Cla003724 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003724
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 13307359 .. 13307896 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCGGTGCCAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTTCTTAATGCTTTTGCATCCATATTAAGTGCGAAAAGTTTCTGAATCTAGAGCTCTTTGAGTTTTTTCCCCTCCCCAAAAGGAAATCAACGGTGTTCAATTTTAAACTTTATTTCTCTCCCCAGTGTTTTAGTTGCGAAAGTGCGCTCTAGAATTTTGAAATGACAACAAGATAGCCTTTCCCTTTCCTCTGCTTTAAAATAAAAAGTTTGGCGAAACGTTTCAGCAAATAAGGTAATGTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA

mRNA sequence

ATGGCTTCCATCGGTGCCAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA

Coding sequence (CDS)

ATGGCTTCCATCGGTGCCAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA

Protein sequence

MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHSASSSALMTSMLSITRHSCGWLPEGA

Homology

[Close]

BLAST of Cla003724 vs. Swiss-Prot
Match: NFD6_ARATH (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NFD6 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-10
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 5  GARSVFRSFSGSARRAAAHIGSQAKPSSSSP--FRMATSKPLSHRTFRCAPEMSFCLESM 64
          GARS+ R+   S+R AAA  G  A  + S+P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLRA--ASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSSALMTSMLSITRHSCGWLPE 91
          +P+HSA++SALMTS LSI+  + GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: A0A0A0LT36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408420 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-41
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: A0A0A0LN06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408390 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-41
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: A0A0A0LMP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408410 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.1e-40
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPE 91
          SMMPFHS SSSALMTSMLSI+RHSCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: K7LW44_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G206300 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-23
Identity = 58/91 (63.74%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 2  ASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLES 61
          A   ARS+FRS S  ARRAA  +GS AK ++ SPFR+A++KPLS  T RC  E+SFC+ES
Sbjct: 5  AGAAARSIFRSCS--ARRAAFRLGSDAK-AARSPFRVASNKPLSQSTLRCPVELSFCVES 64

Query: 62 MMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          M+P+HSA++SALMTSMLS++RHS GWLPEG+
Sbjct: 65 MLPYHSATASALMTSMLSVSRHSYGWLPEGS 92

[Close]

BLAST of Cla003724 vs. TrEMBL
Match: A0A0B2R7Z5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007639 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.4e-23
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1


Query: 2  ASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLES 61
          A   ARS+FRS S  ARRAA  +GS AK ++ SPFR+A++KPLS  T RC  E+SFC+ES
Sbjct: 5  AGAAARSIFRSCS--ARRAAFRLGSDAK-AARSPFRVASNKPLSQSTLRCPVELSFCVES 64

Query: 62 MMPFHSASSSALMTSMLSITRHSCGWLPEG 92
          M+P+HSA++SALMTSMLS++RHS GWLPEG
Sbjct: 65 MLPYHSATASALMTSMLSVSRHSYGWLPEG 91

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|700208077|gb|KGN63196.1| (hypothetical protein Csa_2G408420 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-41
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|700208074|gb|KGN63193.1| (hypothetical protein Csa_2G408390 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 5.1e-41
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEGA 93
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|778673327|ref|XP_011649972.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-41
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|778673345|ref|XP_011649976.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

[Close]

BLAST of Cla003724 vs. NCBI nr
Match: gi|778673340|ref|XP_011649974.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MASIGARSVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLE 60
          MASIGARS FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSITRHSCGWLPEG 92
          SMMPFHS SSSALMTSMLSI+RHSCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

The following BLAST results are available for this feature:

BLAST of Cla003724 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFD6_ARATH	1.6e-10	44.32	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]

BLAST of Cla003724 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT36_CUCSA	1.6e-41	93.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408420 PE=4 SV=1	[more]
A0A0A0LN06_CUCSA	3.5e-41	93.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408390 PE=4 SV=1	[more]
A0A0A0LMP1_CUCSA	5.1e-40	93.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408410 PE=4 SV=1	[more]
K7LW44_SOYBN	5.7e-23	63.74	Uncharacterized protein OS=Glycine max GN=GLYMA_12G206300 PE=4 SV=1	[more]
A0A0B2R7Z5_GLYSO	7.4e-23	64.44	Uncharacterized protein OS=Glycine soja GN=glysoja_007639 PE=4 SV=1	[more]

BLAST of Cla003724 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208077\|gb\|KGN63196.1\|	2.3e-41	93.48	hypothetical protein Csa_2G408420 [Cucumis sativus]	[more]
gi\|700208074\|gb\|KGN63193.1\|	5.1e-41	93.48	hypothetical protein Csa_2G408390 [Cucumis sativus]	[more]
gi\|778673327\|ref\|XP_011649972.1\|	6.6e-41	93.41	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|778673345\|ref\|XP_011649976.1\|	1.5e-40	93.41	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
gi\|778673340\|ref\|XP_011649974.1\|	1.5e-40	93.41	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0000741	karyogamy

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000741	karyogamy
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU10230	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU13029	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU41071	watermelon EST collection version 2.0	transcribed_cluster
WMU61072	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003724	Cla003724.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU10230	WMU10230	transcribed_cluster
WMU61072	WMU61072	transcribed_cluster
WMU41071	WMU41071	transcribed_cluster
WMU13029	WMU13029	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..91 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003724	Cla97C02G035980	Watermelon (97103) v2	wmwmbB318
Cla003724	Csa2G408390	Cucumber (Chinese Long) v2	cuwmB146
Cla003724	MELO3C019342	Melon (DHL92) v3.5.1	mewmB131
Cla003724	ClCG02G009690	Watermelon (Charleston Gray)	wcgwmB202
Cla003724	CSPI02G25850	Wild cucumber (PI 183967)	cpiwmB148
Cla003724	Cucsa.087560	Cucumber (Gy14) v1	cgywmB100
Cla003724	CmaCh02G002050	Cucurbita maxima (Rimu)	cmawmB608
Cla003724	CmoCh02G002090	Cucurbita moschata (Rifu)	cmowmB599
Cla003724	CmoCh20G006610	Cucurbita moschata (Rifu)	cmowmB533
Cla003724	Cp4.1LG16g04190	Cucurbita pepo (Zucchini)	cpewmB300
Cla003724	Cp4.1LG05g14210	Cucurbita pepo (Zucchini)	cpewmB740
Cla003724	CsGy2G025470	Cucumber (Gy14) v2	cgybwmB138
Cla003724	MELO3C034712.2	Melon (DHL92) v3.6.1	medwmB125
Cla003724	Carg05133	Silver-seed gourd	carwmB0811
Cla003724	CsaV3_2G034370	Cucumber (Chinese Long) v3	cucwmB158
Cla003724	Bhi10G001051	Wax gourd	wgowmB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003724	Bottle gourd (USVL1VR-Ls)	lsiwmB077