Cla005474 (gene) Watermelon (97103) v1

Overview
NameCla005474
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionZinc finger CCCH domain-containing protein 44 (AHRD V1 **-- C3H44_ARATH); contains Interpro domain(s) IPR019835 SWIB domain
LocationChr9 : 34882689 .. 34883351 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCGCTTGAGTGGATCGAAAGTAGTAGACAGCAGGTATGTACTCCTGTAAGAATGAAAAGGAAAATTAGATCCAAGAGATATGAATTCGTTGGTTGGGGATCAAGACCACTTATTGAATTTCTTGAATCAATTGGTAAGGATATCAAAGAGAAGATTTCTCGACACGACGTAACCTCCATTATAAATGAATATGTCAATATTAACAATCTTCTTCATCCCTCTAGAAAGAAACGAATCCTTTGCGATGATAGGCTCCATTCCATTTTCGGAAGGAAAACAATTGGCCGTATTAAAATCCATGACATGCTAGAACCACACTTTGCTGAGAATCAAGATGAATCAGATGATGACTTTTCTTACAGCTCTGACGAGACGGAAAATCTTTTAAATACCCTCAAACGGGAGAATGGTATAATCCCAGGAAGAAAGCTAAGTCAGAAGACGAGAGTGGTTGTGAACCCAAACAGCTCTTTTGCTGCCGTGGTTCCTGGAAATATTAATCTTGTCTACTTGAGAAAGAGTTTAGTAGAGGATCTGCTTAAAGATCATGAAACCTTTGAGAGCAAGTTGATTGGTAGCTTTGTCAGGATTAAATCTGATCCCCATGACTATCTTCAGAAAAATACTCATCAGCTCGTGCAAGTTATAGGTAACTAA

mRNA sequence

ATGGATTCGCTTGAGTGGATCGAAAGTAGTAGACAGCAGGTATGTACTCCTGTAAGAATGAAAAGGAAAATTAGATCCAAGAGATATGAATTCGTTGGTTGGGGATCAAGACCACTTATTGAATTTCTTGAATCAATTGGTAAGGATATCAAAGAGAAGATTTCTCGACACGACGTAACCTCCATTATAAATGAATATGTCAATATTAACAATCTTCTTCATCCCTCTAGAAAGAAACGAATCCTTTGCGATGATAGGCTCCATTCCATTTTCGGAAGGAAAACAATTGGCCGTATTAAAATCCATGACATGCTAGAACCACACTTTGCTGAGAATCAAGATGAATCAGATGATGACTTTTCTTACAGCTCTGACGAGACGGAAAATCTTTTAAATACCCTCAAACGGGAGAATGGTATAATCCCAGGAAGAAAGCTAAGTCAGAAGACGAGAGTGGTTGTGAACCCAAACAGCTCTTTTGCTGCCGTGGTTCCTGGAAATATTAATCTTGTCTACTTGAGAAAGAGTTTAGTAGAGGATCTGCTTAAAGATCATGAAACCTTTGAGAGCAAGTTGATTGGTAGCTTTGTCAGGATTAAATCTGATCCCCATGACTATCTTCAGAAAAATACTCATCAGCTCGTGCAAGTTATAGGTAACTAA

Coding sequence (CDS)

ATGGATTCGCTTGAGTGGATCGAAAGTAGTAGACAGCAGGTATGTACTCCTGTAAGAATGAAAAGGAAAATTAGATCCAAGAGATATGAATTCGTTGGTTGGGGATCAAGACCACTTATTGAATTTCTTGAATCAATTGGTAAGGATATCAAAGAGAAGATTTCTCGACACGACGTAACCTCCATTATAAATGAATATGTCAATATTAACAATCTTCTTCATCCCTCTAGAAAGAAACGAATCCTTTGCGATGATAGGCTCCATTCCATTTTCGGAAGGAAAACAATTGGCCGTATTAAAATCCATGACATGCTAGAACCACACTTTGCTGAGAATCAAGATGAATCAGATGATGACTTTTCTTACAGCTCTGACGAGACGGAAAATCTTTTAAATACCCTCAAACGGGAGAATGGTATAATCCCAGGAAGAAAGCTAAGTCAGAAGACGAGAGTGGTTGTGAACCCAAACAGCTCTTTTGCTGCCGTGGTTCCTGGAAATATTAATCTTGTCTACTTGAGAAAGAGTTTAGTAGAGGATCTGCTTAAAGATCATGAAACCTTTGAGAGCAAGTTGATTGGTAGCTTTGTCAGGATTAAATCTGATCCCCATGACTATCTTCAGAAAAATACTCATCAGCTCGTGCAAGTTATAGGTAACTAA

