Cla005604 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005604
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 2455576 .. 2455890 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGATCGTCTAGCGCCTCCATTGTCTCGGATAAGGGATTTGTAGGTCCATCGTTGTCGTCGTCGCAATCCGTAATCTTCAGATCTTCGAGTGTGAGTTGCGGCTTGGAATCAGAGCCTTACCTGCCGACTTTCAATCCGTCCTCTCACGCGGCCGAGAAAAAACGTCGCCATCTTAAGCTCGCTAAGATTTTCATCCACTCCATCCCTTTCATCGTCGTCTTTTGCGCCATCGTTCTGTGGTTATTCTCCGATCCAGGTACTGAAATTACTCAACTGCAAGATGCTCGTAGATCGAGATCGACTATTTGA

mRNA sequence

ATGAAGAGATCGTCTAGCGCCTCCATTGTCTCGGATAAGGGATTTGTAGGTCCATCGTTGTCGTCGTCGCAATCCGTAATCTTCAGATCTTCGAGTGTGAGTTGCGGCTTGGAATCAGAGCCTTACCTGCCGACTTTCAATCCGTCCTCTCACGCGGCCGAGAAAAAACGTCGCCATCTTAAGCTCGCTAAGATTTTCATCCACTCCATCCCTTTCATCGTCGTCTTTTGCGCCATCGTTCTGTGGTTATTCTCCGATCCAGGTACTGAAATTACTCAACTGCAAGATGCTCGTAGATCGAGATCGACTATTTGA

Coding sequence (CDS)

ATGAAGAGATCGTCTAGCGCCTCCATTGTCTCGGATAAGGGATTTGTAGGTCCATCGTTGTCGTCGTCGCAATCCGTAATCTTCAGATCTTCGAGTGTGAGTTGCGGCTTGGAATCAGAGCCTTACCTGCCGACTTTCAATCCGTCCTCTCACGCGGCCGAGAAAAAACGTCGCCATCTTAAGCTCGCTAAGATTTTCATCCACTCCATCCCTTTCATCGTCGTCTTTTGCGCCATCGTTCTGTGGTTATTCTCCGATCCAGGTACTGAAATTACTCAACTGCAAGATGCTCGTAGATCGAGATCGACTATTTGA

Protein sequence

MKRSSSASIVSDKGFVGPSLSSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRRHLKLAKIFIHSIPFIVVFCAIVLWLFSDPGTEITQLQDARRSRSTI

Homology

[Close]

BLAST of Cla005604 vs. TrEMBL
Match: A0A0A0L1G0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017240 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-39
Identity = 87/104 (83.65%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 1   MKRSSSASIVSDKGFVGPSLSSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRRHL 60
           MKRSSSASIVSD  FV  S S S S IFRSSSVS GLESEPYLPTF+P SHAAEKKRRHL
Sbjct: 1   MKRSSSASIVSDNRFVCSSSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKKRRHL 60

Query: 61  KLAKIFIHSIPFIVVFCAIVLWLFSDPGTEITQLQDARRSRSTI 105
           KLAKIFIHSIPF+++FCAIVLWLFSDPGTEIT+++DARRSRSTI
Sbjct: 61  KLAKIFIHSIPFVILFCAIVLWLFSDPGTEITRVKDARRSRSTI 104

[Close]

BLAST of Cla005604 vs. TrEMBL
Match: B3H642_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g35658 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1


Query: 1  MKRSSSASIVSDK-GFVGPSLSSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRRH 60
          M+RS+SASIVSD+     PS S S   I  S+      +S   LP ++P+SH  +K +  
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSD---DSHLLLPRYDPNSHPGKKNKSR 60

Query: 61 LKLAKIFIHSIPFIVVFCAIVLWLFSDPGTEITQLQD 97
           + A+  IH IP +++ CA++LW+FS+PG +I  L D
Sbjct: 61 FRSAENAIHFIPIVLILCAVILWMFSNPGNQIQFLGD 94

[Close]

BLAST of Cla005604 vs. TrEMBL
Match: A0A0B0PAT8_GOSAR (Gamma-glutamyl phosphate reductase OS=Gossypium arboreum GN=F383_24689 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-09
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1


Query: 1  MKRSSSASIVSDKGFVGPSLSSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRRHL 60
          M RSS ++ VS + F+      SQS+          L  +  LP +NP S AAEK+R HL
Sbjct: 1  MLRSSCSNRVSSEVFL--ESPDSQSLSSNQHGSETVLLDKQLLPKYNPLSRAAEKERSHL 60

Query: 61 KLAKIFIHSIPFIVVFCAIVLWLFSDPGTEITQ 94
          + A+  +H IPF++VFC  +LWLFS  GT +++
Sbjct: 61 RSAENAVHIIPFVLVFCGFILWLFSSIGTTMSR 91

[Close]

