WMU45062 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU45062
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Embryo-specific family protein
Location	Chr5 : 7671086 .. 7672521 (+)
Sequence length	762

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTGTTCCCCTTCAACCCTTCAACTAAATACAACGATTCATCCGTCTCTGTAGTTTTTCTAAAATTCTTCTTCTCCAAAACACTCCTCAACGCTAGAGCCAAAGAAAAGGGAAATGAAAGGGGTACTCTGTTTTCTGCTTACCTCCGCCATTCTTTTCCCTCTCTTAGAAGCCACCGAATTGCTACCCCAACCCGCTGAATCCTTTAATTTAACCTATATTCAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACGAGCTGTTCGTCGCCTTCATACACGAGGGATCAGATCAGTCTTTCATTCGGCGATGCTTATGGAAAACCAGATTTTATGTGCCAAAGGCTTGATGGACCCAGTCTAGAAGGATATTTGAAAGATGCTCTGATGATAAAATTTGGACTAAAATGGACCCCTGTGCTTACCAAATATGCTATGTTTATCTTTATCGCTCCGGACCAGATGCCTGGATTCCAACGACAGTGACAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGGTGTATGGTTCGGGTTTAACTTGTGTGGTCATGCTTCATCTTCAAACCGTAAGTTCAAGTTGCATAGGGCTCTTATATGTCATTTTAGTTGTCTATGCTTCTACTTCTCTTGTAATTTTGTTGCTATGTCATGATGCTGTTCATGTTCTATCCTTGATAAGAATACATTTTGTATGTAGCACTTTTAGTTATAGAGGACATGGATATCTAAC

Library


Library category	ESTs
watermelon fruit 18d library	2
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU45062 vs. TAIR10
Match: AT5G62200.1 (AT5G62200.1 Embryo-specific protein 3, (ATS3))

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-21
Identity = 46/78 (58.97%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 364 SRRIFERCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAI 423
           S + FE+CS D       PC YQICYVYLYRSGPD WIP TV I    S+ VTF YNT +
Sbjct: 89  STKTFEQCSSDTFQIN-GPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYV 148

Query: 424 PNGVWFGFNLCGHASSSN 483
           P  VW+GFN C  AS SN
Sbjct: 149 PESVWYGFNYCNSASDSN 165

Query: 484  543
           
Sbjct: 209  165

Query: 544  598
           
Sbjct: 269  165

HSP 2 Score: 39.3 bits (90), Expect = 4.2e-03
Identity = 25/65 (38.46%), Postives = 30/65 (46.15%), Query Frame = 2


Query: 185 PQPAESFNLTYIQQLGXXXXXXXXXXXXXXXXXX-RDQISLSFGDAYGKPDFMCQRLDGP 244
           P  AESFN++ IQ+LG                   RDQIS++FGD YG       RLD P
Sbjct: 30  PHVAESFNVSLIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGN-QIYAPRLDDP 89

Query: 245 SLEGY 304
           S + +
Sbjct: 90  STKTF 93

Query: 305  364
           
Sbjct: 150  93

Query: 365  377
           
Sbjct: 210  93

[Close]

BLAST of WMU45062 vs. TAIR10
Match: AT2G41475.1 (AT2G41475.1 Embryo-specific protein 3, (ATS3))

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-15
Identity = 38/80 (47.50%), Postives = 44/80 (55.00%), Query Frame = 1


Query: 364 SRRIFERCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAI 423
           S R FE+CS D  +    PC   +CY+YL R G D W P  V I G   R VTF YN  +
Sbjct: 89  SSRTFEKCSSDT-YKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSVTFYYNLFL 148

Query: 424 PNGVWFGFNLC---GHASSS 483
           PN VW+GFN+C   G+  SS
Sbjct: 149 PNSVWYGFNVCNGIGNTKSS 167

Query: 484  543
           
Sbjct: 209  167

Query: 544  595
           
Sbjct: 269  167

HSP 2 Score: 32.3 bits (72), Expect = 5.2e-01
Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 2


Query: 287 RDQISLSFGDAYGKPDFMCQRLDGPSLEGYLK 346
           RD+IS+SFGD YG   ++ +RLD PS   + K
Sbjct: 65  RDKISISFGDVYGNEVYV-KRLDDPSSRTFEK 95

