTCTCTTGTAA

mRNA sequence

ATGAAAGGGGTACTCTGTTTTCTGCTTACCTCCGCCATTCTTTTCCCTCTCTTAGAAGCCACCGAATTGCTACCCCAACCCGCTGAATCCTTTAATTTAACCTATATTCAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACGAGCTGTTCGTCGCCTTCATACACGAGGGATCAGATCAGTCTTTCATTCGGCGATGCTTATGGAAACCAGATTTATGTGCCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTGATGATAAATTTGGACTAAATGGACCCTGTGCTTACCAAATATGCTATGTTTATCTTTATCGCTCCGGACCAGATGCCTGGATTCCAACGACAGTGACAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCTTCATCTTCAAACCGTAGTTCAAGTTGCATAGGGCTCTTATATGTCATTTTAGTGTCTATGCTTCTACTTCTCTTGTAA

Coding sequence (CDS)

ATGAAAGGGGTACTCTGTTTTCTGCTTACCTCCGCCATTCTTTTCCCTCTCTTAGAAGCCACCGAATTGCTACCCCAACCCGCTGAATCCTTTAATTTAACCTATATTCAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACGAGCTGTTCGTCGCCTTCATACACGAGGGATCAGATCAGTCTTTCATTCGGCGATGCTTATGGAAACCAGATTTATGTGCCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTGATGATAAATTTGGACTAAATGGACCCTGTGCTTACCAAATATGCTATGTTTATCTTTATCGCTCCGGACCAGATGCCTGGATTCCAACGACAGTGACAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCTTCATCTTCAAACCGTAGTTCAAGTTGCATAGGGCTCTTATATGTCATTTTAGTGTCTATGCTTCTACTTCTCTTGTAA

Protein sequence

MKGVLCFLLTSAILFPLLEATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL

Homology

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: A0A0A0L5P4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G177980 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.5e-88
Identity = 159/180 (88.33%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRD 60
           +KGVLC LLTSAILF  LEATELLP+PAESFNLTYIQQLGSCSYSVVISTSC SP+YTRD
Sbjct: 3   IKGVLCLLLTSAILFSFLEATELLPKPAESFNLTYIQQLGSCSYSVVISTSCLSPAYTRD 62

Query: 61  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIP 120
           QISLSFGDAYGNQIYVPRLDDPSRRIFERCS D FG+NGPCAYQICYVYLYR+GPDAWIP
Sbjct: 63  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRTGPDAWIP 122

Query: 121 TTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL 180
           TTV ISGD+SRPVTFNYNTAIP DVWFGFNLCGH SSSNR SSCIG  YVI+VS++LLLL
Sbjct: 123 TTVRISGDNSRPVTFNYNTAIPGDVWFGFNLCGHPSSSNRISSCIGWFYVIIVSIILLLL 182

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: A0A0D2UB84_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G282900 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.1e-54
Identity = 103/156 (66.03%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 25  PQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQIYVPRLDDPSR 84
           PQ  ESFN++YIQ LGSCSYSVV +TSCSS SYTRDQIS++FGDAYGNQIYVPRLDDP+ 
Sbjct: 57  PQAFESFNVSYIQNLGSCSYSVVFTTSCSSTSYTRDQISIAFGDAYGNQIYVPRLDDPAS 116

Query: 85  RIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAIPND 144
           R FE+CS DKF + GPCAYQICYVYLYR+GPD W P  V I G +SR VTF Y+T IP D
Sbjct: 117 RAFEQCSSDKFEIKGPCAYQICYVYLYRTGPDGWKPEQVKIYGYNSRAVTFYYDTFIPGD 176

Query: 145 VWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL 181
            W+GFN C  ASSS+R       L+V+L  +L  L+
Sbjct: 177 TWYGFNYCNSASSSHRWIGQTSFLFVVLWFVLYALI 212

