Cla005623 (gene) Watermelon (97103) v1

Overview
NameCla005623
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionEthylene-responsive transcription factor 4 (AHRD V1 *-** ERF4_TOBAC); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding
LocationChr10 : 2710833 .. 2711363 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCCTCTTCACAGATTCCAGTTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCTTCCCCGATCTGTTCCTTGA

mRNA sequence

ATGGAAGATCCTCTTCACAGATTCCAGTTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCTTCCCCGATCTGTTCCTTGA

Coding sequence (CDS)

ATGGAAGATCCTCTTCACAGATTCCAGTTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCTTCCCCGATCTGTTCCTTGA

Protein sequence

MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDLPRSVP
Homology
[Close]
BLAST of Cla005623 vs. Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.1e-39
Identity = 85/161 (52.80%), Postives = 108/161 (67.08%), Query Frame = 1 

Query: 14  SSSSSSSDIKNCIKEKNS--KKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWL 73
           +S S+ S   + ++++N   KK  +++ GKHP YRGVR R WGKWVSEIREP+KKSRIWL
Sbjct: 3   ASESTKSWEASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWL 62

Query: 74  GTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTN 133
           GTF +PEMAARAHDVAA +IKG SA LNFP+LA   PRP+S SP+DI+ AA KAA   T+
Sbjct: 63  GTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETS 122

Query: 134 NLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDLP 173
               S+     +S+  S    +   SSA  ++  GEI +LP
Sbjct: 123 QSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELP 163

[Close]
BLAST of Cla005623 vs. Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.5e-38
Identity = 79/118 (66.95%), Postives = 91/118 (77.12%), Query Frame = 1 

Query: 14  SSSSSSSDIKNCIKEKNSKKVKLEND----GKHPTYRGVRMRQWGKWVSEIREPKKKSRI 73
           SS  S  ++++ + EK  K  K +N+     K P +RGVRMRQWGKWVSEIREP+KKSRI
Sbjct: 5   SSHESQRNLRSPVPEKTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRI 64

Query: 74  WLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAAS 128
           WLGTFSTPEMAARAHDVAA  IKG SA+LNFPELA+ LPRPAS+ PKDI+ AAA AA+
Sbjct: 65  WLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAA 122

[Close]
BLAST of Cla005623 vs. Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.5e-38
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 1 

Query: 3   DPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLEND-----GKHPTYRGVRMRQWGKWV 62
           D   RFQ       S +   +  +K K  KK   ++D      KHP +RGVRMRQWGKWV
Sbjct: 4   DDCRRFQ------DSPAQTTERRVKYKPKKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWV 63

Query: 63  SEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKD 122
           SEIREPKKKSRIWLGTFST EMAARAHDVAA  IKG SA+LNFPELA+ LPRPAS+ PKD
Sbjct: 64  SEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKD 123

Query: 123 IRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDLP 173
           I+AAAA AA+    ++      D   S+      +  + S A+ A S     DLP
Sbjct: 124 IQAAAAAAAAAVAIDM------DVETSSPSPSPTVTETSSPAMIALSDDAFSDLP 166

[Close]
BLAST of Cla005623 vs. Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-37
Identity = 94/176 (53.41%), Postives = 109/176 (61.93%), Query Frame = 1 

Query: 14  SSSSSSSDIKNCIKEKNSKK----------VKLENDG----------------KHPTYRG 73
           SSSSSSS   N I+E NSK+          V +E+D                 KHPTYRG
Sbjct: 43  SSSSSSSTNSNFIEEDNSKRKASRRSLSSLVSVEDDDDQNGGGGKRRKTNGGDKHPTYRG 102

Query: 74  VRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRL 133
           VRMR WGKWVSEIREP+KKSRIWLGT+ T EMAARAHDVAA  IKG +AYLNFP+LA  L
Sbjct: 103 VRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGEL 162

Query: 134 PRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAK 164
           PRP ++SPKDI+AAA+ AA     N  DS +D   +  A+    +   PS AV A+
Sbjct: 163 PRPVTNSPKDIQAAASLAAV----NWQDSVNDVSNSEVAEI---VEAEPSRAVVAQ 211

[Close]
BLAST of Cla005623 vs. Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-37
Identity = 90/167 (53.89%), Postives = 104/167 (62.28%), Query Frame = 1 