Query: 347  383
           
Sbjct: 125  95

[Close]

BLAST of WMU45062 vs. TAIR10
Match: AT5G62210.1 (AT5G62210.1 Embryo-specific protein 3, (ATS3))

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-12
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 1


Query: 376 FERCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAIPNGV 435
           FE+CS D    K   C   IC VY+YRSG D WIP TV I  + S+ V F++N  +P  +
Sbjct: 87  FEKCSSDTFQVK-GKCLNTICSVYIYRSGTDGWIPETVEIYKEGSKSVKFDFNKNVPENI 146

Query: 436 WFGFNLCGH 495
           W+G N C +
Sbjct: 147 WYGNNYCNN 154

Query: 496  555
           
Sbjct: 207  154

Query: 556  583
           
Sbjct: 267  154

[Close]

BLAST of WMU45062 vs. TAIR10
Match: AT5G07190.1 (AT5G07190.1 seed gene 3)

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-06
Identity = 20/66 (30.30%), Postives = 35/66 (53.03%), Query Frame = 1


Query: 382 RCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAIPN-GVW 441
           +CS +    +       IC +Y+ R+GPD W+P ++ I  + S+ V F+++ ++P    W
Sbjct: 83  KCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTW 142

Query: 442 FGFNLC 501
           +G N C
Sbjct: 143 YGHNNC 148

Query: 502  561
           
Sbjct: 203  148

Query: 562  577
           
Sbjct: 263  148

[Close]

BLAST of WMU45062 vs. NCBI nr
Match: gi|449460778|ref|XP_004148122.1| (PREDICTED: uncharacterized protein LOC101207117 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-31
Identity = 68/90 (75.56%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 331 RFYVPKA*WTQSRRIFERCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHS 390
           + YVP+     SRRIFERCS D       PCAYQICYVYLYR+GPDAWIPTTV ISGD+S
Sbjct: 75  QIYVPRLD-DPSRRIFERCSSDTFGIN-GPCAYQICYVYLYRTGPDAWIPTTVRISGDNS 134

Query: 391 RPVTFNYNTAIPNGVWFGFNLCGHASSSNR 450
           RPVTFNYNTAIP  VWFGFNLCGH SSSNR
Sbjct: 135 RPVTFNYNTAIPGDVWFGFNLCGHPSSSNR 162

Query: 451  510
           
Sbjct: 195  162

Query: 511  570
           
Sbjct: 255  162

Query: 571  601
           
Sbjct: 315  162

[Close]

BLAST of WMU45062 vs. NCBI nr
Match: gi|659077288|ref|XP_008439126.1| (PREDICTED: uncharacterized protein LOC103484016 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 331 RFYVPKA*WTQSRRIFERCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHS 390
           + YVP+     SRRIFERCS D       PCAYQICYVYLYR+GPDAWIPTTVTISG +S
Sbjct: 75  QIYVPRLD-DPSRRIFERCSSDTFGIN-GPCAYQICYVYLYRTGPDAWIPTTVTISGHNS 134

Query: 391 RPVTFNYNTAIPNGVWFGFNLCGHASSSN 450
           RPVTFNYNTAIP+ VWFGFNLCGH SSSN
Sbjct: 135 RPVTFNYNTAIPSDVWFGFNLCGHPSSSN 161

Query: 451  510
           
Sbjct: 195  161

Query: 511  570
           
Sbjct: 255  161

Query: 571  598
           
Sbjct: 315  161

[Close]

BLAST of WMU45062 vs. NCBI nr
Match: gi|1009122184|ref|XP_015877865.1| (PREDICTED: uncharacterized protein LOC107414269 [Ziziphus jujuba])

HSP 1 Score: 111.3 bits (277), Expect = 2.5e-21
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 376 FERCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAIPNGV 435
           FERCS D  +    PCAYQICYVYLYRSGPD W P +V I GD+SR VTF YNT IP+ V
Sbjct: 90  FERCSSDT-FDIYGPCAYQICYVYLYRSGPDGWKPDSVKIYGDNSRAVTFTYNTFIPSDV 149

