Cla006098 (gene) Watermelon (97103) v1

Overview
NameCla006098
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 13153735 .. 13154280 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCTGTTGCTGCCGCTGCCCTAGTTGTTCAAACCGCCGCCGCCGCTGCTAGTTCTTCAACCCTAGTGCCAATGATGAGATCTGCGTCTGCCGTCCACCCTAGCGCCGCCACAGGCTCATCTTCTCAAGCGCCGTTACTGGGTTTTCGTGGGATGCCGAGTGCTGCTGTCGTCCAACCTAGCGTCACGGGTTCCACCCTTCAAGAGCCGTTGTTGGTTTTTCGTGGGACACCAAATGCTTTGTTTCCAGGTGAGGTTGTCGACGCCAGCTTTTTCCACGAGGTCACCGGTACTTACCCTTTACCTCCGACCGCCACTGCCACTGCCGGAGTCTCTCGCGATGCTGCCGACAACCAATATGAACAACACAGATCGGTTGGCCTTTCTTTGGTTATGATTCAACAACTACTTGCGAATCTCCAAGCGAGTTTTCAACAAAAAATCGCTGCCTTTGGGCCAACCCTTGACGCTTCCACCAACCTCAATCAAAGTGCAGTAAATTCAGGTATCCAGTCAGATTTACCGATGTATCAGAGAATCTGA

mRNA sequence

ATGGGATCTGTTGCTGCCGCTGCCCTAGTTGTTCAAACCGCCGCCGCCGCTGCTAGTTCTTCAACCCTAGTGCCAATGATGAGATCTGCGTCTGCCGTCCACCCTAGCGCCGCCACAGGCTCATCTTCTCAAGCGCCGTTACTGGGTTTTCGTGGGATGCCGAGTGCTGCTGTCGTCCAACCTAGCGTCACGGGTTCCACCCTTCAAGAGCCGTTGTTGGTTTTTCGTGGGACACCAAATGCTTTGTTTCCAGGTGAGGTTGTCGACGCCAGCTTTTTCCACGAGGTCACCGGTACTTACCCTTTACCTCCGACCGCCACTGCCACTGCCGGAGTCTCTCGCGATGCTGCCGACAACCAATATGAACAACACAGATCGGTTGGCCTTTCTTTGGTTATGATTCAACAACTACTTGCGAATCTCCAAGCGAGTTTTCAACAAAAAATCGCTGCCTTTGGGCCAACCCTTGACGCTTCCACCAACCTCAATCAAAGTGCAGTAAATTCAGGTATCCAGTCAGATTTACCGATGTATCAGAGAATCTGA

Coding sequence (CDS)

ATGGGATCTGTTGCTGCCGCTGCCCTAGTTGTTCAAACCGCCGCCGCCGCTGCTAGTTCTTCAACCCTAGTGCCAATGATGAGATCTGCGTCTGCCGTCCACCCTAGCGCCGCCACAGGCTCATCTTCTCAAGCGCCGTTACTGGGTTTTCGTGGGATGCCGAGTGCTGCTGTCGTCCAACCTAGCGTCACGGGTTCCACCCTTCAAGAGCCGTTGTTGGTTTTTCGTGGGACACCAAATGCTTTGTTTCCAGGTGAGGTTGTCGACGCCAGCTTTTTCCACGAGGTCACCGGTACTTACCCTTTACCTCCGACCGCCACTGCCACTGCCGGAGTCTCTCGCGATGCTGCCGACAACCAATATGAACAACACAGATCGGTTGGCCTTTCTTTGGTTATGATTCAACAACTACTTGCGAATCTCCAAGCGAGTTTTCAACAAAAAATCGCTGCCTTTGGGCCAACCCTTGACGCTTCCACCAACCTCAATCAAAGTGCAGTAAATTCAGGTATCCAGTCAGATTTACCGATGTATCAGAGAATCTGA

Protein sequence

MGSVAAAALVVQTAAAAASSSTLVPMMRSASAVHPSAATGSSSQAPLLGFRGMPSAAVVQPSVTGSTLQEPLLVFRGTPNALFPGEVVDASFFHEVTGTYPLPPTATATAGVSRDAADNQYEQHRSVGLSLVMIQQLLANLQASFQQKIAAFGPTLDASTNLNQSAVNSGIQSDLPMYQRI
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU41546watermelon EST collection version 2.0transcribed_cluster
WMU64657watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006098Cla006098.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU41546WMU41546transcribed_cluster
WMU64657WMU64657transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006098ClCG04G003130Watermelon (Charleston Gray)wcgwmB257
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006098Cucurbita pepo (Zucchini)cpewmB497
Cla006098Bottle gourd (USVL1VR-Ls)lsiwmB149
Cla006098Cucumber (Gy14) v2cgybwmB312
Cla006098Silver-seed gourdcarwmB0471
Cla006098Watermelon (97103) v2wmwmbB293
Cla006098Cucumber (Gy14) v1cgywmB325
Cla006098Cucurbita maxima (Rimu)cmawmB834
Cla006098Cucurbita moschata (Rifu)cmowmB822
Cla006098Cucumber (Chinese Long) v2cuwmB336