Query: 14  SSSSSSSDIKNCIKEKNSKKVKLEND-GKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLG 73
           S S S SD      E++ KK K   D GKHP YRGVRMR WGKWVSEIREP+KKSRIWLG
Sbjct: 21  SESDSVSDKSKA--EQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG 80

Query: 74  TFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNN 133
           TF TPEMAARAHDVAA +IKG +A LNFPELA   PRP S SP+DI+ AA KAA      
Sbjct: 81  TFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTT 140

Query: 134 LLDSTHDDDLNSAAKSDL-------NLNRSPSSAVAAKSSGEIDDLP 173
              S+     + ++ S L       +L+R+ S  +     GEI +LP
Sbjct: 141 SFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEEL-----GEIVELP 180

[Close]
BLAST of Cla005623 vs. TrEMBL
Match: A0A0A0L472_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G019400 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.9e-67
Identity = 137/170 (80.59%), Postives = 144/170 (84.71%), Query Frame = 1 

Query: 1   MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEI 60
           MEDPL RFQ HSQS SSSSSDIKNCIK+K SKKVK+ ND KHPTYRGVRMRQWGKWVSEI
Sbjct: 1   MEDPLQRFQLHSQS-SSSSSDIKNCIKQKASKKVKIGNDDKHPTYRGVRMRQWGKWVSEI 60

Query: 61  REPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRA 120
           REPKKKSRIWLGTFST EMAARAHDVAA+TIKGHSAYLNFPELAHRLPRPASSSPKDIRA
Sbjct: 61  REPKKKSRIWLGTFSTSEMAARAHDVAAKTIKGHSAYLNFPELAHRLPRPASSSPKDIRA 120

Query: 121 AAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDD 171
           AAAKAA F          +D+ N  AKS++NLN   SSAVA KS GEIDD
Sbjct: 121 AAAKAALF----------NDEQNPGAKSEMNLNCCGSSAVAVKSGGEIDD 159

[Close]
BLAST of Cla005623 vs. TrEMBL
Match: A0A140WWF4_LOTCO (AP2/ERF OS=Lotus corniculatus GN=ERF011 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.9e-44
Identity = 99/163 (60.74%), Postives = 117/163 (71.78%), Query Frame = 1 

Query: 12  SQSSSSSSSDIKNCIKE-KNSKK-VKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRI 71
           + SSSSS+ ++ N +K+ KN KK VK  NDGKHPTYRGVRMRQWGKWVSEIREP+KKSRI
Sbjct: 28  TSSSSSSAEEVTNMVKKNKNEKKGVKRSNDGKHPTYRGVRMRQWGKWVSEIREPRKKSRI 87

Query: 72  WLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFS 131
           WLGTF TP+MAARAHDVAA TIKG  AYLNFPELA  LPRPAS+SPKDI+ AAAKAA+  
Sbjct: 88  WLGTFPTPDMAARAHDVAALTIKGSGAYLNFPELAAELPRPASTSPKDIQVAAAKAAATD 147

Query: 132 TNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDLP 173
                 S  + +  S++ S  + N    S++         DLP
Sbjct: 148 FTWHRSSEAEAETTSSSSSSSSHNHKQGSSLLKGEDEMFLDLP 190

[Close]
BLAST of Cla005623 vs. TrEMBL
Match: A5JNJ5_SOYBN (Dehydration-responsive element binding protein 6 OS=Glycine max GN=GLYMA_05G062100 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.5e-44
Identity = 103/167 (61.68%), Postives = 120/167 (71.86%), Query Frame = 1 

Query: 12  SQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWL 71
           S SSSSS  +  N  KEK  KK    N+GKHPTYRGVRMRQWGKWVSEIREP+KKSRIWL
Sbjct: 28  STSSSSSIEEATNTTKEK--KKKANSNEGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWL 87

Query: 72  GTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTN 131
           GTF TP+MAARAHDVAA TIKG SAYLNFPELA  LPRPAS+SPKDI+AAAAKAA+    
Sbjct: 88  GTFPTPDMAARAHDVAALTIKGSSAYLNFPELADELPRPASTSPKDIQAAAAKAAALDFG 147

Query: 132 NLLDSTHD--DDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDLPRSVP 177
           +    +HD   +L+ A  S +    S SS+ ++   G +DD    +P
Sbjct: 148 H---RSHDAESELSRAVSSSILTQASSSSSNSSSLKG-VDDTFLDLP 188