Query: 436 WFGFNLCGHASSSNRKF 495
           W+GFNLC  ASSS +++
Sbjct: 150 WYGFNLCNDASSSYQRY 165

Query: 496  555
           
Sbjct: 210  165

Query: 556  607
           
Sbjct: 270  165

[Close]

BLAST of WMU45062 vs. NCBI nr
Match: gi|1009122409|ref|XP_015877988.1| (PREDICTED: uncharacterized protein LOC107414390 [Ziziphus jujuba])

HSP 1 Score: 111.3 bits (277), Expect = 2.5e-21
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 376 FERCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAIPNGV 435
           FERCS D  +    PCAYQICYVYLYRSGPD W P +V I GD+SR VTF YNT IP+ V
Sbjct: 90  FERCSSDT-FDIYGPCAYQICYVYLYRSGPDGWKPESVKIYGDNSRAVTFTYNTFIPSDV 149

Query: 436 WFGFNLCGHASSSNRKF 495
           W+GFNLC  ASSS +++
Sbjct: 150 WYGFNLCNDASSSYQRY 165

Query: 496  555
           
Sbjct: 210  165

Query: 556  607
           
Sbjct: 270  165

[Close]

BLAST of WMU45062 vs. NCBI nr
Match: gi|694446992|ref|XP_009349719.1| (PREDICTED: uncharacterized protein LOC103941250 [Pyrus x bretschneideri])

HSP 1 Score: 109.4 bits (272), Expect = 9.5e-21
Identity = 52/87 (59.77%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 364 SRRIFERCSDDKIWTKMDPCAYQICYVYLYRSGPDAWIPTTVTISGDHSRPVTFNYNTAI 423
           S R FERCS D  +    PCAYQICY+Y+YRSGPD W P  V I G +SR VTF+YNT I
Sbjct: 114 SSRTFERCSTDT-FEIYGPCAYQICYLYVYRSGPDGWKPENVKIYGHNSRAVTFSYNTFI 173

Query: 424 PNGVWFGFNLCGHASSSNRKFKLHRAL 483
           PN +W+GFN C  ASSS RK    R L
Sbjct: 174 PNDLWYGFNWCNTASSSARKSAHRRPL 199

Query: 484  543
           
Sbjct: 234  199

Query: 544  603
           
Sbjct: 294  199

Query: 604  625
           
Sbjct: 354  199

The following BLAST results are available for this feature:

BLAST of WMU45062 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62200.1	1.2e-21	58.97	Embryo-specific protein 3, (ATS3)	[more]
AT2G41475.1	6.3e-15	47.50	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	1.7e-12	44.93	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	2.4e-06	30.30	seed gene 3	[more]

BLAST of WMU45062 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460778\|ref\|XP_004148122.1\|	2.7e-31	75.56	PREDICTED: uncharacterized protein LOC101207117 [Cucumis sativus]	[more]
gi\|659077288\|ref\|XP_008439126.1\|	1.0e-30	75.28	PREDICTED: uncharacterized protein LOC103484016 [Cucumis melo]	[more]
gi\|1009122184\|ref\|XP_015877865.1\|	2.5e-21	64.94	PREDICTED: uncharacterized protein LOC107414269 [Ziziphus jujuba]	[more]
gi\|1009122409\|ref\|XP_015877988.1\|	2.5e-21	64.94	PREDICTED: uncharacterized protein LOC107414390 [Ziziphus jujuba]	[more]
gi\|694446992\|ref\|XP_009349719.1\|	9.5e-21	59.77	PREDICTED: uncharacterized protein LOC103941250 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001024	PLAT/LH2_dom
IPR010417	Embryo-specific_ATS3

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla006240	Cla006240	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0085422	S2_0085422	EST
S2_0162883	S2_0162883	EST
S3_0160026	S3_0160026	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001024	PLAT/LH2 domain	unknown	SSF49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 38..150 score: 5.2
IPR010417	Embryo-specific 3	PFAM	PF06232	ATS3	coord: 37..155 score: 2.7
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 7..180 score: 7.1
None	No IPR available	PANTHER	PTHR31718:SF6	SUBFAMILY NOT NAMED	coord: 7..180 score: 7.1