BLAST of Cla005604 vs. TrEMBL
Match: M5WB70_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013973mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-09
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 1  MKRSSSASIVSDKGFVGPSLSSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRRHL 60
          M RS+SAS VS+   V  S +S     F+ ++     +   +LPT++P SH A+++RR +
Sbjct: 1  MHRSASASRVSEDLVVTSSSTSPPPSTFKPTTDDSS-DQHLHLPTYDPLSHVAKRERRRI 60

Query: 61 KLAKIFIHSIPFIVVFCAIVLWLFSDP 88
          + A+  IH IP ++V CAI+LWLFS+P
Sbjct: 61 RSAENAIHIIPLLLVLCAIILWLFSNP 86

[Close]

BLAST of Cla005604 vs. TrEMBL
Match: A0A059C0D1_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E00369 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.0e-09
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1


Query: 1   MKRSSSASIVSDKGFVGPSL---SSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKR 60
           M+RSSSA  VSD+    P     ++SQS   R+         E  LPT +P SHAA K+R
Sbjct: 27  MRRSSSAPRVSDEAPSPPPTLPTTTSQSRCSRTGEPDDD-RREQQLPTCDPLSHAARKER 86

Query: 61  RHLKLAKIFIHSIPFIVVFCAIVLWLFSDPGTE 91
             L+ A+  +H IP ++V CA VLW FS PG+E
Sbjct: 87  SRLRSAENAVHGIPVLLVLCAFVLWFFSSPGSE 118

[Close]

BLAST of Cla005604 vs. NCBI nr
Match: gi|700200697|gb|KGN55830.1| (hypothetical protein Csa_3G017240 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-39
Identity = 87/104 (83.65%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 1   MKRSSSASIVSDKGFVGPSLSSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRRHL 60
           MKRSSSASIVSD  FV  S S S S IFRSSSVS GLESEPYLPTF+P SHAAEKKRRHL
Sbjct: 1   MKRSSSASIVSDNRFVCSSSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKKRRHL 60

Query: 61  KLAKIFIHSIPFIVVFCAIVLWLFSDPGTEITQLQDARRSRSTI 105
           KLAKIFIHSIPF+++FCAIVLWLFSDPGTEIT+++DARRSRSTI
Sbjct: 61  KLAKIFIHSIPFVILFCAIVLWLFSDPGTEITRVKDARRSRSTI 104

[Close]

BLAST of Cla005604 vs. NCBI nr
Match: gi|659095829|ref|XP_008448788.1| (PREDICTED: uncharacterized protein LOC103490852 isoform X2 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 9.8e-33
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 1


Query: 1  MKRSSSASIVSDKGFVGPSLSSS--QSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRR 60
          MKRSSSASIVSDK FV  S SSS  QS IFRSSSVS GLESEPYLPTF+P SHAAEKKRR
Sbjct: 1  MKRSSSASIVSDKRFVYSSSSSSLSQSAIFRSSSVSFGLESEPYLPTFSPFSHAAEKKRR 60

Query: 61 HLKLAKIFIHSIPFIVVFCAIVLWLFSDPG 89
          HLKLAKIFIHSIPFI++FCAIVLWLFSDPG
Sbjct: 61 HLKLAKIFIHSIPFIILFCAIVLWLFSDPG 90

[Close]

BLAST of Cla005604 vs. NCBI nr
Match: gi|659095827|ref|XP_008448787.1| (PREDICTED: uncharacterized protein LOC103490852 isoform X1 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 9.8e-33
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 1


Query: 1  MKRSSSASIVSDKGFVGPSLSSS--QSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRR 60
          MKRSSSASIVSDK FV  S SSS  QS IFRSSSVS GLESEPYLPTF+P SHAAEKKRR
Sbjct: 1  MKRSSSASIVSDKRFVYSSSSSSLSQSAIFRSSSVSFGLESEPYLPTFSPFSHAAEKKRR 60

Query: 61 HLKLAKIFIHSIPFIVVFCAIVLWLFSDPG 89
          HLKLAKIFIHSIPFI++FCAIVLWLFSDPG
Sbjct: 61 HLKLAKIFIHSIPFIILFCAIVLWLFSDPG 90

[Close]

BLAST of Cla005604 vs. NCBI nr
Match: gi|778675256|ref|XP_011650378.1| (PREDICTED: uncharacterized protein LOC101212731 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 6.4e-32
Identity = 74/88 (84.09%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 1  MKRSSSASIVSDKGFVGPSLSSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRRHL 60
          MKRSSSASIVSD  FV  S S S S IFRSSSVS GLESEPYLPTF+P SHAAEKKRRHL
Sbjct: 1  MKRSSSASIVSDNRFVCSSSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKKRRHL 60

Query: 61 KLAKIFIHSIPFIVVFCAIVLWLFSDPG 89
          KLAKIFIHSIPF+++FCAIVLWLFSDPG
Sbjct: 61 KLAKIFIHSIPFVILFCAIVLWLFSDPG 88