Protein sequence

MDSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVTSIINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDFSYSSDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVEDLLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIGN
Homology
[Close]
BLAST of Cla005474 vs. Swiss-Prot
Match: Y5843_ARATH (Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-54
Identity = 112/220 (50.91%), Postives = 150/220 (68.18%), Query Frame = 1 

Query: 1   MDSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVT 60
           M  + W+E       +    KRK R KR+EFVGWGSR LIEFL S+GKD  E ISR+DV+
Sbjct: 1   MGDITWVEEGNGSATSS--RKRKARPKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVS 60

Query: 61  SIINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF 120
             I +Y++   LL PS KK+++CD RL  +FG +TI R+K++D+LE H+ ENQD+SD DF
Sbjct: 61  DTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQDDSDFDF 120

Query: 121 SYSSDETENLLNTLKRENGIIPGRKLSQKT-RVVVNPNSSFAAVVPGNINLVYLRKSLVE 180
            Y  DE + + ++           K++++T +VV  P  +FAA+V  NI L+YLRKSLV+
Sbjct: 121 LY-EDEPQIICHS----------EKIAKRTSKVVKKPRGTFAAIVSDNIKLLYLRKSLVQ 180

Query: 181 DLLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           +LLK  +TFE K++GSFVRIKSDP+DYLQK  +QLVQV G
Sbjct: 181 ELLKSPDTFEGKMLGSFVRIKSDPNDYLQKYPYQLVQVTG 207

[Close]
BLAST of Cla005474 vs. Swiss-Prot
Match: C3H19_ARATH (Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 61/199 (30.65%), Postives = 104/199 (52.26%), Query Frame = 1 

Query: 30  EFVGWGSRPLIEFLESIGKDIKEKISRHDVTSIINEYVNINNLLHPSRKKRILCDDRLHS 89
           E + W S+ L++ +  + +  +  +   +V +++  Y+   NL  P RK +++CD RL +
Sbjct: 803 ETMEWASKELLDLVVHMRRGDRSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQN 862

Query: 90  IFGRKTIGRIKIHDMLEPHFAENQDESDDDFSYSSDETENLLNTLKRENGIIPGRKLSQK 149
           +FG+  +G  ++ ++L+ HF + +    DD      +TE   +    EN   P +    K
Sbjct: 863 LFGKSHVGHFEMLNLLDSHFLKKEQNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDK 922

Query: 150 TRVVVNPN---------SSFAAVVPGNINLVYLRKSLVEDLLKDHETFESKLIGSFVRIK 209
            R     N           FAAV   NINL+YLR+SLVEDLL+D   FE K+  +FVR++
Sbjct: 923 KRKTRKKNVRKGRQSNLDDFAAVDMHNINLIYLRRSLVEDLLEDSTAFEEKVASAFVRLR 982

Query: 210 SDPHDYLQKNTHQLVQVIG 220
              +   +++ ++LVQV+G
Sbjct: 983 ISGNQ--KQDLYRLVQVVG 999

[Close]
BLAST of Cla005474 vs. Swiss-Prot
Match: C3H44_ARATH (Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 56/193 (29.02%), Postives = 104/193 (53.89%), Query Frame = 1 

Query: 34  WGSRPLIEFLESIGKDIKEKISRHDVTSIINEYVNINNLLHPSRKKRILCDDRLHSIFGR 93
           W ++ L+EF+  +       +S+ DV  ++ +Y+   NL  P +K ++LCD  L  +FG+
Sbjct: 319 WATKELLEFVSFMKNGDTSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGK 378