[Close]
BLAST of Cla005623 vs. TrEMBL
Match: U5GT39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s15550g PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.5e-44
Identity = 100/161 (62.11%), Postives = 113/161 (70.19%), Query Frame = 1 

Query: 7   RFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKK 66
           R Q  SQ SS  + D KN   E N K     N G+HP+YRGVRMRQWGKWVSEIR+PKKK
Sbjct: 36  RKQDQSQDSSKRNQDPKNN-NESNKKAKSGGNAGRHPSYRGVRMRQWGKWVSEIRQPKKK 95

Query: 67  SRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAA 126
           SRIWLGTF TPEMAARAHDVAA TIKGHSA+LNFPELAH  PRPASSSPKDI+AAAA AA
Sbjct: 96  SRIWLGTFPTPEMAARAHDVAALTIKGHSAHLNFPELAHEFPRPASSSPKDIQAAAALAA 155

Query: 127 SFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGE 168
           + S       T      + A+ +L L  SP S +A+  + E
Sbjct: 156 TLSC-----KTSPKGRETEAEDELMLPHSPDSTLASNETQE 190

[Close]
BLAST of Cla005623 vs. TrEMBL
Match: A9PL77_POPTR (TINY-like protein OS=Populus trichocarpa GN=TINYL8 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 99/161 (61.49%), Postives = 113/161 (70.19%), Query Frame = 1 

Query: 7   RFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKK 66
           R Q  SQ SS  + D KN   E N K     N G+HP+YRGVRMRQWGKWVSEIR+PKKK
Sbjct: 5   RKQDQSQDSSKRNQDPKNN-NESNKKAKSGGNAGRHPSYRGVRMRQWGKWVSEIRQPKKK 64

Query: 67  SRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAA 126
           SRIWLGTF TPEMAARAHDVAA TIKGHSA+LNFPE+AH  PRPASSSPKDI+AAAA AA
Sbjct: 65  SRIWLGTFPTPEMAARAHDVAALTIKGHSAHLNFPEIAHEFPRPASSSPKDIQAAAALAA 124

Query: 127 SFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGE 168
           + S       T      + A+ +L L  SP S +A+  + E
Sbjct: 125 TLSC-----KTSQKGRETEAEDELMLPHSPDSTLASNETQE 159

[Close]
BLAST of Cla005623 vs. NCBI nr
Match: gi|659095895|ref|XP_008448820.1| (PREDICTED: ethylene-responsive transcription factor ERF039 [Cucumis melo])

HSP 1 Score: 273.1 bits (697), Expect = 3.4e-70
Identity = 142/170 (83.53%), Postives = 147/170 (86.47%), Query Frame = 1 

Query: 1   MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEI 60
           MEDPL RFQFHSQS SSSSSDIKNCIKEK SKKVKL +DGKHPTYRGVRMRQWGKWVSEI
Sbjct: 1   MEDPLQRFQFHSQS-SSSSSDIKNCIKEKTSKKVKLGSDGKHPTYRGVRMRQWGKWVSEI 60

Query: 61  REPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRA 120
           REPKKKSRIWLGTFSTPEMAARAHDVAA+TIKGHSAYLNFPELAHRLPRPASSSPKDIRA
Sbjct: 61  REPKKKSRIWLGTFSTPEMAARAHDVAAKTIKGHSAYLNFPELAHRLPRPASSSPKDIRA 120

Query: 121 AAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDD 171
           AAAKAA F          +D+ N  AKS+LNLN   SSAVA KS GEIDD
Sbjct: 121 AAAKAALF----------NDEQNPGAKSELNLNCCGSSAVAVKSGGEIDD 159

[Close]
BLAST of Cla005623 vs. NCBI nr
Match: gi|449458972|ref|XP_004147220.1| (PREDICTED: ethylene-responsive transcription factor ERF039-like [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.7e-67
Identity = 137/170 (80.59%), Postives = 144/170 (84.71%), Query Frame = 1 

Query: 1   MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEI 60
           MEDPL RFQ HSQS SSSSSDIKNCIK+K SKKVK+ ND KHPTYRGVRMRQWGKWVSEI
Sbjct: 1   MEDPLQRFQLHSQS-SSSSSDIKNCIKQKASKKVKIGNDDKHPTYRGVRMRQWGKWVSEI 60