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: M5XKE5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010782mg PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-53
Identity = 105/182 (57.69%), Postives = 133/182 (73.08%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELL--PQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYT 60
           +K +   LL  A LF L EA   +  P+PA+ FN++ IQ  G+CSY+ +I+TSCSS  YT
Sbjct: 55  IKALSLLLLQVAFLFTLSEAKSSIIQPEPAKDFNISQIQNAGTCSYTAIITTSCSSTRYT 114

Query: 61  RDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAW 120
           RDQIS+SFGDAYGNQIY PRLDD S R FERCS D F + GPCAYQICY+Y+YR+GPD W
Sbjct: 115 RDQISISFGDAYGNQIYAPRLDDASSRTFERCSTDTFEIYGPCAYQICYLYVYRTGPDGW 174

Query: 121 IPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLL 180
            P  V I G +SR VTF+YNT IP+D+W+GFNLC  ASSS + S+   L+Y+I+  ++ L
Sbjct: 175 KPENVKIYGHNSRAVTFSYNTFIPSDLWYGFNLCNTASSSAQPSAQKWLIYLIVGLLVFL 234

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: A0A061G0A9_THECC (DEAD-box ATP-dependent RNA helicase 7 OS=Theobroma cacao GN=TCM_015015 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-53
Identity = 102/142 (71.83%), Postives = 115/142 (80.99%), Query Frame = 1


Query: 19  EATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQIYVPR 78
           E+    PQ  ESFN++YIQ LGSCSYSVVISTSCSS SYTRDQIS++FGDAYGNQIYVPR
Sbjct: 234 ESISQKPQAFESFNVSYIQNLGSCSYSVVISTSCSSTSYTRDQISIAFGDAYGNQIYVPR 293

Query: 79  LDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYN 138
           LDDPS R FE+CS D F + GPCAYQICYVYLYRSGPD W P +V I G +SR VTF Y+
Sbjct: 294 LDDPSTRTFEQCSSDTFEIYGPCAYQICYVYLYRSGPDGWKPESVKIYGYNSRAVTFYYD 353

Query: 139 TAIPNDVWFGFNLCGHASSSNR 161
           T IP D+W+GFN C  ASSS+R
Sbjct: 354 TFIPGDIWYGFNYCNTASSSHR 375

[Close]

BLAST of Cla006240 vs. TrEMBL
Match: V4S840_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006003mg PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-53
Identity = 110/184 (59.78%), Postives = 131/184 (71.20%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEAT----ELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPS 60
           MK     LL  A  F L EA     +L P+  ESFN++YIQ LGSCSY+VVI+TSCSS  
Sbjct: 1   MKIAAPILLLLAFAFTLSEAETTSLQLKPRAFESFNVSYIQNLGSCSYTVVITTSCSSSK 60

Query: 61  YTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPD 120
           YTRDQIS++FGDAYGNQIY PRLDDPS   FE CS D F + GPCAYQICYVYLYR+GPD
Sbjct: 61  YTRDQISIAFGDAYGNQIYAPRLDDPSTDAFESCSSDTFEIRGPCAYQICYVYLYRTGPD 120

Query: 121 AWIPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSML 180
            W P +V I G +SR V+F YNT IP+D+W+GFNLC  ASS+++       +YVIL  +L
Sbjct: 121 GWKPESVKIYGANSRAVSFYYNTFIPSDIWYGFNLCRSASSAHQQHVPRWSVYVILGLLL 180

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|659077288|ref|XP_008439126.1| (PREDICTED: uncharacterized protein LOC103484016 [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 1.3e-88
Identity = 160/180 (88.89%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRD 60
           +KGVLC LLTSAILFP LEATELLP+PAESFNLTYIQQLGSCSYSVVISTSC SP+YTRD
Sbjct: 3   IKGVLCLLLTSAILFPSLEATELLPKPAESFNLTYIQQLGSCSYSVVISTSCLSPTYTRD 62

Query: 61  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIP 120
           QISLSFGDAYGNQIYVPRLDDPSRRIFERCS D FG+NGPCAYQICYVYLYR+GPDAWIP
Sbjct: 63  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRTGPDAWIP 122