Query: 94  KTIGRIKIHDMLEPHFAENQDESDDDFSYSSDETENLLNTLKRENGIIP-----GRKLSQ 153
           + +G  ++  +LE H    Q++     + + + T  + + ++ ++   P      RK+ +
Sbjct: 379 QRVGHFEMLKLLESHVL-IQEKPKGAKTTNGETTHAVPSQIEEDSVHDPMVRDRRRKMRR 438

Query: 154 KT--RVVVNPNSSFAAVVPGNINLVYLRKSLVEDLLKDHETFESKLIGSFVRIKSDPHDY 213
           KT  RV      ++AA+   NINL+YLR+  +E LL D    + K++G+ +RIK    D 
Sbjct: 439 KTDGRVQNENLDAYAAIDVHNINLIYLRRKFLESLLDDINKVDEKVVGTILRIKVSGSDQ 498

Query: 214 LQKNTHQLVQVIG 220
            + + H+LVQV+G
Sbjct: 499 -KLDIHRLVQVVG 509

[Close]
BLAST of Cla005474 vs. TrEMBL
Match: A0A0A0K3N2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252670 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 8.9e-115
Identity = 208/219 (94.98%), Postives = 212/219 (96.80%), Query Frame = 1 

Query: 1   MDSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVT 60
           MDS EWIESS QQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLES+GKDIKEKISRHDVT
Sbjct: 1   MDSFEWIESSGQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESVGKDIKEKISRHDVT 60

Query: 61  SIINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF 120
           SIINEYVNINNLLHPS+KKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQ ESDDDF
Sbjct: 61  SIINEYVNINNLLHPSKKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQHESDDDF 120

Query: 121 SYSSDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVED 180
           SYSSDETENL + LKR+NGI PGRKLSQKTRV VNPNSSFAAVVPGNINLVYLRKSLVED
Sbjct: 121 SYSSDETENLFSVLKRDNGITPGRKLSQKTRVHVNPNSSFAAVVPGNINLVYLRKSLVED 180

Query: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG
Sbjct: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 219

[Close]
BLAST of Cla005474 vs. TrEMBL
Match: A0A061DJC6_THECC (Binding protein, putative isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_001638 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.1e-67
Identity = 129/214 (60.28%), Postives = 165/214 (77.10%), Query Frame = 1 

Query: 6   WIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVTSIINE 65
           W+E    +  TP  +KRK+RS++ EFVGWGS+PLIEFLESIGKD  ++IS+HDVT II +
Sbjct: 10  WLEEHSGKPATPASLKRKVRSRKLEFVGWGSKPLIEFLESIGKDTTKQISQHDVTDIIRK 69

Query: 66  YVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDFSYSSD 125
           YVN NNL+HP++KKRILCD+RL+SIFGRK IGR+K++D+LE H+AENQD   D FS  SD
Sbjct: 70  YVNDNNLVHPAKKKRILCDERLYSIFGRKAIGRMKVYDLLETHYAENQDAWSDGFSSMSD 129

Query: 126 ETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVEDLLKDH 185
           E +      + +  +I  RK  QK +V+  P S FAA+V  NI LVYL+KSLV+DLLKD 
Sbjct: 130 EDD----VGEEQKSVISERKAYQKKKVIETPKSCFAAIVQDNIKLVYLKKSLVQDLLKDP 189

Query: 186 ETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           E FE+K++GSFVRIKSDP+ YLQ+N+HQLV V G
Sbjct: 190 ERFEAKVVGSFVRIKSDPNYYLQQNSHQLVLVKG 219

[Close]
BLAST of Cla005474 vs. TrEMBL
Match: A0A061DK51_THECC (Binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_001638 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.1e-67
Identity = 129/214 (60.28%), Postives = 165/214 (77.10%), Query Frame = 1 

Query: 6   WIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVTSIINE 65
           W+E    +  TP  +KRK+RS++ EFVGWGS+PLIEFLESIGKD  ++IS+HDVT II +
Sbjct: 10  WLEEHSGKPATPASLKRKVRSRKLEFVGWGSKPLIEFLESIGKDTTKQISQHDVTDIIRK 69