Query: 61  REPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRA 120
           REPKKKSRIWLGTFST EMAARAHDVAA+TIKGHSAYLNFPELAHRLPRPASSSPKDIRA
Sbjct: 61  REPKKKSRIWLGTFSTSEMAARAHDVAAKTIKGHSAYLNFPELAHRLPRPASSSPKDIRA 120

Query: 121 AAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDD 171
           AAAKAA F          +D+ N  AKS++NLN   SSAVA KS GEIDD
Sbjct: 121 AAAKAALF----------NDEQNPGAKSEMNLNCCGSSAVAVKSGGEIDD 159

[Close]
BLAST of Cla005623 vs. NCBI nr
Match: gi|549439198|gb|AGX25396.1| (AP2/ERF [Lotus corniculatus])

HSP 1 Score: 186.4 bits (472), Expect = 4.2e-44
Identity = 99/163 (60.74%), Postives = 117/163 (71.78%), Query Frame = 1 

Query: 12  SQSSSSSSSDIKNCIKE-KNSKK-VKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRI 71
           + SSSSS+ ++ N +K+ KN KK VK  NDGKHPTYRGVRMRQWGKWVSEIREP+KKSRI
Sbjct: 28  TSSSSSSAEEVTNMVKKNKNEKKGVKRSNDGKHPTYRGVRMRQWGKWVSEIREPRKKSRI 87

Query: 72  WLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFS 131
           WLGTF TP+MAARAHDVAA TIKG  AYLNFPELA  LPRPAS+SPKDI+ AAAKAA+  
Sbjct: 88  WLGTFPTPDMAARAHDVAALTIKGSGAYLNFPELAAELPRPASTSPKDIQVAAAKAAATD 147

Query: 132 TNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDLP 173
                 S  + +  S++ S  + N    S++         DLP
Sbjct: 148 FTWHRSSEAEAETTSSSSSSSSHNHKQGSSLLKGEDEMFLDLP 190

[Close]
BLAST of Cla005623 vs. NCBI nr
Match: gi|351726616|ref|NP_001235341.1| (dehydration-responsive element binding protein 6 [Glycine max])

HSP 1 Score: 185.3 bits (469), Expect = 9.4e-44
Identity = 103/167 (61.68%), Postives = 120/167 (71.86%), Query Frame = 1 

Query: 12  SQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWL 71
           S SSSSS  +  N  KEK  KK    N+GKHPTYRGVRMRQWGKWVSEIREP+KKSRIWL
Sbjct: 28  STSSSSSIEEATNTTKEK--KKKANSNEGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWL 87

Query: 72  GTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTN 131
           GTF TP+MAARAHDVAA TIKG SAYLNFPELA  LPRPAS+SPKDI+AAAAKAA+    
Sbjct: 88  GTFPTPDMAARAHDVAALTIKGSSAYLNFPELADELPRPASTSPKDIQAAAAKAAALDFG 147

Query: 132 NLLDSTHD--DDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDLPRSVP 177
           +    +HD   +L+ A  S +    S SS+ ++   G +DD    +P
Sbjct: 148 H---RSHDAESELSRAVSSSILTQASSSSSNSSSLKG-VDDTFLDLP 188

[Close]
BLAST of Cla005623 vs. NCBI nr
Match: gi|566149180|ref|XP_006368997.1| (hypothetical protein POPTR_0001s15550g [Populus trichocarpa])

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-43
Identity = 100/161 (62.11%), Postives = 113/161 (70.19%), Query Frame = 1 

Query: 7   RFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKK 66
           R Q  SQ SS  + D KN   E N K     N G+HP+YRGVRMRQWGKWVSEIR+PKKK
Sbjct: 36  RKQDQSQDSSKRNQDPKNN-NESNKKAKSGGNAGRHPSYRGVRMRQWGKWVSEIRQPKKK 95

Query: 67  SRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAA 126
           SRIWLGTF TPEMAARAHDVAA TIKGHSA+LNFPELAH  PRPASSSPKDI+AAAA AA
Sbjct: 96  SRIWLGTFPTPEMAARAHDVAALTIKGHSAHLNFPELAHEFPRPASSSPKDIQAAAALAA 155

Query: 127 SFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGE 168
           + S       T      + A+ +L L  SP S +A+  + E
Sbjct: 156 TLSC-----KTSPKGRETEAEDELMLPHSPDSTLASNETQE 190