[Close]

BLAST of Cla005604 vs. NCBI nr
Match: gi|720010195|ref|XP_010259170.1| (PREDICTED: uncharacterized protein LOC104598687 [Nelumbo nucifera])

HSP 1 Score: 75.1 bits (183), Expect = 8.1e-11
Identity = 36/101 (35.64%), Postives = 63/101 (62.38%), Query Frame = 1


Query: 1   MKRSSSASIVSDKGFVGPSLSSSQSVIFRSSSVSCGLESEPYLPTFNPSSHAAEKKRRHL 60
           M RS+SA+ VSD+ F+  S   S S   ++ +V    +    +PT+NP S AA+K+++ +
Sbjct: 1   MHRSASATRVSDEFFIQHSSPPSSSKASQTHNVKTAFDDINEIPTYNPLSDAAKKEKQRI 60

Query: 61  KLAKIFIHSIPFIVVFCAIVLWLFSDPGTEITQLQDARRSR 102
           K A+  +H IPF+++ CA++LW FS+P  ++    ++  SR
Sbjct: 61  KFAENAVHVIPFVLLLCALILWFFSNPEVDMVHKDNSILSR 101

The following BLAST results are available for this feature:

BLAST of Cla005604 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1G0_CUCSA	1.7e-39	83.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017240 PE=4 SV=1	[more]
B3H642_ARATH	1.8e-09	40.21	Uncharacterized protein OS=Arabidopsis thaliana GN=At2g35658 PE=4 SV=1	[more]
A0A0B0PAT8_GOSAR	3.1e-09	40.86	Gamma-glutamyl phosphate reductase OS=Gossypium arboreum GN=F383_24689 PE=4 SV=1	[more]
M5WB70_PRUPE	6.9e-09	41.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013973mg PE=4 SV=1	[more]
A0A059C0D1_EUCGR	9.0e-09	44.09	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E00369 PE=4 ...	[more]

BLAST of Cla005604 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200697\|gb\|KGN55830.1\|	2.4e-39	83.65	hypothetical protein Csa_3G017240 [Cucumis sativus]	[more]
gi\|659095829\|ref\|XP_008448788.1\|	9.8e-33	86.67	PREDICTED: uncharacterized protein LOC103490852 isoform X2 [Cucumis melo]	[more]
gi\|659095827\|ref\|XP_008448787.1\|	9.8e-33	86.67	PREDICTED: uncharacterized protein LOC103490852 isoform X1 [Cucumis melo]	[more]
gi\|778675256\|ref\|XP_011650378.1\|	6.4e-32	84.09	PREDICTED: uncharacterized protein LOC101212731 [Cucumis sativus]	[more]
gi\|720010195\|ref\|XP_010259170.1\|	8.1e-11	35.64	PREDICTED: uncharacterized protein LOC104598687 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU32153	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU32651	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU59513	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005604	Cla005604.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU32153	WMU32153	transcribed_cluster
WMU32651	WMU32651	transcribed_cluster
WMU59513	WMU59513	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189	FAMILY NOT NAMED	coord: 2..97 score: 4.1
None	No IPR available	PANTHER	PTHR34189:SF1	SUBFAMILY NOT NAMED	coord: 2..97 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005604	Cla97C10G186930	Watermelon (97103) v2	wmwmbB053
Cla005604	Csa3G017240	Cucumber (Chinese Long) v2	cuwmB195
Cla005604	MELO3C013908	Melon (DHL92) v3.5.1	mewmB452
Cla005604	ClCG10G002350	Watermelon (Charleston Gray)	wcgwmB053
Cla005604	CSPI03G02350	Wild cucumber (PI 183967)	cpiwmB195
Cla005604	Cucsa.321240	Cucumber (Gy14) v1	cgywmB585
Cla005604	CmaCh06G008080	Cucurbita maxima (Rimu)	cmawmB790
Cla005604	CmaCh16G011110	Cucurbita maxima (Rimu)	cmawmB295
Cla005604	CmoCh16G011620	Cucurbita moschata (Rifu)	cmowmB288
Cla005604	CmoCh06G008310	Cucurbita moschata (Rifu)	cmowmB784
Cla005604	Lsi07G012630	Bottle gourd (USVL1VR-Ls)	lsiwmB428
Cla005604	Cp4.1LG14g09310	Cucurbita pepo (Zucchini)	cpewmB205
Cla005604	Cp4.1LG08g07230	Cucurbita pepo (Zucchini)	cpewmB828
Cla005604	CsGy3G002250	Cucumber (Gy14) v2	cgybwmB184
Cla005604	MELO3C013908.2	Melon (DHL92) v3.6.1	medwmB433
Cla005604	CsaV3_3G002380	Cucumber (Chinese Long) v3	cucwmB205

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005604	Wax gourd	wgowmB027
Cla005604	Silver-seed gourd	carwmB0562