Query: 66  YVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDFSYSSD 125
           YVN NNL+HP++KKRILCD+RL+SIFGRK IGR+K++D+LE H+AENQD   D FS  SD
Sbjct: 70  YVNDNNLVHPAKKKRILCDERLYSIFGRKAIGRMKVYDLLETHYAENQDAWSDGFSSMSD 129

Query: 126 ETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVEDLLKDH 185
           E +      + +  +I  RK  QK +V+  P S FAA+V  NI LVYL+KSLV+DLLKD 
Sbjct: 130 EDD----VGEEQKSVISERKAYQKKKVIETPKSCFAAIVQDNIKLVYLKKSLVQDLLKDP 189

Query: 186 ETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           E FE+K++GSFVRIKSDP+ YLQ+N+HQLV V G
Sbjct: 190 ERFEAKVVGSFVRIKSDPNYYLQQNSHQLVLVKG 219

[Close]
BLAST of Cla005474 vs. TrEMBL
Match: D7TB52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0130g00460 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.4e-66
Identity = 124/217 (57.14%), Postives = 165/217 (76.04%), Query Frame = 1 

Query: 6   WIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVTSIINE 65
           W+E S++Q  TP++ KRK +SK+ EFVGWGS+PLIEFL+SIGKD  + +S +DVT+IIN 
Sbjct: 12  WMEESKEQFYTPMKSKRKFKSKKKEFVGWGSKPLIEFLQSIGKDTSQNLSHYDVTAIINT 71

Query: 66  YVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQD--ESDDDFSYS 125
           YVN N+L HP RKK ++CD++LHS+ GRK++ R KIHDMLEPHF  NQ+  ES D+  YS
Sbjct: 72  YVNENSLFHPKRKKTVVCDEKLHSLLGRKSVSRFKIHDMLEPHFVGNQEEAESGDELFYS 131

Query: 126 SDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVEDLLK 185
           SDE E+ +   ++++ +       QK +VV  P S FAA+VP NI LVYLR+SLVE+L+K
Sbjct: 132 SDEEEDNVCATRKQHSL-------QKKKVVETPKSCFAAIVPENIKLVYLRRSLVENLIK 191

Query: 186 DHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIGN 221
             E FE K++GS VR+K DP+DYLQKN+HQLV+V GN
Sbjct: 192 KPEEFEDKVVGSIVRVKCDPNDYLQKNSHQLVRVAGN 221

[Close]
BLAST of Cla005474 vs. TrEMBL
Match: B9SS21_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0519950 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.6e-66
Identity = 126/218 (57.80%), Postives = 164/218 (75.23%), Query Frame = 1 

Query: 2   DSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVTS 61
           DS  W+E    +   PV MKRK R+++ EFVGWGSRPLIEFLESIG D  +KIS++DVT 
Sbjct: 5   DSFFWVEEITGEAYVPVGMKRKARTRKMEFVGWGSRPLIEFLESIGVDTSKKISQYDVTD 64

Query: 62  IINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDFS 121
           I+N+Y+  +NL HP +KKRIL D+RL S+FGRKTI + K++++L  HFAENQ+ESDDD  
Sbjct: 65  IVNKYIKEHNLHHPQKKKRILSDERLLSLFGRKTIAKNKVYELLGTHFAENQEESDDDLL 124

Query: 122 YSSDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVEDL 181
           +SS+E     NT +R+  +   RK   K +VV  P S FAA++P NI  +YLR++LV++L
Sbjct: 125 FSSEEDG---NTSERQKNMTSERKTQIKKKVVETPKSCFAAIIPDNIKRIYLRRTLVQNL 184

Query: 182 LKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           LK+ E FE K+IGSFVR+KSDPHDYLQKN+H LVQVIG
Sbjct: 185 LKEPEAFERKIIGSFVRVKSDPHDYLQKNSHMLVQVIG 219

[Close]
BLAST of Cla005474 vs. NCBI nr
Match: gi|449461126|ref|XP_004148294.1| (PREDICTED: uncharacterized protein At5g08430 isoform X1 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 1.3e-114
Identity = 208/219 (94.98%), Postives = 212/219 (96.80%), Query Frame = 1 

Query: 1   MDSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVT 60
           MDS EWIESS QQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLES+GKDIKEKISRHDVT
Sbjct: 1   MDSFEWIESSGQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESVGKDIKEKISRHDVT 60

Query: 61  SIINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF 120
           SIINEYVNINNLLHPS+KKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQ ESDDDF
Sbjct: 61  SIINEYVNINNLLHPSKKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQHESDDDF 120

Query: 121 SYSSDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVED 180
           SYSSDETENL + LKR+NGI PGRKLSQKTRV VNPNSSFAAVVPGNINLVYLRKSLVED
Sbjct: 121 SYSSDETENLFSVLKRDNGITPGRKLSQKTRVHVNPNSSFAAVVPGNINLVYLRKSLVED 180

Query: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG
Sbjct: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 219

[Close]
BLAST of Cla005474 vs. NCBI nr
Match: gi|778726126|ref|XP_011659061.1| (PREDICTED: uncharacterized protein At5g08430 isoform X3 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 1.3e-114
Identity = 208/219 (94.98%), Postives = 212/219 (96.80%), Query Frame = 1 

Query: 1   MDSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVT 60
           MDS EWIESS QQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLES+GKDIKEKISRHDVT
Sbjct: 1   MDSFEWIESSGQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESVGKDIKEKISRHDVT 60

Query: 61  SIINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF 120
           SIINEYVNINNLLHPS+KKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQ ESDDDF
Sbjct: 61  SIINEYVNINNLLHPSKKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQHESDDDF 120

Query: 121 SYSSDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVED 180
           SYSSDETENL + LKR+NGI PGRKLSQKTRV VNPNSSFAAVVPGNINLVYLRKSLVED
Sbjct: 121 SYSSDETENLFSVLKRDNGITPGRKLSQKTRVHVNPNSSFAAVVPGNINLVYLRKSLVED 180

Query: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG
Sbjct: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 219

[Close]
BLAST of Cla005474 vs. NCBI nr
Match: gi|700189077|gb|KGN44310.1| (hypothetical protein Csa_7G252670 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 1.3e-114
Identity = 208/219 (94.98%), Postives = 212/219 (96.80%), Query Frame = 1 

Query: 1   MDSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVT 60
           MDS EWIESS QQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLES+GKDIKEKISRHDVT
Sbjct: 1   MDSFEWIESSGQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESVGKDIKEKISRHDVT 60

Query: 61  SIINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF 120
           SIINEYVNINNLLHPS+KKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQ ESDDDF
Sbjct: 61  SIINEYVNINNLLHPSKKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQHESDDDF 120

Query: 121 SYSSDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVED 180
           SYSSDETENL + LKR+NGI PGRKLSQKTRV VNPNSSFAAVVPGNINLVYLRKSLVED
Sbjct: 121 SYSSDETENLFSVLKRDNGITPGRKLSQKTRVHVNPNSSFAAVVPGNINLVYLRKSLVED 180

Query: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG
Sbjct: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 219

[Close]
BLAST of Cla005474 vs. NCBI nr
Match: gi|778726122|ref|XP_011659060.1| (PREDICTED: uncharacterized protein At5g08430 isoform X2 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 1.3e-114
Identity = 208/219 (94.98%), Postives = 212/219 (96.80%), Query Frame = 1 

Query: 1   MDSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVT 60
           MDS EWIESS QQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLES+GKDIKEKISRHDVT
Sbjct: 1   MDSFEWIESSGQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESVGKDIKEKISRHDVT 60

Query: 61  SIINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF 120
           SIINEYVNINNLLHPS+KKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQ ESDDDF
Sbjct: 61  SIINEYVNINNLLHPSKKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQHESDDDF 120

Query: 121 SYSSDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVED 180
           SYSSDETENL + LKR+NGI PGRKLSQKTRV VNPNSSFAAVVPGNINLVYLRKSLVED
Sbjct: 121 SYSSDETENLFSVLKRDNGITPGRKLSQKTRVHVNPNSSFAAVVPGNINLVYLRKSLVED 180

Query: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG
Sbjct: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 219

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BLAST of Cla005474 vs. NCBI nr
Match: gi|659092443|ref|XP_008447064.1| (PREDICTED: uncharacterized protein At5g08430 isoform X2 [Cucumis melo])