The following BLAST results are available for this feature:
BLAST of Cla005623 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TINY_ARATH4.1e-3952.80Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE... [more]
ERF39_ARATH3.5e-3866.95Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF03... [more]
ERF38_ARATH4.5e-3852.57Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF03... [more]
ERF34_ARATH2.9e-3753.41Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF03... [more]
DREB3_ARATH3.8e-3753.89Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB... [more]
BLAST of Cla005623 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L472_CUCSA1.9e-6780.59Uncharacterized protein OS=Cucumis sativus GN=Csa_3G019400 PE=4 SV=1[more]
A0A140WWF4_LOTCO2.9e-4460.74AP2/ERF OS=Lotus corniculatus GN=ERF011 PE=2 SV=1[more]
A5JNJ5_SOYBN6.5e-4461.68Dehydration-responsive element binding protein 6 OS=Glycine max GN=GLYMA_05G0621... [more]
U5GT39_POPTR8.5e-4462.11Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s15550g PE=4 SV=1[more]
A9PL77_POPTR1.1e-4361.49TINY-like protein OS=Populus trichocarpa GN=TINYL8 PE=4 SV=1[more]
BLAST of Cla005623 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095895|ref|XP_008448820.1|3.4e-7083.53PREDICTED: ethylene-responsive transcription factor ERF039 [Cucumis melo][more]
gi|449458972|ref|XP_004147220.1|2.7e-6780.59PREDICTED: ethylene-responsive transcription factor ERF039-like [Cucumis sativus... [more]
gi|549439198|gb|AGX25396.1|4.2e-4460.74AP2/ERF [Lotus corniculatus][more]
gi|351726616|ref|NP_001235341.1|9.4e-4461.68dehydration-responsive element binding protein 6 [Glycine max][more]
gi|566149180|ref|XP_006368997.1|1.2e-4362.11hypothetical protein POPTR_0001s15550g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU65133watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005623Cla005623.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU65133WMU65133transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 45..56
score: 1.5E-10coord: 67..83
score: 1.5
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 44..102
score: 3.5
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 44..94
score: 6.8
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 44..107
score: 1.3
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 44..101
score: 22
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 44..102
score: 1.11
NoneNo IPR availablePANTHERPTHR31985FAMILY NOT NAMEDcoord: 12..165
score: 4.0
NoneNo IPR availablePANTHERPTHR31985:SF11ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF035coord: 12..165
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla005623Cla97C10G187120Watermelon (97103) v2wmwmbB053
Cla005623Csa3G019400Cucumber (Chinese Long) v2cuwmB195
Cla005623MELO3C013926Melon (DHL92) v3.5.1mewmB452
Cla005623ClCG10G002540Watermelon (Charleston Gray)wcgwmB053
Cla005623CSPI03G02540Wild cucumber (PI 183967)cpiwmB195
Cla005623Cucsa.321050Cucumber (Gy14) v1cgywmB585
Cla005623CmaCh16G011250Cucurbita maxima (Rimu)cmawmB295
Cla005623CmaCh06G007960Cucurbita maxima (Rimu)cmawmB790
Cla005623CmoCh16G011770Cucurbita moschata (Rifu)cmowmB288
Cla005623CmoCh06G008160Cucurbita moschata (Rifu)cmowmB784
Cla005623Lsi07G012820Bottle gourd (USVL1VR-Ls)lsiwmB428
Cla005623CsGy3G002470Cucumber (Gy14) v2cgybwmB184
Cla005623MELO3C013926.2Melon (DHL92) v3.6.1medwmB433
Cla005623Carg25184Silver-seed gourdcarwmB0526
Cla005623Carg24861Silver-seed gourdcarwmB0414
Cla005623CsaV3_3G002570Cucumber (Chinese Long) v3cucwmB205
Cla005623Bhi11G000029Wax gourdwgowmB027
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla005623Cucurbita maxima (Rimu)cmawmB254
Cla005623Cucurbita moschata (Rifu)cmowmB245
Cla005623Wild cucumber (PI 183967)cpiwmB381
Cla005623Watermelon (Charleston Gray)wcgwmB119
Cla005623Cucurbita pepo (Zucchini)cpewmB205
Cla005623Cucurbita pepo (Zucchini)cpewmB828
Cla005623Bottle gourd (USVL1VR-Ls)lsiwmB008
Cla005623Cucumber (Gy14) v2cgybwmB348
Cla005623Melon (DHL92) v3.6.1medwmB004
Cla005623Cucumber (Chinese Long) v3cucwmB398
Cla005623Watermelon (97103) v2wmwmbB050