Query: 121 TTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL 180
           TTVTISG +SRPVTFNYNTAIP+DVWFGFNLCGH SSSN  S CIG  YVILVS+LLLLL
Sbjct: 123 TTVTISGHNSRPVTFNYNTAIPSDVWFGFNLCGHPSSSNHISGCIGCFYVILVSILLLLL 182

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|449460778|ref|XP_004148122.1| (PREDICTED: uncharacterized protein LOC101207117 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 2.2e-88
Identity = 159/180 (88.33%), Postives = 168/180 (93.33%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELLPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYTRD 60
           +KGVLC LLTSAILF  LEATELLP+PAESFNLTYIQQLGSCSYSVVISTSC SP+YTRD
Sbjct: 3   IKGVLCLLLTSAILFSFLEATELLPKPAESFNLTYIQQLGSCSYSVVISTSCLSPAYTRD 62

Query: 61  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAWIP 120
           QISLSFGDAYGNQIYVPRLDDPSRRIFERCS D FG+NGPCAYQICYVYLYR+GPDAWIP
Sbjct: 63  QISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRTGPDAWIP 122

Query: 121 TTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLLLL 180
           TTV ISGD+SRPVTFNYNTAIP DVWFGFNLCGH SSSNR SSCIG  YVI+VS++LLLL
Sbjct: 123 TTVRISGDNSRPVTFNYNTAIPGDVWFGFNLCGHPSSSNRISSCIGWFYVIIVSIILLLL 182

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|1009122409|ref|XP_015877988.1| (PREDICTED: uncharacterized protein LOC107414390 [Ziziphus jujuba])

HSP 1 Score: 225.3 bits (573), Expect = 8.4e-56
Identity = 114/183 (62.30%), Postives = 131/183 (71.58%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATEL---LPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSY 60
           M   L  LL SA +F L  A EL   LP  A +FNL+YIQ   SCSYSVVI+TSCSS  Y
Sbjct: 1   MMRALSILLLSAFIFNLSAAEELSSPLPHAANNFNLSYIQNEASCSYSVVITTSCSSSKY 60

Query: 61  TRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDA 120
           TRDQIS++FGDAYGNQIY PRLDDPS   FERCS D F + GPCAYQICYVYLYRSGPD 
Sbjct: 61  TRDQISIAFGDAYGNQIYAPRLDDPSSGAFERCSSDTFDIYGPCAYQICYVYLYRSGPDG 120

Query: 121 WIPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLL 180
           W P +V I GD+SR VTF YNT IP+DVW+GFNLC  ASSS +       + +IL  ++ 
Sbjct: 121 WKPESVKIYGDNSRAVTFTYNTFIPSDVWYGFNLCNDASSSYQRYGRRWFMVMILGLLVF 180

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|1009122184|ref|XP_015877865.1| (PREDICTED: uncharacterized protein LOC107414269 [Ziziphus jujuba])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 113/183 (61.75%), Postives = 131/183 (71.58%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATEL---LPQPAESFNLTYIQQLGSCSYSVVISTSCSSPSY 60
           M   L  LL SA +F L  A EL   LP  A +FNL+YIQ   SCSYSVVI+TSCSS  Y
Sbjct: 1   MMRALSILLLSAFIFNLSAAEELSSPLPHAANNFNLSYIQNEASCSYSVVITTSCSSSKY 60

Query: 61  TRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDA 120
           TRDQIS++FGDAYGNQIY PRLDDPS   FERCS D F + GPCAYQICYVYLYRSGPD 
Sbjct: 61  TRDQISIAFGDAYGNQIYAPRLDDPSSGAFERCSSDTFDIYGPCAYQICYVYLYRSGPDG 120

Query: 121 WIPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLL 180
           W P +V I GD+SR VTF YNT IP+DVW+GFNLC  ASSS +       + +I+  ++ 
Sbjct: 121 WKPDSVKIYGDNSRAVTFTYNTFIPSDVWYGFNLCNDASSSYQRYGRRWFMVMIMGLLVF 180

[Close]