HSP 1 Score: 420.6 bits (1080), Expect = 1.7e-114
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 1 

Query: 1   MDSLEWIESSRQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESIGKDIKEKISRHDVT 60
           MDS EWIESS QQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLES+GKDIKEKISRHDVT
Sbjct: 1   MDSFEWIESSGQQVCTPVRMKRKIRSKRYEFVGWGSRPLIEFLESVGKDIKEKISRHDVT 60

Query: 61  SIINEYVNINNLLHPSRKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF 120
           SIINEYVNINNLLHPS+KKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF
Sbjct: 61  SIINEYVNINNLLHPSKKKRILCDDRLHSIFGRKTIGRIKIHDMLEPHFAENQDESDDDF 120

Query: 121 SYSSDETENLLNTLKRENGIIPGRKLSQKTRVVVNPNSSFAAVVPGNINLVYLRKSLVED 180
           SYSSDETENL + LKR+NGI PGRKLS KTRV VNPNSSFAAVVPGNINL+YLRKSLVED
Sbjct: 121 SYSSDETENLFSVLKRDNGITPGRKLSLKTRVFVNPNSSFAAVVPGNINLLYLRKSLVED 180

Query: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 220
           LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG
Sbjct: 181 LLKDHETFESKLIGSFVRIKSDPHDYLQKNTHQLVQVIG 219

The following BLAST results are available for this feature:
BLAST of Cla005474 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y5843_ARATH1.1e-5450.91Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2[more]
C3H19_ARATH1.3e-2130.65Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE... [more]
C3H44_ARATH1.4e-1729.02Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g511... [more]
BLAST of Cla005474 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3N2_CUCSA8.9e-11594.98Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252670 PE=4 SV=1[more]
A0A061DJC6_THECC3.1e-6760.28Binding protein, putative isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_001638 ... [more]
A0A061DK51_THECC3.1e-6760.28Binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_001638 PE=4 SV=1[more]
D7TB52_VITVI3.4e-6657.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0130g00460 PE=4 SV=... [more]
B9SS21_RICCO7.6e-6657.80Protein binding protein, putative OS=Ricinus communis GN=RCOM_0519950 PE=4 SV=1[more]
BLAST of Cla005474 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461126|ref|XP_004148294.1|1.3e-11494.98PREDICTED: uncharacterized protein At5g08430 isoform X1 [Cucumis sativus][more]
gi|778726126|ref|XP_011659061.1|1.3e-11494.98PREDICTED: uncharacterized protein At5g08430 isoform X3 [Cucumis sativus][more]
gi|700189077|gb|KGN44310.1|1.3e-11494.98hypothetical protein Csa_7G252670 [Cucumis sativus][more]
gi|778726122|ref|XP_011659060.1|1.3e-11494.98PREDICTED: uncharacterized protein At5g08430 isoform X2 [Cucumis sativus][more]
gi|659092443|ref|XP_008447064.1|1.7e-11494.52PREDICTED: uncharacterized protein At5g08430 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003121SWIB_MDM2_domain
IPR004343Plus-3_dom
IPR019835SWIB_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0016570 histone modification
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005474Cla005474.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3DG3DSA:1.10.245.10coord: 22..118
score: 5.1
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 37..109
score: 6.7
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 24..115
score: 4.58
IPR004343Plus-3 domainPFAMPF03126Plus-3coord: 167..219
score: 1.
IPR004343Plus-3 domainSMARTSM00719rtf1coord: 162..220
score: 6.
IPR004343Plus-3 domainPROFILEPS51360PLUS3coord: 162..220
score: 19
IPR004343Plus-3 domainunknownSSF159042Plus3-likecoord: 164..219
score: 3.
IPR019835SWIB domainSMARTSM00151swib_2coord: 36..114
score: 0.
NoneNo IPR availablePANTHERPTHR14445GRB10 INTERACTING GYF PROTEINcoord: 3..125
score: 2.2E-51coord: 168..209
score: 2.2
NoneNo IPR availablePANTHERPTHR14445:SF39SWIB/MDM2, PLUS-3 AND GYF DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 3..125
score: 2.2E-51coord: 168..209
score: 2.2