BLAST of Cla006240 vs. NCBI nr
Match: gi|645257275|ref|XP_008234339.1| (PREDICTED: uncharacterized protein LOC103333300 [Prunus mume])

HSP 1 Score: 219.2 bits (557), Expect = 6.0e-54
Identity = 105/182 (57.69%), Postives = 134/182 (73.63%), Query Frame = 1


Query: 1   MKGVLCFLLTSAILFPLLEATELL--PQPAESFNLTYIQQLGSCSYSVVISTSCSSPSYT 60
           +K +   LL  A LF L EA   +  P+PA+ FN++ IQ+ G CSY+ +I+TSCSS  YT
Sbjct: 2   IKALSLLLLQVAFLFTLSEAKSSIIQPEPAKDFNISQIQKAGKCSYTAIITTSCSSTRYT 61

Query: 61  RDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSDDKFGLNGPCAYQICYVYLYRSGPDAW 120
           RDQIS+SFGDAYGNQIY PRLDDPS + FERCS D F + GPCAYQICY+Y+YR+GPD W
Sbjct: 62  RDQISISFGDAYGNQIYAPRLDDPSSKTFERCSTDTFEIYGPCAYQICYLYVYRTGPDGW 121

Query: 121 IPTTVTISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGLLYVILVSMLLL 180
            P  V I G +SR VTF+YNT IP+D+W+GFNLC  ASSS + S+   L+Y+I+  ++ L
Sbjct: 122 KPENVKIYGHNSRAVTFSYNTFIPSDLWYGFNLCNTASSSAQPSAQKWLIYLIVGLLVFL 181

The following BLAST results are available for this feature:

BLAST of Cla006240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P4_CUCSA	1.5e-88	88.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G177980 PE=4 SV=1	[more]
A0A0D2UB84_GOSRA	7.1e-54	66.03	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G282900 PE=4 SV=1	[more]
M5XKE5_PRUPE	1.6e-53	57.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010782mg PE=4 SV=1	[more]
A0A061G0A9_THECC	1.6e-53	71.83	DEAD-box ATP-dependent RNA helicase 7 OS=Theobroma cacao GN=TCM_015015 PE=4 SV=1	[more]
V4S840_9ROSI	2.1e-53	59.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006003mg PE=4 SV=1	[more]

BLAST of Cla006240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077288\|ref\|XP_008439126.1\|	1.3e-88	88.89	PREDICTED: uncharacterized protein LOC103484016 [Cucumis melo]	[more]
gi\|449460778\|ref\|XP_004148122.1\|	2.2e-88	88.33	PREDICTED: uncharacterized protein LOC101207117 [Cucumis sativus]	[more]
gi\|1009122409\|ref\|XP_015877988.1\|	8.4e-56	62.30	PREDICTED: uncharacterized protein LOC107414390 [Ziziphus jujuba]	[more]
gi\|1009122184\|ref\|XP_015877865.1\|	1.4e-55	61.75	PREDICTED: uncharacterized protein LOC107414269 [Ziziphus jujuba]	[more]
gi\|645257275\|ref\|XP_008234339.1\|	6.0e-54	57.69	PREDICTED: uncharacterized protein LOC103333300 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001024	PLAT/LH2_dom
IPR010417	Embryo-specific_ATS3

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla006240	Cla006240	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla006240	Cla006240.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla006240.1.cds1	Cla006240.1.cds1	CDS
Cla006240.1.cds2	Cla006240.1.cds2	CDS
Cla006240.1.cds3	Cla006240.1.cds3	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001024	PLAT/LH2 domain	GENE3D	G3DSA:2.60.60.20		coord: 41..142 score: 8.
IPR001024	PLAT/LH2 domain	unknown	SSF49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 38..149 score: 4.32
IPR010417	Embryo-specific 3	PFAM	PF06232	ATS3	coord: 37..152 score: 2.0
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 4..177 score: 5.4
None	No IPR available	PANTHER	PTHR31718:SF8	EMBRYO-SPECIFIC PROTEIN 3	coord: 4..177 score: 5.4